The Magnetic Environment of a Stealth Coronal Mass Ejection

Interest in stealth coronal mass ejections (CMEs) is increasing due to their relatively high occurrence rate and space weather impact. However, typical CME signatures such as extreme-ultraviolet dimmings and post-eruptive arcades are hard to identify and require extensive image processing techniques. These weak observational signatures mean that little is currently understood about the physics of these events. We present an extensive study of the magnetic field configuration in which the stealth CME of 2011 March 3 occurred. Three distinct episodes of flare ribbon formation are observed in the stealth CME source active region (AR). Two occurred prior to the eruption and suggest the occurrence of magnetic reconnection that builds the structure that will become eruptive. The third occurs in a time close to the eruption of a cavity that is observed in STEREO-B 171 Å data; this subsequently becomes part of the propagating CME observed in coronagraph data. We use both local (Cartesian) and global (spherical) models of the coronal magnetic field, which are complemented and verified by the observational analysis. We find evidence of a coronal null point, with field lines computed from its neighborhood connecting the stealth CME source region to two ARs in the northern hemisphere. We conclude that reconnection at the null point aids the eruption of the stealth CME by removing the field that acted to stabilize the preeruptive structure. This stealth CME, despite its weak signatures, has the main characteristics of other CMEs, and its eruption is driven by similar mechanisms

Thermodynamic Structure of the Solar Corona: Tomographic Reconstructions and MHD Modeling

We carry out a study of the global three-dimensional (3D) structure of the electron density and temperature of the quiescent inner solar corona ($r<1.25 R_\odot$) by means of tomographic reconstructions and magnetohydrodynamic simulations. We use differential emission measure tomography (DEMT) and the Alfv\'en Wave Solar Model (AWSoM), in their latest versions. Two target rotations were selected from the solar minimum between solar cycles (SCs) 23 and 24 and the declining phase of SC 24. We report in quantitative detail on the 3D thermodynamic structure of the core and outer layers of the streamer belt, and of the high latitude coronal holes (CH), as revealed by the DEMT analysis. We report on the presence of two types of structures within the streamer belt, loops with temperature decreasing/increasing with height (dubbed down/up loops), as reported first in previous DEMT studies. We also estimate the heating energy flux required at the coronal base to keep these structures stable, found to be or order $10^5 erg\, cm^{-2} s^{-1}$, consistently with previous DEMT and spectroscopic studies. We discuss how these findings are consistent with coronal dissipation of Alfv\'en waves. We compare the 3D results of DEMT and AWSoM in distinct magnetic structures. We show that the agreement between the products of both techniques is the best so far, with an overall agreement $\lesssim 20\%$, depending on the target rotation and the specific coronal region. In its current implementation the ASWsoM model can not reproduce down loops though. Also, in the source region of the fast and slow components of the solar wind, the electron density of the AWSoM model increases with latitude, opposite to the trend observed in DEMT reconstructions

Small-scale EUV features as the drivers of coronal upflows in the quiet Sun

Context. Coronal upflows in the quiet Sun are seen in a wide range of features, including jets and filament eruptions. The in situ measurements from Parker Solar Probe within ≈0.2 au have demonstrated that the solar wind is highly structured, showing abrupt and near-ubiquitous magnetic field reversals (i.e., switchbacks) on different timescales. The source of these structures has been associated with supergranular structures on the solar disc. This raises the question of whether there are additional small coronal features that contribute energy to the corona and produce plasma that potentially feeds into the solar wind. / Aims. During the Solar Orbiter first science perihelion, high-resolution images of the solar corona were recorded using the Extreme Ultraviolet High Resolution Imager (HRIEUV) from the Extreme Ultraviolet Imager (EUI). The Hinode spacecraft was also observing at the same location providing coronal spectroscopic measurements. Combining the two datasets allows us to determine the cause of the weak upflows observed in the quiet Sun and the associated activity. / Methods. We used a multi-spacecraft approach to characterise regions of upflows. The upflows were identified in the Fe XII emission line by the Hinode EUV Imaging Spectrometer (EIS). We then used imaging data from the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory (SDO/AIA) and the High Resolution Imagers (HRI) from EUI on board the Solar Orbiter to identify coronal features and magnetic field data from the SDO Helioseismic and Magnetic Imager (HMI). Interface Region Imaging Spectrograph (IRIS) observations were also used to understand the photospheric and chromospheric driving mechanisms. / Results. We have identified two regions of coronal upflows in the quiet Sun, with respective sizes and lifetimes of (20 Mm2, 20 min) and (180 Mm2, several hours), which are contrasting dynamic events. Both examples show weak flux cancellation, indicating that the source of the upflows and enhancements is related to the magnetic field changes. The first event, a larger upflow region, shows velocities of up to −8.6 km s−1 at the footpoint of a complex loop structure. We observe several distinct extreme ultraviolet (EUV) features including frequent loop brightenings and plasma blobs travelling along closed coronal loops. The second upflow region has velocities of up to −7.2 km s−1. Within it, a complex EUV feature that lasts for about 20 min can be seen. This main feature has several substructures. During its appearance, a clear mini-filament eruption takes place at its location, before the EUV feature disappears. / Conclusions. Two features, with contrasting properties, show upflows with comparable magnitudes. The first event, a complex loop structure, shares several similarities with active region upflows. The second one, a complex small-scale feature that could not have been well resolved with previous instruments, triggered a cascade of events, including a mini-filament that lead to a measurable upflow. This is remarkable for an EUV feature that many instruments can barely resolve. The complexity of the two events, including small loop brightenings and travelling plasma blobs for the first and EUV small-scale loops and mini-filament for the second one would not have been identifiable as the sources of upflow without an instrument with the spatial resolution of HRIEUV at this distance to the Sun. These results reinforce the importance of the smallest-scale features in the Sun and their potential relevance for and impact on the solar corona and the solar wind

Fungal Planet description sheets: 154–213

Novel species of microfungi described in the present study include the following from South Africa: Camarosporium aloes, Phaeococcomyces aloes and Phoma aloes from Aloe, C. psoraleae, Diaporthe psoraleae and D. psoraleae-pinnatae from Psoralea, Colletotrichum euphorbiae from Euphorbia, Coniothyrium prosopidis and Peyronellaea prosopidis from Prosopis, Diaporthe cassines from Cassine, D. diospyricola from Diospyros, Diaporthe maytenicola from Maytenus, Harknessia proteae from Protea, Neofusicoccum ursorum and N. cryptoaustrale from Eucalyptus, Ochrocladosporium adansoniae from Adansonia, Pilidium pseudoconcavum from Greyia radlkoferi, Stagonospora pseudopaludosa from Phragmites and Toxicocladosporium ficiniae from Ficinia. Several species were also described from Thailand, namely: Chaetopsina pini and C. pinicola from Pinus spp., Myrmecridium thailandicum from reed litter, Passalora pseudotithoniae from Tithonia, Pallidocercospora ventilago from Ventilago, Pyricularia bothriochloae from Bothriochloa and Sphaerulina rhododendricola from Rhododendron. Novelties from Spain include Cladophialophora multiseptata, Knufia tsunedae and Pleuroascus rectipilus from soil and Cyphellophora catalaunica from river sediments. Species from the USA include Bipolaris drechsleri from Microstegium, Calonectria blephiliae from Blephilia, Kellermania macrospora (epitype) and K. pseudoyuccigena from Yucca. Three new species are described from Mexico, namely Neophaeosphaeria agaves and K. agaves from Agave and Phytophthora ipomoeae from Ipomoea. Other African species include Calonectria mossambicensis from Eucalyptus (Mozambique), Harzia cameroonensis from an unknown creeper (Cameroon), Mastigosporella anisophylleae from Anisophyllea (Zambia) and Teratosphaeria terminaliae from Terminalia (Zimbabwe). Species from Europe include Auxarthron longisporum from forest soil (Portugal), Discosia pseudoartocreas from Tilia (Austria), Paraconiothyrium polonense and P. lycopodinum from Lycopodium (Poland) and Stachybotrys oleronensis from Iris (France). Two species of Chrysosporium are described from Antarctica, namely C. magnasporum and C. oceanitesii. Finally, Licea xanthospora is described from Australia, Hypochnicium huinayensis from Chile and Custingophora blanchettei from Uruguay. Novel genera of Ascomycetes include Neomycosphaerella from Pseudopentameris macrantha (South Africa), and Paramycosphaerella from Brachystegia sp. (Zimbabwe). Novel hyphomycete genera include Pseudocatenomycopsis from Rothmannia (Zambia), Neopseudocercospora from Terminalia (Zambia) and Neodeightoniella from Phragmites (South Africa), while Dimorphiopsis from Brachystegia (Zambia) represents a novel coelomycetous genus. Furthermore, Alanphillipsia is introduced as a new genus in the Botryosphaeriaceae with four species, A. aloes, A. aloeigena and A. aloetica from Aloe spp. and A. euphorbiae from Euphorbia sp. (South Africa). A new combination is also proposed for Brachysporium torulosum (Deightoniella black tip of banana) as Corynespora torulosa. Morphological and culture characteristics along with ITS DNA barcodes are provided for all taxa

Reviews and bibliographical notices

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A genomic catalog of Earth’s microbiomes

The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has enabled insights into the ecology and evolution of environmental and host-associated microbiomes. Here we applied this approach to >10,000 metagenomes collected from diverse habitats covering all of Earth’s continents and oceans, including metagenomes from human and animal hosts, engineered environments, and natural and agricultural soils, to capture extant microbial, metabolic and functional potential. This comprehensive catalog includes 52,515 metagenome-assembled genomes representing 12,556 novel candidate species-level operational taxonomic units spanning 135 phyla. The catalog expands the known phylogenetic diversity of bacteria and archaea by 44% and is broadly available for streamlined comparative analyses, interactive exploration, metabolic modeling and bulk download. We demonstrate the utility of this collection for understanding secondary-metabolite biosynthetic potential and for resolving thousands of new host linkages to uncultivated viruses. This resource underscores the value of genome-centric approaches for revealing genomic properties of uncultivated microorganisms that affect ecosystem processes

A genomic catalog of Earth’s microbiomes

The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has enabled insights into the ecology and evolution of environmental and host-associated microbiomes. Here we applied this approach to >10,000 metagenomes collected from diverse habitats covering all of Earth’s continents and oceans, including metagenomes from human and animal hosts, engineered environments, and natural and agricultural soils, to capture extant microbial, metabolic and functional potential. This comprehensive catalog includes 52,515 metagenome-assembled genomes representing 12,556 novel candidate species-level operational taxonomic units spanning 135 phyla. The catalog expands the known phylogenetic diversity of bacteria and archaea by 44% and is broadly available for streamlined comparative analyses, interactive exploration, metabolic modeling and bulk download. We demonstrate the utility of this collection for understanding secondary-metabolite biosynthetic potential and for resolving thousands of new host linkages to uncultivated viruses. This resource underscores the value of genome-centric approaches for revealing genomic properties of uncultivated microorganisms that affect ecosystem processes

Effect of isolation temperature on the characteristics of extracellular proteases produced by Antarctic bacteria

Protease-producing psychrotolerant bacteria were isolated from Antarctic biotopes on casein agar plates using different incubation temperatures. Most of the isolates were non-spore-forming Gram-negative motile rods with catalase activity, 30% were pigmented and none of them were glucose fermenters. All the strains were grown in liquid cultures at 20°C and protease secretion was tested using the azocasein method. Despite their capacity for production of a clear zone of hydrolysis in agar plates, some strains did not produce detectable levels of proteolytic activity in liquid cultures. The lowest apparent optimum temperature for protease activity found in culture supernatants was 40°C. Almost all the strains showed activation energy values about 10-20 kJ-mol?1 lower than that observed for a mesophilic Subtilisin. Most of the proteases showed optimal activity at neutral or alkaline pH values and developed a multiple-band profile on gelatine-SDS-PAGE. It was observed that the lower the strain isolation temperature was, the more stongly cold-adapted–in terms of optimal temperature and activation energy–were the proteases produced by them. This dependence of the characteristics of the proteases on the isolation temperature is an important factor to take into account in the design of screening programmes directed towards the isolation of psychrotolerant bacteria able to produce proteases strongly or weakly adapted to work in the cold. The Antarctic area explored proved to be a promising source of proteolytic bacteria with potential use in industrial processes to be carried out at low or moderate temperatures

Self-assembly of 2,3-dihydroxycholestane steroids into supramolecular organogels as a soft template for the in-situ generation of silicate nanomaterials

Supramolecular gels are an important and interesting class of soft materials that show great potential for many applications. Most of them have been discovered serendipitously, and understanding the supramolecular self-assembly that leads to the formation of the gel superstructure is the key to the directed design of new organogels. We report herein the organogelating property of four stereoisomers of the simple steroid 2,3-dihydroxycholestane. Only the isomer with the trans-diaxial hydroxy groups had the ability to gelate a broad variety of liquids and, thus, to be a super-organogelator for hydrocarbons. The scope of solvent gelation was analysed with regard to two solvent parameters, namely the Kamlet–Taft and the Hansen solubility parameters. The best correlation was observed with the Hansen approach that revealed the existence of two clear gelation zones. We propose a general model of self-assembly through multiple intermolecular hydrogen bonds between the 1,2-dihydroxy system, which is based on experimental data and computational simulations revealing the importance of the di-axial orientation of the hydroxy groups for the one-dimensional self-assembly. Under controlled conditions, the fibrillar superstructure of the organogel was successfully used as a template for the in-situ sol–gel polymerization of tetraethoxysilane and the further preparation of silica nanotubes. We propose that the driving forces for templating are hydrogen bonding and electrostatic interactions between the anionic silicate intermediate species and the self-assembled fibrillar network