60 research outputs found
Invistigating the effects of frp bars on the seismic behavior of reinforced concrete coupling beams
Sometimes, it is necessary to install regular openings like windows or doors in the shear walls. Such openings require special reinforcement. There are several methods for reinforcing deep beams, one of which is the use of fiber reinforced polymer bars. In this study, an experimental work on a coupled shear wall has been used to mode the system by using finite element method with ABAQUS software. The finite element model was established based on part of the experimental study and verified with the other parts of the experimental results. The comparison shows good agreement. In the study, three different types of fiber reinforced polymer bars were considered in improving the mechanical and structural behavior of RC coupling beams. Results of the finite element analysis showed the superiority of the CFRP bars in improving seismic behavior of the coupled shear wall comparing to GFRP and BFRP
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Parametric Modeling of Transverse Phase Space of an RF Photoinjector
High brightness electron beam sources such as rf photo-injectors as proposed for SASE FELs must consistently produce the desired beam quality. We report the results of a study in which a combined neural network (NN) and first-principles (FP) model is used to model the transverse phase space of the beam as a function of quadrupole strength, while beam charge, solenoid field, accelerator gradient, and linac voltage and phase are kept constant. The parametric transport matrix between the exit of the linac section and the spectrometer screen constitutes the FP component of the combined model. The NN block provides the parameters of the transport matrix as functions of quad current. Using real data from SLAC Gun Test Facility, we will highlight the significance of the constrained training of the NN block and show that the phase space of the beam is accurately modeled by the combined NN and FP model, while variations of beam matrix parameters with the quad current are correctly captured. We plan to extend the combined model in the future to capture the effects of variations in beam charge, solenoid field, and accelerator voltage and phase
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Public Goods Games in Disease Evolution and Spread
Cooperation arises in nature at every scale, from within cells to entire ecosystems. In the framework of evolutionary game theory, public goods games (PGGs) are used to analyse scenarios where individuals can cooperate or defect, and can predict when and how these behaviours emerge. However, too few examples motivate the transferal of knowledge from one application of PGGs to another. Here, we focus on PGGs arising in disease modelling of cancer evolution and the spread of infectious diseases. We use these two systems as case studies for the development of the theory and applications of PGGs, which we succinctly review and compare. We also posit that applications of evolutionary game theory to decision-making in cancer, such as interactions between a clinician and a tumour, can learn from the PGGs studied in epidemiology, where cooperative behaviours such as quarantine and vaccination compliance have been more thoroughly investigated. Furthermore, instances of cellular-level cooperation observed in cancers point to a corresponding area of potential interest for modellers of other diseases, be they viral, bacterial or otherwise. We aim to demonstrate the breadth of applicability of PGGs in disease modelling while providing a starting point for those interested in quantifying cooperation arising in healthcare
Genome-scale constraint-based modeling of Geobacter metallireducens
Background: Geobacter metallireducens was the first organism that can be grown in pure culture to completely oxidize organic compounds with Fe(III) oxide serving as electron acceptor. Geobacter species, including G. sulfurreducens and G. metallireducens, are used for bioremediation and electricity generation from waste organic matter and renewable biomass. The constraint-based modeling approach enables the development of genome-scale in silico models that can predict the behavior of complex biological systems and their responses to the environments. Such a modeling approach was applied to provide physiological and ecological insights on the metabolism of G. metallireducens.
Results: The genome-scale metabolic model of G. metallireducens was constructed to include 747 genes and 697 reactions. Compared to the G. sulfurreducens model, the G. metallireducens metabolic model contains 118 unique reactions that reflect many of G. metallireducens\u27 specific metabolic capabilities. Detailed examination of the G. metallireducens model suggests that its central metabolism contains several energy-inefficient reactions that are not present in the G. sulfurreducens model. Experimental biomass yield of G. metallireducens growing on pyruvate was lower than the predicted optimal biomass yield. Microarray data of G. metallireducens growing with benzoate and acetate indicated that genes encoding these energy-inefficient reactions were up-regulated by benzoate. These results suggested that the energy-inefficient reactions were likely turned off during G. metallireducens growth with acetate for optimal biomass yield, but were up-regulated during growth with complex electron donors such as benzoate for rapid energy generation. Furthermore, several computational modeling approaches were applied to accelerate G. metallireducens research. For example, growth of G. metallireducens with different electron donors and electron acceptors were studied using the genome-scale metabolic model, which provided a fast and cost-effective way to understand the metabolism of G. metallireducens.
Conclusion: We have developed a genome-scale metabolic model for G. metallireducens that features both metabolic similarities and differences to the published model for its close relative, G. sulfurreducens. Together these metabolic models provide an important resource for improving strategies on bioremediation and bioenergy generation
Tissue Engineering in Oral and Maxillofacial Surgery : From Lab to Clinics
Regenerative medicine aims at the functional restoration of tissue malfunction, damage or loss, and can be divided into three main approaches. Firstly, the cell-based therapies, where cells are administered to re-establish a tissue either directly or through paracrine functions. Secondly, the often referred to as classical tissue engineering, consisting of the combined use of cells and a bio-degradable scaffold to form tissue. Thirdly, there are material-based approaches, which have made significant advances which rely on biodegradable materials, often functionalized with cellular functions (De Jong et al. 2014). In 1993, Langer and Vacanti, determined tissue engineering as an “interdisciplinary field that applies the principles of engineering and the life sciences toward the development of biological substitutes that restore, maintain, or improve tissue function”. They published this definition in Science in 1993. Tissue engineering has been classically thought to consist of three elements: supporting scaffold, cells and regulating factors such as growth factors (Fig. 1). Depending on the tissue to be regenerated, all three vary. Currently, it is known, that many other factors may have an effect on the outcome of the regenerate. These include factors enabling angiogenesis, physical stimulation, culture media, gene delivery and methods to deliver patient specific implants (PSI) (Fig. 2). During the past two decades, major obstacles have been tackled and tissue engineering is currently being used clinically in some applications while in others it is just taking its first baby steps.Peer reviewe
Photodegradation of organic pollutants RhB dye using UV simulated sunlight on ceria based TiO2 nanomaterials for antibacterial applications
To photo-catalytically degrade RhB dye using solar irradiation, CeO2 doped TiO2 nanocomposites were synthesized hydrothermally at 700 °C for 9 hrs. All emission spectra showed a prominent band centered at 442 nm that was attributed to oxygen related defects in the CeO2-TiO2 nanocrystals. Two sharp absorption bands at 1418 cm−1 and 3323 cm−1 were attributed to the deformation and stretching vibration, and bending vibration of the OH group of water physisorbed to TiO2, respectively. The photocatalytic activities of Ce-TiO2 nanocrystals were investigated through the degradation of RhB under UV and UV+ visible light over a period of 8 hrs. After 8 hrs, the most intense absorption peak at 579 nm disappeared under the highest photocatalytic activity and 99.89% of RhB degraded under solar irradiation. Visible light-activated TiO2 could be prepared from metal-ion incorporation, reduction of TiO2, non-metal doping or sensitizing of TiO2 using dyes. Studying the antibacterial activity of Ce-TiO2 nanocrystals against E. coli revealed significant activity when 10 μg was used, suggesting that it can be used as an antibacterial agent. Its effectiveness is likely related to its strong oxidation activity and superhydrophilicity. This study also discusses the mechanism of heterogeneous photocatalysis in the presence of TiO2
Towards the design of 3D multiscale instructive tissue engineering constructs: Current approaches and trends
The design of 3D constructs with adequate properties to instruct and guide cells both in vitro and in vivo is one of the major focuses of tissue engineering. Successful tissue regeneration depends on the favorable crosstalk between the supporting structure, the cells and the host tissue so that a balanced matrix production and degradation is achieved. Herein, the major occurring events and players in normal and regenerative tissue are overviewed. These have been inspiring the selection or synthesis of instructive cues to include into the 3D constructs. We further highlight the importance of a multiscale perception of the range of features that can be included on the biomimetic structures. Lastly, we focus on the current and developing tissue-engineering approaches for the preparation of such 3D constructs: top-down, bottom-up and integrative. Bottom-up and integrative approaches present a higher potential for the design of tissue engineering devices with multiscale features and higher biochemichal control than top-down strategies, and are the main focus of this review.The research leading to these results has received funding from the European Research Council grant agreement ERC-2012-ADG-20120216-321266 for the project ComplexiTE. Portuguese Foundation for Science and Technology is gratefully acknowledged for the fellowship of Sara M. Oliveira (SFRH/BD/70107/2010)
Synthesis and characterization of covalently linked graphene/chitosan composites
Chitosan, a naturally derived polysaccharide, was covalently linked to chemically converted graphene (CCG) and the properties of the resulting composites were investigated. The composites were prepared using a stable dispersion of CCG in aqueous solvent. The CCG sheets are stabilised in solution by a small number of peripheral charged groups that can be used to form amide linkages with the polymer matrix. Apart from processability and swellability, the synthesized composites exhibited improved mechanical properties and conductivity by the addition of graphene. Graphene incorporation also introduced a control over the extent of swelling in the composites. The synthesized graphene/composites are promising materials for a variety of applications, for example as conducting substrates for the electrically stimulated growth of cells
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