A rulebook for peptide control of legume–microbe endosymbioses

Plants engage in mutually beneficial relationships with microbes, such as arbuscular mycorrhizal fungi or nitrogen-fixing rhizobia, for optimized nutrient acquisition. In return, the microbial symbionts receive photosynthetic carbon from the plant. Both symbioses are regulated by the plant nutrient status, indicating the existence of signaling pathways that allow the host to fine-tune its interactions with the beneficial microbes depending on its nutrient requirements. Peptide hormones coordinate a plethora of developmental and physiological processes and, recently, various peptide families have gained special attention as systemic and local regulators of plant–microbe interactions and nutrient homeostasis. In this review, we identify five \u27rules\u27 or guiding principles that govern peptide function during symbiotic plant–microbe interactions, and highlight possible points of integration with nutrient acquisition pathways

Data sets for author name disambiguation: an empirical analysis and a new resource

Data sets of publication meta data with manually disambiguated author names play an important role in current author name disambiguation (AND) research. We review the most important data sets used so far, and compare their respective advantages and shortcomings. From the results of this review, we derive a set of general requirements to future AND data sets. These include both trivial requirements, like absence of errors and preservation of author order, and more substantial ones, like full disambiguation and adequate representation of publications with a small number of authors and highly variable author names. On the basis of these requirements, we create and make publicly available a new AND data set, SCAD-zbMATH. Both the quantitative analysis of this data set and the results of our initial AND experiments with a naive baseline algorithm show the SCAD-zbMATH data set to be considerably different from existing ones. We consider it a useful new resource that will challenge the state of the art in AND and benefit the AND research community

The comfortable roller coaster -- on the shape of tracks with constant normal force

A particle that moves along a smooth track in a vertical plane is influenced by two forces: gravity and normal force. The force experienced by roller coaster riders is the normal force, so a natural question to ask is: what shape of the track gives a normal force of constant magnitude? Here we solve this problem. It turns out that the solution is related to the Kepler problem; the trajectories in velocity space are conic sections.Comment: 10 pages, 4 figure

A new approach to perturbation theory for a Dirac particle in a central field

The explicit semiclassical treatment of logarithmic perturbation theory for the bound-state problem within the framework of the Dirac equation is developed. Avoiding disadvantages of the standard approach in the description of exited states, new handy recursion formulae with the same simple form both for ground and exited states have been obtained. As an example, the perturbation expansions for the energy eigenvalues for the Yukawa potential containing the vector part as well as the scalar component are considered.Comment: 12 pages, LaTe

In search of lost introns

Many fundamental questions concerning the emergence and subsequent evolution of eukaryotic exon-intron organization are still unsettled. Genome-scale comparative studies, which can shed light on crucial aspects of eukaryotic evolution, require adequate computational tools. We describe novel computational methods for studying spliceosomal intron evolution. Our goal is to give a reliable characterization of the dynamics of intron evolution. Our algorithmic innovations address the identification of orthologous introns, and the likelihood-based analysis of intron data. We discuss a compression method for the evaluation of the likelihood function, which is noteworthy for phylogenetic likelihood problems in general. We prove that after $O(nL)$ preprocessing time, subsequent evaluations take $O(nL/\log L)$ time almost surely in the Yule-Harding random model of $n$-taxon phylogenies, where $L$ is the input sequence length. We illustrate the practicality of our methods by compiling and analyzing a data set involving 18 eukaryotes, more than in any other study to date. The study yields the surprising result that ancestral eukaryotes were fairly intron-rich. For example, the bilaterian ancestor is estimated to have had more than 90% as many introns as vertebrates do now

Influence of enhanced Asian NOx emissions on ozone in the upper troposphere and lower stratosphere in chemistry–climate model simulations

The Asian summer monsoon (ASM) anticyclone is the most pronounced circulation pattern in the upper troposphere and lower stratosphere (UTLS) during northern hemispheric summer. ASM convection plays an important role in efficient vertical transport from the surface to the upper-level anticyclone. In this paper we investigate the potential impact of enhanced anthropogenic nitrogen oxide (NOx) emissions on the distribution of ozone in the UTLS using the fully coupled aerosol–chemistry–climate model, ECHAM5-HAMMOZ. Ozone in the UTLS is influenced both by the convective uplift of ozone precursors and by the uplift of enhanced-NOx-induced tropospheric ozone anomalies. We performed anthropogenic NOx emission sensitivity experiments over India and China. In these simulations, covering the years 2000–2010, anthropogenic NOx emissions have been increased by 38 % over India and by 73 % over China with respect to the emission base year 2000. These emission increases are comparable to the observed linear trends of 3.8 % per year over India and 7.3 % per year over China during the period 2000 to 2010. Enhanced NOx emissions over India by 38 % and China by 73 % increase the ozone radiative forcing in the ASM anticyclone (15–40° N, 60–120° E) by 16.3 and 78.5 mW m−2 respectively. These elevated NOx emissions produce significant warming over the Tibetan Plateau and increase precipitation over India due to a strengthening of the monsoon Hadley circulation. However, increase in NOx emissions over India by 73 % (similar to the observed increase over China) results in large ozone production over the Indo-Gangetic Plain and Tibetan Plateau. The higher ozone concentrations, in turn, induce a reversed monsoon Hadley circulation and negative precipitation anomalies over India. The associated subsidence suppresses vertical transport of NOx and ozone into the ASM anticyclone

Recent Developments

Context. Tracing nuclear inflows and outflows in active galactic nuclei (AGNs), determining the mass of gas involved in them, and their impact on the host galaxy and nuclear black hole requires 3D imaging studies of both the ionized and molecular gas. Aims. We map the distribution and kinematics of molecular and ionized gas in a sample of active galaxies to quantify the nuclear inflows and outflows. Here, we analyze the nuclear kinematics of NGC 1566 via ALMA observations of the CO J:2-1 emission at 24 pc spatial and ∼2.6 km s−1 spectral resolution, and Gemini-GMOS/IFU observations of ionized gas emission lines and stellar absorption lines at similar spatial resolution, and 123 km s−1 of intrinsic spectral resolution. Methods. The morphology and kinematics of stellar, molecular (CO), and ionized ([N II]) emission lines are compared to the expectations from rotation, outflows, and streaming inflows. Results. While both ionized and molecular gas show rotation signatures, there are significant non-circular motions in the innermost 200 pc and along spiral arms in the central kpc (CO). The nucleus shows a double-peaked CO profile (full width at zero intensity of 200 km s−1), and prominent (∼80 km s−1) blue- and redshifted lobes are found along the minor axis in the inner arcseconds. Perturbations by the large-scale bar can qualitatively explain all features in the observed velocity field. We thus favor the presence of a molecular outflow in the disk with true velocities of ∼180 km s−1 in the nucleus and decelerating to 0 by ∼72 pc. The implied molecular outflow rate is 5.6 M⊙ yr−1, with this gas accumulating in the nuclear 2″ arms. The ionized gas kinematics support an interpretation of a similar but more spherical outflow in the inner 100 pc, with no signs of deceleration. There is some evidence of streaming inflows of ∼50 km s−1 along specific spiral arms, and the estimated molecular mass inflow rate, ∼0.1 M⊙ yr−1, is significantly higher than the SMBH accretion rate (ṁ = 4.8 × 10−5 M⊙ yr−1)