The Effect of Map Boundary on Estimates of Landscape Resistance to Animal Movement

BACKGROUND: Artificial boundaries on a map occur when the map extent does not cover the entire area of study; edges on the map do not exist on the ground. These artificial boundaries might bias the results of animal dispersal models by creating artificial barriers to movement for model organisms where there are no barriers for real organisms. Here, we characterize the effects of artificial boundaries on calculations of landscape resistance to movement using circuit theory. We then propose and test a solution to artificially inflated resistance values whereby we place a buffer around the artificial boundary as a substitute for the true, but unknown, habitat. METHODOLOGY/PRINCIPAL FINDINGS: We randomly assigned landscape resistance values to map cells in the buffer in proportion to their occurrence in the known map area. We used circuit theory to estimate landscape resistance to organism movement and gene flow, and compared the output across several scenarios: a habitat-quality map with artificial boundaries and no buffer, a map with a buffer composed of randomized habitat quality data, and a map with a buffer composed of the true habitat quality data. We tested the sensitivity of the randomized buffer to the possibility that the composition of the real but unknown buffer is biased toward high or low quality. We found that artificial boundaries result in an overestimate of landscape resistance. CONCLUSIONS/SIGNIFICANCE: Artificial map boundaries overestimate resistance values. We recommend the use of a buffer composed of randomized habitat data as a solution to this problem. We found that resistance estimated using the randomized buffer did not differ from estimates using the real data, even when the composition of the real data was varied. Our results may be relevant to those interested in employing Circuitscape software in landscape connectivity and landscape genetics studies

A Niche-Based Framework to Assess Current Monitoring of European Forest Birds and Guide Indicator Species' Selection

Concern that European forest biodiversity is depleted and declining has provoked widespread efforts to improve management practices. To gauge the success of these actions, appropriate monitoring of forest ecosystems is paramount. Multi-species indicators are frequently used to assess the state of biodiversity and its response to implemented management, but generally applicable and objective methodologies for species' selection are lacking. Here we use a niche-based approach, underpinned by coarse quantification of species' resource use, to objectively select species for inclusion in a pan-European forest bird indicator. We identify both the minimum number of species required to deliver full resource coverage and the most sensitive species' combination, and explore the trade-off between two key characteristics, sensitivity and redundancy, associated with indicators comprising different numbers of species. We compare our indicator to an existing forest bird indicator selected on the basis of expert opinion and show it is more representative of the wider community. We also present alternative indicators for regional and forest type specific monitoring and show that species' choice can have a significant impact on the indicator and consequent projections about the state of the biodiversity it represents. Furthermore, by comparing indicator sets drawn from currently monitored species and the full forest bird community, we identify gaps in the coverage of the current monitoring scheme. We believe that adopting this niche-based framework for species' selection supports the objective development of multi-species indicators and that it has good potential to be extended to a range of habitats and taxa

Predator traits determine food-web architecture across ecosystems

Predator–prey interactions in natural ecosystems generate complex food webs that have a simple universal body-size architecture where predators are systematically larger than their prey. Food-web theory shows that the highest predator–prey body-mass ratios found in natural food webs may be especially important because they create weak interactions with slow dynamics that stabilize communities against perturbations and maintain ecosystem functioning. Identifying these vital interactions in real communities typically requires arduous identification of interactions in complex food webs. Here, we overcome this obstacle by developing predator-trait models to predict average body-mass ratios based on a database comprising 290 food webs from freshwater, marine and terrestrial ecosystems across all continents. We analysed how species traits constrain body-size architecture by changing the slope of the predator–prey body-mass scaling. Across ecosystems, we found high body-mass ratios for predator groups with specific trait combinations including (1) small vertebrates and (2) large swimming or flying predators. Including the metabolic and movement types of predators increased the accuracy of predicting which species are engaged in high body-mass ratio interactions. We demonstrate that species traits explain striking patterns in the body-size architecture of natural food webs that underpin the stability and functioning of ecosystems, paving the way for community-level management of the most complex natural ecosystems

Post-Hoc Pattern-Oriented Testing and Tuning of an Existing Large Model:Lessons from the Field Vole

Pattern-oriented modeling (POM) is a general strategy for modeling complex systems. In POM, multiple patterns observed at different scales and hierarchical levels are used to optimize model structure, to test and select sub-models of key processes, and for calibration. So far, POM has been used for developing new models and for models of low to moderate complexity. It remains unclear, though, whether the basic idea of POM to utilize multiple patterns, could also be used to test and possibly develop existing and established models of high complexity. Here, we use POM to test, calibrate, and further develop an existing agent-based model of the field vole (Microtus agrestis), which was developed and tested within the ALMaSS framework. This framework is complex because it includes a high-resolution representation of the landscape and its dynamics, of the individual’s behavior, and of the interaction between landscape and individual behavior. Results of fitting to the range of patterns chosen were generally very good, but the procedure required to achieve this was long and complicated. To obtain good correspondence between model and the real world it was often necessary to model the real world environment closely. We therefore conclude that post-hoc POM is a useful and viable way to test a highly complex simulation model, but also warn against the dangers of over-fitting to real world patterns that lack details in their explanatory driving factors. To overcome some of these obstacles we suggest the adoption of open-science and open

Structural network properties of niche-overlap graphs

The structure of networks has always been interesting for researchers. Investigating their unique architecture allows to capture insights and to understand the function and evolution of these complex systems. Ecological networks such as food-webs and niche-overlap graphs are considered as complex systems. The main purpose of this work is to compare the topology of 15 real niche-overlap graphs with random ones. Five measures are treated in this study: (1) the clustering coefficient, (2) the between ness centrality, (3) the assortativity coefficient, (4) the modularity and (5) the number of chord less cycles. Significant differences between real and random networks are observed. Firstly, we show that niche-overlap graphs display a higher clustering and a higher modularity compared to random networks. Moreover we find that random networks have barely nodes that belong to a unique sub graph (i.e. between ness centrality equal to 0) and highlight the presence of a small number of chord less cycles compared to real networks. These analyses may provide new insights in the structure of these real niche-overlap graphs and may give important implications on the functional organization of species competing for some resources and on the dynamics of these systems

Structural Network Properties of Niche-Overlap Graphs

Abstract-The structure of networks has always been interesting for researchers. Investigating their unique architecture allows to capture insights and to understand the function and evolution of these complex systems. Ecological networks such as food-webs and niche-overlap graphs are considered as complex systems. The main purpose of this work is to compare the topology of 15 real niche-overlap graphs with random ones. Five measures are treated in this study: (1) the clustering coefficient, (2) the betweenness centrality, (3) the assortativity coefficient, (4) the modularity and (5) the number of chordless cycles. Significant differences between real and random networks are observed. Firstly, we show that niche-overlap graphs display a higher clustering and a higher modularity compared to random networks. Moreover we find that random networks have barely nodes that belong to a unique subgraph (i.e betweenness centrality equal to 0) and highlight the presence of a small number of chordless cycles compared to real networks. These analyses may provide new insights in the structure of these real niche-overlap graphs and may give important implications on the functional organization of species competing for some resources and on the dynamics of these systems

Parasitoids may determine plant fitness - A mathematical model based on experimental data

The present paper deals with the problem of enhancement of plant fitness due to parasitization of herbivores. The experimental evidence for such situations is reviewed. Two mathematical models, plant-herbivore (two trophic) and plant-herbivore-parasitoid (three trophic) are considered to analyse the experimental observations. The effect of environmental fluctuation in the tritrophic system is also observed and optimum values of the inaccessible parameters involved in the system are estimated for purposes of biological control

Network data

Network dat

This file provides the code (embedded), the analyses and explanations on the thought process behind the analyses. from Shrinking Alpine chamois: Higher spring temperatures over the last 27 years in Switzerland are linked to a 3 kg reduction in body mass of yearlings

Supplementary Material

Nestling barn owls beg more intensely in the presence of their mother than in the presence of their father

Nestling begging behaviour may be an honest signal of need used by parents to adjust optimally both feeding rate and within-brood food allocation. Although several studies showed that mothers and fathers can be differentially responsive to nestling begging behaviour with one parent showing a stronger tendency to feed the offspring that beg the most, little information is yet available on whether offspring beg for food at different intensities from the mother than father. In the present study, we investigated in nestling barn owls whether the intensity of vocal begging behaviour in the presence of the mother and in the presence of the father is different. A difference is expected because reproductive tasks are divided between the sexes with fathers bringing more food items to the nest than mothers. The results show that although mothers transfer their prey item to one of the offspring more rapidly than fathers once in their nestbox, nestlings begged more intensely in the presence of their mother than in the presence of their father. To our knowledge, this is the first empirical evidence that offspring vocalize to different levels in the presence of their mother than in the presence of their father