486 research outputs found
Near-infrared spectroscopy of the Blue Compact Dwarf galaxy Markarian 59
We present near-infrared (NIR) spectroscopic observations of the blue compact
dwarf (BCD) galaxy Mrk 59, obtained with the TripleSpec spectrograph mounted on
the 3.5m APO telescope. The NIR spectrum of Mrk 59, which covers the 0.90 -
2.40 micron wavelength range, shows atomic hydrogen, molecular hydrogen,
helium, sulfur and iron emission lines. The NIR data have been supplemented by
a SDSS optical spectrum. We found extinction in the BCD to be low [A(V)=0.24
mag] and to be the same in both the optical and NIR ranges. The NIR light does
not reveal hidden star formation. The H2 emission comes from dense clumps and
the H2 vibrational emission line intensities can be accounted for by photon
excitation. No shock excitation is needed. A CLOUDY photoinization model of Mrk
59 reproduces well the observed optical and NIR emission line fluxes. There is
no need to invoke sources of ionization other than stellar radiation.The [FeII]
1.257 and 1.643 micron emission lines, often used as supernova shock indicators
in low-excitation high-metallicity starburst galaxies, cannot play such a role
in high-excitation low-metallicity HII regions such as Mrk 59.Comment: 23 pages, 3 figures, accepted for publication in the Astrophysical
Journa
Protein Pattern Formation
Protein pattern formation is essential for the spatial organization of many
intracellular processes like cell division, flagellum positioning, and
chemotaxis. A prominent example of intracellular patterns are the oscillatory
pole-to-pole oscillations of Min proteins in \textit{E. coli} whose biological
function is to ensure precise cell division. Cell polarization, a prerequisite
for processes such as stem cell differentiation and cell polarity in yeast, is
also mediated by a diffusion-reaction process. More generally, these functional
modules of cells serve as model systems for self-organization, one of the core
principles of life. Under which conditions spatio-temporal patterns emerge, and
how these patterns are regulated by biochemical and geometrical factors are
major aspects of current research. Here we review recent theoretical and
experimental advances in the field of intracellular pattern formation, focusing
on general design principles and fundamental physical mechanisms.Comment: 17 pages, 14 figures, review articl
Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells
5-Methylcytosine (5mC) is an epigenetic modificationinvolved in regulation of gene activity during differentiation. Tet dioxygenases oxidize 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC). Both 5fC and 5caC can be excised from DNA by thymine-DNA glycosylase (TDG) followed by regeneration of unmodified cytosine via the base excision repair pathway. Despite evidence that this mechanism is operative in embryonic stem cells, the role of TDG-dependent demethylation in differentiation and development is currently unclear. Here, we demonstrate that widespread oxidation of 5hmC to 5caC occurs in postimplantation mouse embryos. We show that 5fC and 5caC are transiently accumulated during lineage specification of neural stem cells (NSCs) in culture and invivo. Moreover, 5caC is enriched at the cell-type-specific promoters during differentiation of NSCs, and TDG knockdown leads to increased 5fC/5caC levels in differentiating NSCs. Our data suggest that active demethylation contributes to epigenetic reprogramming determining lineage specification in embryonic brain. © 2014 The Authors
Weak ferromagnetism with very large canting in a chiral lattice: (pyrimidine)2FeCl2
The transition metal coordination compound (pyrimidine)2FeCl2 crystallizes in
a chiral lattice, space group I 4_1 2 2 (or I4_3 2 2). Combined magnetization,
Mossbauer spectroscopy and powder neutron diffraction studies reveal that it is
a canted antiferromagnet below T_N = 6.4 K with an unusually large canting of
the magnetic moments of 14 deg. from their general antiferromagnetic alignment,
one of the largest reported to date. This results in weak ferromagnetism with a
ferromagnetic component of 1 mu_B. The large canting is due to the interplay
between the antiferromagnetic exchange interaction and the local single-ion
anisotropy in the chiral lattice. The magnetically ordered structure of
(pyrimidine)2FeCl2, however, is not chiral. The implications of these findings
for the search of molecule based materials exhibiting chiral magnetic ordering
is discussed.Comment: 6 pages, 5 figure
Imaging Jupiter's radiation belts down to 127 MHz with LOFAR
Context. Observing Jupiter's synchrotron emission from the Earth remains
today the sole method to scrutinize the distribution and dynamical behavior of
the ultra energetic electrons magnetically trapped around the planet (because
in-situ particle data are limited in the inner magnetosphere). Aims. We perform
the first resolved and low-frequency imaging of the synchrotron emission with
LOFAR at 127 MHz. The radiation comes from low energy electrons (~1-30 MeV)
which map a broad region of Jupiter's inner magnetosphere. Methods (see article
for complete abstract) Results. The first resolved images of Jupiter's
radiation belts at 127-172 MHz are obtained along with total integrated flux
densities. They are compared with previous observations at higher frequencies
and show a larger extent of the synchrotron emission source (>=4 ). The
asymmetry and the dynamic of east-west emission peaks are measured and the
presence of a hot spot at lambda_III=230 {\deg} 25 {\deg}. Spectral flux
density measurements are on the low side of previous (unresolved) ones,
suggesting a low-frequency turnover and/or time variations of the emission
spectrum. Conclusions. LOFAR is a powerful and flexible planetary imager. The
observations at 127 MHz depict an extended emission up to ~4-5 planetary radii.
The similarities with high frequency results reinforce the conclusion that: i)
the magnetic field morphology primarily shapes the brightness distribution of
the emission and ii) the radiating electrons are likely radially and
latitudinally distributed inside about 2 . Nonetheless, the larger extent
of the brightness combined with the overall lower flux density, yields new
information on Jupiter's electron distribution, that may shed light on the
origin and mode of transport of these particles.Comment: 10 pages, 12 figures, accepted for publication in A&A (27/11/2015) -
abstract edited because of limited character
Population Based Model of Human Embryonic Stem Cell (hESC) Differentiation during Endoderm Induction
The mechanisms by which human embryonic stem cells (hESC) differentiate to endodermal lineage have not been extensively studied. Mathematical models can aid in the identification of mechanistic information. In this work we use a population-based modeling approach to understand the mechanism of endoderm induction in hESC, performed experimentally with exposure to Activin A and Activin A supplemented with growth factors (basic fibroblast growth factor (FGF2) and bone morphogenetic protein 4 (BMP4)). The differentiating cell population is analyzed daily for cellular growth, cell death, and expression of the endoderm proteins Sox17 and CXCR4. The stochastic model starts with a population of undifferentiated cells, wherefrom it evolves in time by assigning each cell a propensity to proliferate, die and differentiate using certain user defined rules. Twelve alternate mechanisms which might describe the observed dynamics were simulated, and an ensemble parameter estimation was performed on each mechanism. A comparison of the quality of agreement of experimental data with simulations for several competing mechanisms led to the identification of one which adequately describes the observed dynamics under both induction conditions. The results indicate that hESC commitment to endoderm occurs through an intermediate mesendoderm germ layer which further differentiates into mesoderm and endoderm, and that during induction proliferation of the endoderm germ layer is promoted. Furthermore, our model suggests that CXCR4 is expressed in mesendoderm and endoderm, but is not expressed in mesoderm. Comparison between the two induction conditions indicates that supplementing FGF2 and BMP4 to Activin A enhances the kinetics of differentiation than Activin A alone. This mechanistic information can aid in the derivation of functional, mature cells from their progenitors. While applied to initial endoderm commitment of hESC, the model is general enough to be applicable either to a system of adult stem cells or later stages of ESC differentiation
Genomics and biochemical analyses reveal a metabolon key to ÎČ-L-ODAP biosynthesis in Lathyrus sativus
Grass pea (Lathyrus sativus L.) is a rich source of protein cultivated as an insurance crop in Ethiopia, Eritrea, India, Bangladesh, and Nepal. Its resilience to both drought and flooding makes it a promising crop for ensuring food security in a changing climate. The lack of genetic resources and the cropâs association with the disease neurolathyrism have limited the cultivation of grass pea. Here, we present an annotated, long read-based assembly of the 6.5 Gbp L. sativus genome. Using this genome sequence, we have elucidated the biosynthetic pathway leading to the formation of the neurotoxin, ÎČ-L-oxalyl-2,3-diaminopropionic acid (ÎČ-L-ODAP). The final reaction of the pathway depends on an interaction between L. sativus acyl-activating enzyme 3 (LsAAE3) and a BAHD-acyltransferase (LsBOS) that form a metabolon activated by CoA to produce ÎČ-L-ODAP. This provides valuable insight into the best approaches for developing varieties which produce substantially less toxi
A Tethered Bilayer Assembled on Top of Immobilized Calmodulin to Mimic Cellular Compartmentalization
International audienceBACKGROUND: Biomimetic membrane models tethered on solid supports are important tools for membrane protein biochemistry and biotechnology. The supported membrane systems described up to now are composed of a lipid bilayer tethered or not to a surface separating two compartments: a "trans" side, one to a few nanometer thick, located between the supporting surface and the membrane; and a "cis" side, above the synthetic membrane, exposed to the bulk medium. We describe here a novel biomimetic design composed of a tethered bilayer membrane that is assembled over a surface derivatized with a specific intracellular protein marker. This multilayered biomimetic assembly exhibits the fundamental characteristics of an authentic biological membrane in creating a continuous yet fluid phospholipidic barrier between two distinct compartments: a "cis" side corresponding to the extracellular milieu and a "trans" side marked by a key cytosolic signaling protein, calmodulin. METHODOLOGY/PRINCIPAL FINDINGS: We established and validated the experimental conditions to construct a multilayered structure consisting in a planar tethered bilayer assembled over a surface derivatized with calmodulin. We demonstrated the following: (i) the grafted calmodulin molecules (in trans side) were fully functional in binding and activating a calmodulin-dependent enzyme, the adenylate cyclase from Bordetella pertussis; and (ii) the assembled bilayer formed a continuous, protein-impermeable boundary that fully separated the underlying calmodulin (trans side) from the above medium (cis side). CONCLUSIONS: The simplicity and robustness of the tethered bilayer structure described here should facilitate the elaboration of biomimetic membrane models incorporating membrane embedded proteins and key cytoplasmic constituents. Such biomimetic structures will also be an attractive tool to study translocation across biological membranes of proteins or other macromolecules
Der Umzug der Menschheit: Die transformative Kraft der StÀdte
Die Wucht der derzeitigen Urbanisierungsdynamik und ihre Auswirkungen sind so groĂ, dass sich weltweit StĂ€dte, Stadtgesellschaften, Regierungen und Internationale Organisationen diesem Trend stellen mĂŒssen. Ein âWeiter so wie bisherâ, wĂŒrde ohne gestaltende Urbanisierungspolitik zu einer nicht-nachhaltigen Welt-StĂ€dte-Gesellschaft fĂŒhren. Nur wenn StĂ€dte und Stadtgesellschaften ausreichend handlungsfĂ€hig werden, können sie ihre Kraft fĂŒr eine nachhaltige Entwicklung entfalten: In den StĂ€dten wird sich entscheiden, ob die GroĂe Transformation zur Nachhaltigkeit gelingt. In diesem Buch werden die Erfolgsbedingungen dafĂŒr diskutiert
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