8,787 research outputs found
Gallus GBrowse: a unified genomic database for the chicken
Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource includes predicted genes and Gene Ontology (GO) terms, links to Gallus In Situ Hybridization Analysis (GEISHA), Unigene and Reactome, the genomic positions of chicken genetic markers, SNPs and microarray probes, and mappings from turkey, condor and zebra finch DNA and EST sequences to the chicken genome. We also provide a BLAT server (http://birdbase.net/cgi-bin/webBlat) for matching user-provided sequences to the chicken genome. These tools make the Gallus GBrowse server a valuable resource for researchers seeking genomic information regarding the chicken and other avian species
Sox9 Transcriptionally Represses Spp1 to Prevent Matrix Mineralization in Maturing Heart Valves and Chondrocytes
Sox9 is an SRY-related transcription factor required for expression of cartilaginous genes in the developing skeletal system and heart valve structures. In contrast to positively regulating cartilaginous matrix, Sox9 also negatively regulates matrix mineralization associated with bone formation. While the transcriptional activation of Sox9 target genes during chondrogenesis has been characterized, the mechanisms by which Sox9 represses osteogenic processes are not so clear. Using ChIP-on-chip and luciferase assays we show that Sox9 binds and represses transactivation of the osteogenic glycoprotein Spp1. In addition, Sox9 knockdown in post natal mouse heart valve explants and rib chondrocyte cultures promotes Spp1 expression and matrix mineralization, while attenuating expression of cartilage genes Type II Collagen and Cartilage Link Protein. Further, we show that Spp1 is required for matrix mineralization induced by Sox9 knockdown. These studies provide insights into the molecular mechanisms by which Sox9 prevents pathologic matrix mineralization in tissues that must remain cartilaginous
Feasibility study for a numerical aerodynamic simulation facility. Volume 1
A Numerical Aerodynamic Simulation Facility (NASF) was designed for the simulation of fluid flow around three-dimensional bodies, both in wind tunnel environments and in free space. The application of numerical simulation to this field of endeavor promised to yield economies in aerodynamic and aircraft body designs. A model for a NASF/FMP (Flow Model Processor) ensemble using a possible approach to meeting NASF goals is presented. The computer hardware and software are presented, along with the entire design and performance analysis and evaluation
A Binary Millisecond Pulsar in Globular Cluster NGC6544
We report the detection of a new 3.06 ms binary pulsar in the globular
cluster NGC6544 using a Fourier-domain ``acceleration'' search. With an implied
companion mass of ~0.01 solar masses and an orbital period of only P_b~1.7
hours, it displays very similar orbital properties to many pulsars which are
eclipsed by their companion winds. The orbital period is the second shortest of
known binary pulsars after 47 Tuc R. The measured flux density of 1.3 +/- 0.4
mJy at 1332 MHz indicates that the pulsar is almost certainly the known
steep-spectrum point source near the core of NGC6544.Comment: Accepted by ApJ Letters on 11 October 2000, 5 page
The experience of family carers attending a joint reminiscence group with people with dementia: A thematic analysis
Reminiscence therapy has the potential to improve quality of life for people with dementia. In recent years reminiscence groups have extended to include family members, but carers' experience of attending joint sessions is undocumented. This qualitative study explored the experience of 18 family carers attending 'Remembering Yesterday Caring Today' groups. Semi-structured interviews were transcribed and subjected to thematic analysis. Five themes were identified: experiencing carer support; shared experience; expectations (met and unmet), carer perspectives of the person with dementia's experience; and learning and comparing. Family carers' experiences varied, with some experiencing the intervention as entirely positive whereas others had more mixed feelings. Negative aspects included the lack of respite from their relative, the lack of emphasis on their own needs, and experiencing additional stress and guilt through not being able to implement newly acquired skills. These findings may explain the failure of a recent trial of joint reminiscence groups to replicate previous findings of positive benefit. More targeted research within subgroups of carers is required to justify the continued use of joint reminiscence groups in dementia care
GBT Discovery of Two Binary Millisecond Pulsars in the Globular Cluster M30
We report the discovery of two binary millisecond pulsars in the
core-collapsed globular cluster M30 using the Green Bank Telescope (GBT) at 20
cm. PSR J2140-2310A (M30A) is an eclipsing 11-ms pulsar in a 4-hr circular
orbit and PSR J2140-23B (M30B) is a 13-ms pulsar in an as yet undetermined but
most likely highly eccentric (e>0.5) and relativistic orbit. Timing
observations of M30A with a 20-month baseline have provided precise
determinations of the pulsar's position (within 4" of the optical centroid of
the cluster), and spin and orbital parameters, which constrain the mass of the
companion star to be m_2 >~ 0.1Msun. The position of M30A is coincident with a
possible thermal X-ray point source found in archival Chandra data which is
most likely due to emission from hot polar caps on the neutron star. In
addition, there is a faint (V_555 ~ 23.8) star visible in archival HST F555W
data that may be the companion to the pulsar. Eclipses of the pulsed radio
emission from M30A by the ionized wind from the compact companion star show a
frequency dependent duration (\propto\nu^{-\alpha} with \alpha ~ 0.4-0.5) and
delay the pulse arrival times near eclipse ingress and egress by up to 2-3 ms.
Future observations of M30 may allow both the measurement of post-Keplerian
orbital parameters from M30B and the detection of new pulsars due to the
effects of strong diffractive scintillation.Comment: 10 pages, 6 figures, Submitted to ApJ. This version includes many
recommended modifications, an improved structure, a new author, and a
completely redone optical analysi
Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters
The initial energy transfer in photosynthesis occurs between the
light-harvesting pigments and on ultrafast timescales. We analyze the
carotenoid to bacteriochlorophyll energy transfer in LH2 Marichromatium
purpuratum as well as in an artificial light-harvesting dyad system by using
transient grating and two-dimensional electronic spectroscopy with 10 fs time
resolution. We find that F\"orster-type models reproduce the experimentally
observed 60 fs transfer times, but overestimate coupling constants, which leads
to a disagreement with both linear absorption and electronic 2D-spectra. We
show that a vibronic model, which treats carotenoid vibrations on both
electronic ground and excited state as part of the system's Hamiltonian,
reproduces all measured quantities. Importantly, the vibronic model presented
here can explain the fast energy transfer rates with only moderate coupling
constants, which are in agreement with structure based calculations.
Counterintuitively, the vibrational levels on the carotenoid electronic ground
state play a central role in the excited state population transfer to
bacteriochlorophyll as the resonance between the donor-acceptor energy gap and
vibrational ground state energies is the physical basis of the ultrafast energy
transfer rates in these systems
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