Guidelines for consideration of bats in lighting projects.

Eighty percent of the world’s population are currently exposed to light-polluted skies, and the Milky Way is no longer visible to more than a third of humanity. The pace the light pollution is increasing is faster than global population growth and economic development. While environmental conditions at night are being dramatically and rapidly altered, circadian rhythms, behaviour and ecology of plants and animals are imminently influenced. In the same time, effects of artificial lighting, various illumination schemes and spectra on biodiversity, including bats, are currently insufficiently understood, whereas only a vague notion of required mitigation and compensation activities exists among decision-makers and other parties involved in lighting projects. Although the bats are almost exclusively nocturnal and extremely sensitive to multiple effects of light pollution, its negative impact on bats alongside essential measures needed to preserve unfragmented nightscapes for these animals are often disregarded during impact assessments, planning and operation. In this volume, we tried to compile available evidence related to the effect of artificial light at night on the European bats. Based on the current state of knowledge, solutions are proposed concerning possible ways to avoid, mitigate and compensate the adverse effects which lighting projects may have on bats and their functional habitats. We also outlined research priorities for future studies, required for in-depth understanding of the problem and assessing efficiency of proposed mitigative measures

Managing hedgerows for nocturnal wildlife:Do bats and their insect prey benefit from targeted agri-environment schemes?

1. Mitigating the detrimental impacts of intensive farming on biodiversity requires the implementation of cost-effective conservation actions. Targeted agri-environment-schemes (AESs) to enhance populations of threatened species inhabiting farmland have been proposed for this purpose, yet their effectiveness for nocturnal wildlife remains unknown. 2. We assessed whether hedgerow management prescribed by targeted AESs to improve habitat conditions for the greater horseshoe bat (Rhinolophus ferrumequinum) in England may positively influence the species, the entire bat assemblage and the insect prey of bats. We specifically investigated the responses of bats (occurrence, activity, and species richness) and insects (biomass, abundance, and diversity) to time since last trimming (from 1 up to 10 years). We explored the mechanisms underlying the effects of AES via changes in trimming regime on bats. Moreover, we investigated the effects of landscape context on bats as we expected that highly mobile species would benefit further from landscape-scale management. 3. Bat species richness significantly increased with time since last trimming. Three bat taxa of major conservation concern in Western Europe substantially benefited from the targeted prescription, namely R. ferrumequinum, R. hipposideros and Plecotus spp. Insect-family richness and dipteran abundance were also significantly greater at hedgerows that were untrimmed for at least three years. The activity of more common bat species (i.e. pipistrelle bats) was not influenced by time since last trimming. 4. Changes in trimming regime strongly affected hedgerow height which directly and indirectly (by increasing prey abundance) influenced bat occurrence, activity and species richness along hedgerows. 5. The activity of highly mobile bat species was mainly associated with a range of landscape attributes. The amount of semi-natural grassland within 0.5 km of the sampling sites positively influenced R. ferrumequinum while the presence of urban areas negatively affected light-sensitive bat species. 6. Synthesis and applications. The implementation of targeted agri-environment-schemes can include effective measures to enhance bats and their insect prey in farmland. Although we highlight the success of current prescriptions on hedgerow management, we suggest that their effectiveness can easily be optimized by encouraging farmers to keep hedgerows untrimmed for longer periods (>3 up to 10 years). We also highlight that a multi-scale management approach is required to successfully promote bats in farmland

Overcoming establishment thresholds for peat mosses in human-made bog pools

Globally, peatlands have been affected by drainage and peat extraction, with adverse effects on their functioning and services. To restore peat‐forming vegetation, drained bogs are being rewetted on a large scale. Although this practice results in higher groundwater levels, unfortunately it often creates deep lakes in parts where peat was extracted to greater depths than the surroundings. Revegetation of these deeper waters by peat mosses appears to be challenging due to strong abiotic feedbacks that keep these systems in an undesired bare state. In this study, we theoretically explore if a floating peat mat and an open human‐made bog lake can be considered two alternative stable states using a simple model, and experimentally test in the field whether stable states are present, and whether a state shift can be accomplished using floating biodegradable structures that mimic buoyant peat. We transplanted two peat moss species into these structures (pioneer sp. Sphagnum cuspidatum and later‐successional sp. S. palustre) with and without additional organic substrate. Our model suggests that these open human‐made bog lakes and floating peat mats can indeed be regarded as alternative stable states. Natural recovery by spontaneous peat moss growth, i.e., a state shift from open water to floating mats, is only possible when the water table is sufficiently shallow to avoid light limitation (<0.29 m at our site). Our experiment revealed that alternative stable states are present and that the floating structures facilitated the growth of pioneer S. cuspidatum and vascular plants. Organic substrate addition particularly facilitated vascular plant growth, which correlated to higher moss height. The structures remained too wet for the late‐successional species S. palustre. We conclude that open water and floating peat mats in human‐made bog lakes can be considered two alternative stable states, and that temporary floating establishment structures can induce a state shift from the open water state to peat‐forming vegetation state. These findings imply that for successful restoration, there is a clear water depth threshold to enable peat moss growth and there is no need for addition of large amounts of donor‐peat substrate. Correct species selection for restoration is crucial for success

Stable Carbon and Nitrogen Isotopes in a Peat Profile Are Influenced by Early Stage Diagenesis and Changes in Atmospheric CO2 and N Deposition

In this study, we test whether the δ13C and δ15N in a peat profile are, respectively, linked to the recent dilution of atmospheric δ13CO2 caused by increased fossil fuel combustion and changes in atmospheric δ15N deposition. We analysed bulk peat and Sphagnum fuscum branch C and N concentrations and bulk peat, S. fuscum branch and Andromeda polifolia leaf δ13C and δ15N from a 30-cm hummock-like peat profile from an Aapa mire in northern Finland. Statistically significant correlations were found between the dilution of atmospheric δ13CO2 and bulk peat δ13C, as well as between historically increasing wet N deposition and bulk peat δ15N. However, these correlations may be affected by early stage kinetic fractionation during decomposition and possibly other processes. We conclude that bulk peat stable carbon and nitrogen isotope ratios may reflect the dilution of atmospheric δ13CO2 and the changes in δ15N deposition, but probably also reflect the effects of early stage kinetic fractionation during diagenesis. This needs to be taken into account when interpreting palaeodata. There is a need for further studies of δ15N profiles in sufficiently old dated cores from sites with different rates of decomposition: These would facilitate more reliable separation of depositional δ15N from patterns caused by other processes

Contribution of NFP LysM Domains to the Recognition of Nod Factors during the Medicago truncatula/Sinorhizobium meliloti Symbiosis

The root nodule nitrogen fixing symbiosis between legume plants and soil bacteria called rhizobia is of great agronomical and ecological interest since it provides the plant with fixed atmospheric nitrogen. The establishment of this symbiosis is mediated by the recognition by the host plant of lipo-chitooligosaccharides called Nod Factors (NFs), produced by the rhizobia. This recognition is highly specific, as precise NF structures are required depending on the host plant. Here, we study the importance of different LysM domains of a LysM-Receptor Like Kinase (LysM-RLK) from Medicago truncatula called Nod factor perception (NFP) in the recognition of different substitutions of NFs produced by its symbiont Sinorhizobium meliloti. These substitutions are a sulphate group at the reducing end, which is essential for host specificity, and a specific acyl chain at the non-reducing end, that is critical for the infection process. The NFP extracellular domain (ECD) contains 3 LysM domains that are predicted to bind NFs. By swapping the whole ECD or individual LysM domains of NFP for those of its orthologous gene from pea, SYM10 (a legume plant that interacts with another strain of rhizobium producing NFs with different substitutions), we showed that NFP is not directly responsible for specific recognition of the sulphate substitution of S. meliloti NFs, but probably interacts with the acyl substitution. Moreover, we have demonstrated the importance of the NFP LysM2 domain for rhizobial infection and we have pinpointed the importance of a single leucine residue of LysM2 in that step of the symbiosis. Together, our data put into new perspective the recognition of NFs in the different steps of symbiosis in M. truncatula, emphasising the probable existence of a missing component for early NF recognition and reinforcing the important role of NFP for NF recognition during rhizobial infection

Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus

Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to their asexual nature and absence of a single cell stage with only one nucleus. This has raised fundamental questions concerning speciation, selection and transmission of the genetic make-up to next generations. Although this concept has become textbook knowledge, it is only based on studying a few loci, including 45S rDNA. To provide a more comprehensive insight into the genetic makeup of arbuscular endomycorrhizal fungi, we applied de novo genome sequencing of individual nuclei of Rhizophagus irregularis. This revealed a surprisingly low level of polymorphism between nuclei. In contrast, within a nucleus, the 45S rDNA repeat unit turned out to be highly diverged. This finding demystifies a long-lasting hypothesis on the complex genetic makeup of arbuscular endomycorrhizal fungi. Subsequent genome assembly resulted in the first draft reference genome sequence of an arbuscular endomycorrhizal fungus. Its length is 141 Mbps, representing over 27,000 protein-coding gene models. We used the genomic sequence to reinvestigate the phylogenetic relationships of Rhizophagus irregularis with other fungal phyla. This unambiguously demonstrated that Glomeromycota are more closely related to Mucoromycotina than to its postulated sister Dikarya

The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project

Considerable progress has been made in ecological and evolutionary genetics with studies demonstrating how genes underlying plant and microbial traits can influence adaptation and even 'extend' to influence community structure and ecosystem level processes. Progress in this area is limited to model systems with deep genetic and genomic resources that often have negligible ecological impact or interest. Thus, important linkages between genetic adaptations and their consequences at organismal and ecological scales are often lacking. Here we introduce the Sphagnome Project, which incorporates genomics into a long-running history of Sphagnum research that has documented unparalleled contributions to peatland ecology, carbon sequestration, biogeochemistry, microbiome research, niche construction, and ecosystem engineering. The Sphagnome Project encompasses a genus-level sequencing effort that represents a new type of model system driven not only by genetic tractability, but by ecologically relevant questions and hypotheses

Litter quality and its response to water level drawdown in boreal peatlands at plant species and community level

Changes in the structure of plant communities may have much more impact on ecosystem carbon (C) cycling than any phenotypic responses to environmental changes. We studied these impacts via the response of plant litter quality, at the level of species and community, to persistent water-level (WL) drawdown in peatlands. We studied three sites with different nutrient regimes, and water-level manipulations at two time scales. The parameters used to characterize litter quality included extractable substances, cellulose, holocellulose, composition of hemicellulose (neutral sugars, uronic acids), Klason lignin, CuO oxidation phenolic products, and concentrations of C and several nutrients. The litters formed four chemically distinct groups: non-graminoid foliar litters, graminoids, mosses and woody litters. Direct effects of WL drawdown on litter quality at the species level were overruled by indirect effects via changes in litter type composition. The pristine conditions were characterized by Sphagnum moss and graminoid litters. Short-term (years) responses of the litter inputs to WL drawdown were small. In longterm (decades), total litter inputs increased, due to increased tree litter inputs. Simultaneously, the litter type composition and its chemical quality at the community level greatly changed. The changes that we documented will strongly affect soil properties and C cycle of peatlands.Peer reviewe