A stochastic movement simulator improves estimates of landscape connectivity

Acknowledgments This publication issued from the project TenLamas funded by the French Ministère de l'Energie, de l'Ecologie, du Développement Durable et de la Mer through the EU FP6 BiodivERsA Eranet; by the Agence Nationale de la Recherche (ANR) through the open call INDHET and 6th extinction MOBIGEN to V. M. Stevens, M. Baguette, and A. Coulon, and young researcher GEMS (ANR-13-JSV7-0010-01) to V. M. Stevens and M. Baguette; and by a VLIR-VLADOC scholarship awarded to J. Aben. L. Lens, J. Aben, D. Strubbe, and E. Matthysen are grateful to the Research Foundation Flanders (FWO) for financial support of fieldwork and genetic analysis (grant G.0308.13). V. M. Stevens and M. Baguette are members of the “Laboratoire d'Excellence” (LABEX) entitled TULIP (ANR-10-LABX-41). J. M. J. Travis and S. C. F. Palmer also acknowledge the support of NERC. A. Coulon and J. Aben contributed equally to the work.Peer reviewedPublisher PD

Alpha-decay Rates of Yb and Gd in Solar Neutrino Detectors

The $\alpha$-decay rates for the nuclides $^{168,170,171,172,173,174,176}$Yb and $^{148,150,152,154}$Gd have been estimated from transmission probabilities in a systematic $\alpha$-nucleus potential and from an improved fit to $\alpha$-decay rates in the rare-earth mass region. Whereas ${\alpha}$-decay of $^{152}$Gd in natural gadolinium is a severe obstacle for the use of gadolinium as a low-energy solar-neutrino detector, we show that ${\alpha}$-decay does not contribute significantly to the background in a ytterbium detector. An extremely long ${\alpha}$-decay lifetime of $^{168}$Yb is obtained from calculation, which may be close to the sensitivity limit in a low-background solar neutrino detector.Comment: 12 pages, 1 figure; An author name was correcte

Distribution and abundance of long-finned pilot whales in the North Atlantic, estimated from NASS-87 and NASS-89 data

During the summers of 1987 and 1989, large scale transect surveys were conducted throughout the North Atlantic by several national agencies in Denmark (off Greenland), Faroe Islands, Iceland, Norway and Spain (North Atlantic Sightings Surveys, NASS-87 and NASS-89). This paper analyses the pilot whale (Globicephala melas) survey data collected by three Icelandic and one Faroese survey vessel in 1987, and four Icelandic, one Faroese and one Spanish vessel in 1989. Norwegian survey vessels operated north and east of this area in both years, but only five groups (three primary sightings) were observed in 1989 and none in 1987. Furthermore, no sightings were made in the area north and northeast of Iceland, thus indicating that the joint surveys covered the northernmost areas of pilot whale distribution east of 42°W. The area further to the west was not covered in either survey. The coastal European waters between 42-52°N were covered by the Spanish vessel in 1989. Sightings made in 1989 by the Icelandic vessels tended to be at the southernmost boundaries of the survey area. The present data were examined with respect to several potential stratification factors, namely geographic block, Beaufort (i.e. wind speed), vessel and school size, but sample size precluded stratification by all these factors simultaneously. The encounter rate was generally lower in the 1987 survey than in 1989, but the difference was not statistically significant. The total estimate for the 1989 survey, covering a wider area and further to the south than in 1987, was 778,000 (CV=0.295). This is regarded as the best available estimate of the total stock of long-finned pilot whales in the northeastern North Atlantic Ocean, although small numbers occur outside the NASS survey areas. The paper discusses potential biases in the abundance estimates, and the problems of estimating pilot whale abundance from sightings data

Novel design of a soft lightweight pneumatic continuum robot arm with decoupled variable stiffness and positioning

Soft robot arms possess unique capabilities when it comes to adaptability, flexibility and dexterity. In addition, soft systems that are pneumatically actuated can claim high power to weight ratio. One of the main drawbacks of pneumatically actuated soft arms is that their stiffness cannot be varied independently from their end-effector position in space. The novel robot arm physical design presented in this paper successfully decouples its end-effector positioning from its stiffness. An experimental characterisation of this ability is coupled with a mathematical analysis. The arm combines the light weight, high payload to weight ratio and robustness of pneumatic actuation with the adaptability and versatility of variable stiffness. Light weight is a vital component of the inherent safety approach to physical human-robot interaction. In order to characterise the arm, a neural network analysis of the curvature of the arm for different input pressures is performed. The curvature-pressure relationship is also characterised experimentally

Sensitivities of Low Energy Reactor Neutrino Experiments

The low energy part of the reactor neutrino spectra has not been experimentally measured. Its uncertainties limit the sensitivities in certain reactor neutrino experiments. The origin of these uncertainties are discussed, and the effects on measurements of neutrino interactions with electrons and nuclei are studied. Comparisons are made with existing results. In particular, the discrepancies between previous measurements with Standard Model expectations can be explained by an under-estimation of the low energy reactor neutrino spectra. To optimize the experimental sensitivities, measurements for \nuebar-e cross-sections should focus on events with large ($>$1.5 MeV) recoil energy while those for neutrino magnetic moment searches should be based on events $<$100 keV. The merits and attainable accuracies for neutrino-electron scattering experiments using artificial neutrino sources are discussed.Comment: 25 pages, 9 figure

On dynamic network entropy in cancer

The cellular phenotype is described by a complex network of molecular interactions. Elucidating network properties that distinguish disease from the healthy cellular state is therefore of critical importance for gaining systems-level insights into disease mechanisms and ultimately for developing improved therapies. By integrating gene expression data with a protein interaction network to induce a stochastic dynamics on the network, we here demonstrate that cancer cells are characterised by an increase in the dynamic network entropy, compared to cells of normal physiology. Using a fundamental relation between the macroscopic resilience of a dynamical system and the uncertainty (entropy) in the underlying microscopic processes, we argue that cancer cells will be more robust to random gene perturbations. In addition, we formally demonstrate that gene expression differences between normal and cancer tissue are anticorrelated with local dynamic entropy changes, thus providing a systemic link between gene expression changes at the nodes and their local network dynamics. In particular, we also find that genes which drive cell-proliferation in cancer cells and which often encode oncogenes are associated with reductions in the dynamic network entropy. In summary, our results support the view that the observed increased robustness of cancer cells to perturbation and therapy may be due to an increase in the dynamic network entropy that allows cells to adapt to the new cellular stresses. Conversely, genes that exhibit local flux entropy decreases in cancer may render cancer cells more susceptible to targeted intervention and may therefore represent promising drug targets.Comment: 10 pages, 3 figures, 4 tables. Submitte

Final countdown for biodiversity hotspots

Most of Earth's biodiversity is found in 36 biodiversity hotspots, yet less than 10% natural intact vegetation remains. We calculated models projecting the future state of most of these hotspots for the year 2050, based on future climatic and agroeconomic pressure. Our models project an increasing demand for agricultural land resulting in the conversion of >50% of remaining natural intact vegetation in about one third of all hotspots, and in 2-6 hotspots resulting from climatic pressure. This confirms that, in the short term, habitat loss is of greater concern than climate change for hotspots and their biodiversity. Hotspots are most severely threatened in tropical Africa and parts of Asia, where demographic pressure and the demand for agricultural land is highest. The speed and magnitude of pristine habitat loss is, according to our models, much greater than previously shown when combining both scenarios on future climatic and agroeconomic pressure

Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant

The first centromeric protein identified in any species was CENP-A, a divergent member of the histone H3 family that was recognised by autoantibodies from patients with scleroderma-spectrum disease. It has recently been suggested to rename this protein CenH3. Here, we argue that the original name should be maintained both because it is the basis of a long established nomenclature for centromere proteins and because it avoids confusion due to the presence of canonical histone H3 at centromeres

Inflorescence lignification of natural species and horticultural hybrids of Phalaenopsis orchids

Phalaenopsis is an important ornamental pot plant for the global horticultural market. The inflorescences of Phalaenopsis horticultural hybrids require support from a stick during plant cultivation because of the weight of multiple large flowers. Developing a horticultural hybrid with a sufficiently lignified inflorescence stem that does not require additional support could be a way to reduce the costs of production. This study aimed to (i) determine the orientation and degree of lignification in the inflorescence stem of different species and horticultural hybrids of Phalaenopsis and investigate whether these lignification patterns follow any (ii) topological or (iii) phylogenetic pattern of interest to further explore in genetic precision breeding. Inflorescences of comparable devel- opmental stages of six species and 17 horticultural hybrids of flowering Phalaenopsis orchids were sampled. The orientation of the inflorescence varied from erect, sub-erect, arching, to pendant. The degree of lignification was measured with ImageJ using stained microscopic tissue sections and statistically analyzed. A molecular phylogeny of the species of Phalaenopsis was reconstructed based on plastid and nuclear ribosomal DNA sequences to analyze phylogenetic patterns. Our results show a significant difference in the degree of lignification between the different Phalaenopsis species and hybrids, between peduncle and rachis, and among the six different inflorescence positions analyzed. We found a positive correlation between inflorescence orientation and the proportion of lignified area per total stem area and the proportional thickness of the lignified fiber walls in the peduncle. We conclude that the degree of lignification is heritable, as we observed among our sample size a higher positive correlation between stem lignification variables among closely related taxa compared to more distantly related ones. However, a larger species sampling is needed to further validate our results. Plant sciencesNaturali