Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project.

Food allergies are believed to be on the rise and currently management relies on the avoidance of the food. Hen's egg allergy is after cow's milk allergy the most common food allergy; eggs are used in many food products and thus difficult to avoid. A technological process using a combination of enzymatic hydrolysis and heat treatment was designed to produce modified hen's egg with reduced allergenic potential. Biochemical (SDS-PAGE, Size exclusion chromatography and LC-MS/MS) and immunological (ELISA, immunoblot, RBL-assays, animal model) analysis showed a clear decrease in intact proteins as well as a strong decrease of allergenicity. In a clinical study, 22 of the 24 patients with a confirmed egg allergy who underwent a double blind food challenge with the hydrolysed egg remained completely free of symptoms. Hydrolysed egg products may be beneficial as low allergenic foods for egg allergic patients to extent their diet. This article is protected by copyright. All rights reserved

Data on the verification and validation of segmentation and registration methods for diffusion MRI.

The verification and validation of segmentation and registration methods is a necessary assessment in the development of new processing methods. However, verification and validation of diffusion MRI (dMRI) processing methods is challenging for the lack of gold-standard data. The data described here are related to the research article entitled "Surface-driven registration method for the structure-informed segmentation of diffusion MR images" [1], in which publicly available data are used to derive golden-standard reference-data to validate and evaluate segmentation and registration methods in dMRI

Combined Myocardial Motion Estimation and Segmentation Using Variational Techniques

Non

Real-Time Digital Timing in Positron Emission Tomography

Positron emission tomography (PET) requires accurate timing of scintillation events to properly discriminate between coincident and noncoincident pairs. The traditional solution to timing is based on custom application specific integrated circuits (ASIC) designs, whose cost may not be justified in the design of experimental small animal PET scanners. The new generation of PET scanners introduces the idea of continuous sampling of the detected scintillation pulse, replacing event-triggered acquisition front-ends. This approach enables new options to the timing procedure based on digital processing of the sampled pulse signal. This work proposes a time stamping algorithm based on the optically matched filter and compares the potential performance benefits of this approach versus other FIR-based timing algorithms, some of which have been already implemented by different authors. Results show that the coincidence timing resolution may be as low as 1.5 ns without the need of expensive high-speed converters when the proper signal processing is appliedIEEE Nuclear and Plasma Sciences SocietyPublicad

Multipurpose Monte Carlo simulator for photon transport in turbid media

Proceeding of: 2009 IEEE Nuclear Science Symposium Conference Record (NSS/MIC), Orlando, Florida, 25-31 October 2009Monte Carlo methods provide a flexible and rigorous solution to the problem of light transport in turbid media, which enable approaching complex geometries for a closed analytical solution is not feasible. The simulator implements local rules of propagation in the form of probability density functions that depend on the local optical properties of the tissue. This work presents a flexible simulator that can be applied in multiple applications related to optical tomography. In particular, unlike previous codes, the simulator explicitly supports fluorescent-tissues and variance reduction and code parallelization techniques are implemented in order to speed up the execution with fluorochrome-labelled agents. The simulator is validated with simple geometries for which an analytical solution exists, as well as with an experimental polyester resin based optical phantom.This work was supported in part by the Ministry of Science and Innovation under projects TEC2008-06715 and TEC2007-64731/TCM and by the EU’s 7th Frame Programme under contract HEALTH-F5-2008-20179

Spatio-Temporal Nonrigid Registration for Ultrasound Cardiac Motion Estimation

We propose a new spatio-temporal elastic registration algorithm for motion reconstruction from a series of images. The specific application is to estimate displacement fields from two-dimensional ultrasound sequences of the heart. The basic idea is to find a spatio-temporal deformation field that effectively compensates for the motion by minimizing a difference with respect to a reference frame. The key feature of our method is the use of a semi-local spatio-temporal parametric model for the deformation using splines, and the reformulation of the registration task as a global optimization problem. The scale of the spline model controls the smoothness of the displacement field. Our algorithm uses a multiresolution optimization strategy to obtain a higher speed and robustness. We evaluated the accuracy of our algorithm using a synthetic sequence generated with an ultrasound simulation package, together with a realistic cardiac motion model. We compared our new global multiframe approach with a previous method based on pairwise registration of consecutive frames to demonstrate the benefits of introducing temporal consistency. Finally, we applied the algorithm to the regional analysis of the left ventricle. Displacement and strain parameters were evaluated showing significant differences between the normal and pathological segments, thereby illustrating the clinical applicability of our method

Algoritmo Level-set para segmentación hepática en TAC con Restricciones de curvatura local

Actas de: XXIX Congreso Anual de la Sociedad Espñaola de Ingeniería Biomédica (CASEIB 2011). Cáceres, 16-18 Noviembre 2011.La cirugía hepática avanzada requiere de una precisa planificación pre-operatoria en la que tanto la segmentación anatómica como la estimación del volumen hepático remanente tienen una importancia clave a la hora de evitar un fallo hepático postoperatorio. En este contexto, algoritmos basados en level-sets han logrado mejores resultados que otros, especialmente cuando se tratan casos con un parénquima hepático alterado o en hígados previamente resecados. Con el objetivo de mejorar las medidas de volumen hepático funcional, se proponen dos estrategias para completar y realzar algoritmos previos basados en level-sets: una estrategia optimizada multi-resolución con curvatura adaptativa y corrección/refinamiento de detalles, junto con un paso semiautomático adicional en el que se imponen restricciones de curvatura local. Los resultados muestran segmentaciones robustas y precisas, especialmente en estructuras alargadas, detectando lesiones internas y evitando fugas o escapes a estructuras proximales.Este trabajo está parcialmente apoyado por los proyectos de investigación PI09/91058, PI09/91065, ENTEPRASE PS-300000-2009-5, AMIT-CDTI, TEC2010-21619-C04 and PRECISION IPT-300000-2010-3, del Ministerio de Ciencia e Innovación de España, el proyecto ARTEMIS de la Comunidad de Madrid y la ayuda de los fondos FEDER de la Unión Europea.Publicad

Intrapericardial cardiosphere-derived cells hinder epicardial dense scar expansion and promote electrical homogeneity in a porcine post-infarction model

The arrhythmic substrate of ventricular tachycardias in many structural heart diseases is located in the epicardium, often resulting in poor outcomes with currently available therapies. Cardiosphere-derived cells (CDCs) have been shown to modify myocardial scarring. A total of 19 Large White pigs were infarcted by occlusion of the mid-left anterior descending coronary artery for 150 min. Baseline cardiac magnetic resonance (CMR) imaging with late gadolinium enhancement sequences was obtained 4 weeks post-infarction and pigs were randomized to a treatment group (intrapericardial administration of 300,000 allogeneic CDCs/kg), (n = 10) and to a control group (n = 9). A second CMR and high-density endocardial electroanatomical mapping were performed at 16 weeks post-infarction. After the electrophysiological study, pigs were sacrificed and epicardial optical mapping and histological studies of the heterogeneous tissue of the endocardial and epicardial scars were performed. In comparison with control conditions, intrapericardial CDCs reduced the growth of epicardial dense scar and epicardial electrical heterogeneity. The relative differences in conduction velocity and action potential duration between healthy myocardium and heterogeneous tissue were significantly smaller in the CDC-treated group than in the control group. The lower electrical heterogeneity coincides with heterogeneous tissue with less fibrosis, better cardiomyocyte viability, and a greater quantity and better polarity of connexin 43. At the endocardial level, no differences were detected between groups. Intrapericardial CDCs produce anatomical and functional changes in the epicardial arrhythmic substrate, which could have an anti-arrhythmic effect.This study was supported by the Instituto de Salud Carlos III, Madrid, Spain (PI18/01895 and DTS21/00064); Red de Terapia Celular from the Instituto de Salud Carlos III, Madrid, Spain (RD16/0011/0029); Ricors-Red de Investigación Cooperativa Orientada a Resultados en Salud-RICORS TERAV (RD21.0017.0002), European Union's H2020 Program under grant agreement No. 874827 (BRAVE), and the Sociedad Española de Cardiología, Madrid, Spain

Optimization of Monte Carlo code for clinical simulation of electron beams

The aim of this work is to optimize a Monte Carlo (MC) kernel for electron radiation therapy (IOERT) compatible with intraoperative usage and to integrate it within an existing IOERT dedicated treatment planning system (TPS