semi multiplex pcr technique for screening of abundant transcripts during systematic sequencing of cdna libraries

The systematic sequencing of cDNA libraries is an efficient approach for the identification of new genes, but the presence of abundant mRNAs is often a major problem. This paper describes a very si..

Manganese in dwarf spheroidal galaxies

We provide manganese abundances (corrected for the effect of the hyperfine structure) for a large number of stars in the dwarf spheroidal galaxies Sculptor and Fornax, and for a smaller number in the Carina and Sextans dSph galaxies. Abundances had already been determined for a number of other elements in these galaxies, including alpha and iron-peak ones, which allowed us to build [Mn/Fe] and [Mn/alpha] versus [Fe/H] diagrams. The Mn abundances imply sub-solar [Mn/Fe] ratios for the stars in all four galaxies examined. In Sculptor, [Mn/Fe] stays roughly constant between [Fe/H]\sim -1.8 and -1.4 and decreases at higher iron abundance. In Fornax, [Mn/Fe] does not vary in any significant way with [Fe/H]. The relation between [Mn/alpha] and [Fe/H] for the dSph galaxies is clearly systematically offset from that for the Milky Way, which reflects the different star formation histories of the respective galaxies. The [Mn/alpha] behavior can be interpreted as a result of the metal-dependent Mn yields of type II and type Ia supernovae. We also computed chemical evolution models for star formation histories matching those determined empirically for Sculptor, Fornax, and Carina, and for the Mn yields of SNe Ia, which were assumed to be either constant or variable with metallicity. The observed [Mn/Fe] versus [Fe/H] relation in Sculptor, Fornax, and Carina can be reproduced only by the chemical evolution models that include a metallicity-dependent Mn yield from the SNe Ia.Comment: 19 pages, 10 figures, accepted for publication in Astronomy & Astrophysic

Measurement of the front-end dead-time of the LHCb muon detector and evaluation of its contribution to the muon detection inefficiency

A method is described which allows to deduce the dead-time of the front-end electronics of the LHCb muon detector from a series of measurements performed at different luminosities at a bunch-crossing rate of 20 MHz. The measured values of the dead-time range from 70 ns to 100 ns. These results allow to estimate the performance of the muon detector at the future bunch-crossing rate of 40 MHz and at higher luminosity

Performance of the Muon Identification at LHCb

The performance of the muon identification in LHCb is extracted from data using muons and hadrons produced in J/\psi->\mu\mu, \Lambda->p\pi and D^{\star}->\pi D0(K\pi) decays. The muon identification procedure is based on the pattern of hits in the muon chambers. A momentum dependent binary requirement is used to reduce the probability of hadrons to be misidentified as muons to the level of 1%, keeping the muon efficiency in the range of 95-98%. As further refinement, a likelihood is built for the muon and non-muon hypotheses. Adding a requirement on this likelihood that provides a total muon efficiency at the level of 93%, the hadron misidentification rates are below 0.6%.Comment: 17 pages, 10 figure

In Silico Mining for Antimalarial Structure-Activity Knowledge and Discovery of Novel Antimalarial Curcuminoids.

Malaria is a parasitic tropical disease that kills around 600,000 patients every year. The emergence of resistant Plasmodium falciparum parasites to artemisinin-based combination therapies (ACTs) represents a significant public health threat, indicating the urgent need for new effective compounds to reverse ACT resistance and cure the disease. For this, extensive curation and homogenization of experimental anti-Plasmodium screening data from both in-house and ChEMBL sources were conducted. As a result, a coherent strategy was established that allowed compiling coherent training sets that associate compound structures to the respective antimalarial activity measurements. Seventeen of these training sets led to the successful generation of classification models discriminating whether a compound has a significant probability to be active under the specific conditions of the antimalarial test associated with each set. These models were used in consensus prediction of the most likely active from a series of curcuminoids available in-house. Positive predictions together with a few predicted as inactive were then submitted to experimental in vitro antimalarial testing. A large majority from predicted compounds showed antimalarial activity, but not those predicted as inactive, thus experimentally validating the in silico screening approach. The herein proposed consensus machine learning approach showed its potential to reduce the cost and duration of antimalarial drug discovery

Measurement of the KL meson lifetime with the KLOE detector

We present a measurement of the KL lifetime using the KLOE detector. From a sample of 4 x 10^8 KS KL pairs following the reaction e+ e- -> phi -> KS KL we select 15 x 10^6 KL -> p0 p0 p0 decays tagged by KS -> pi+ pi- events. From a fit of the proper time distribution we find tau_L = (50.92 +- 0.17{stat} +- 0.25{syst})$ ns. This is the most precise measurement of the KL lifetime performed to date.Comment: 14 pages, 14 figure

Performance of the LHCb muon system with cosmic rays

The LHCb Muon system performance is presented using cosmic ray events collected in 2009. These events allowed to test and optimize the detector configuration before the LHC start. The space and time alignment and the measurement of chamber efficiency, time resolution and cluster size are described in detail. The results are in agreement with the expected detector performance.Comment: Submitted to JINST and accepte

Cardiac overexpression of melusin protects from dilated cardiomyopathy due to long-standing pressure overload.

We have previously shown that genetic ablation of melusin, a muscle specific beta 1 integrin interacting protein, accelerates left ventricle (LV) dilation and heart failure in response to pressure overload. Here we show that melusin expression was increased during compensated cardiac hypertrophy in mice subjected to 1 week pressure overload, but returned to basal levels in LV that have undergone dilation after 12 weeks of pressure overload. To better understand the role of melusin in cardiac remodeling, we overexpressed melusin in heart of transgenic mice. Echocardiography analysis indicated that melusin over-expression induced a mild cardiac hypertrophy in basal conditions (30% increase in interventricular septum thickness) with no obvious structural and functional alterations. After prolonged pressure overload (12 weeks), melusin overexpressing hearts underwent further hypertrophy retaining concentric LV remodeling and full contractile function, whereas wild-type LV showed pronounced chamber dilation with an impaired contractility. Analysis of signaling pathways indicated that melusin overexpression induced increased basal phosphorylation of GSK3beta and ERK1/2. Moreover, AKT, GSK3beta and ERK1/2 were hyper-phosphorylated on pressure overload in melusin overexpressing compared with wild-type mice. In addition, after 12 weeks of pressure overload LV of melusin overexpressing mice showed a very low level of cardiomyocyte apoptosis and stromal tissue deposition, as well as increased capillary density compared with wild-type. These results demonstrate that melusin overexpression allows prolonged concentric compensatory hypertrophy and protects against the transition toward cardiac dilation and failure in response to long-standing pressure overload

Performance of the LHCb muon system

The performance of the LHCb Muon system and its stability across the full 2010 data taking with LHC running at ps = 7 TeV energy is studied. The optimization of the detector setting and the time calibration performed with the first collisions delivered by LHC is described. Particle rates, measured for the wide range of luminosities and beam operation conditions experienced during the run, are compared with the values expected from simulation. The space and time alignment of the detectors, chamber efficiency, time resolution and cluster size are evaluated. The detector performance is found to be as expected from specifications or better. Notably the overall efficiency is well above the design requirementsComment: JINST_015P_1112 201