Large impacts of small methane fluxes on carbon isotope values of soil respiration

Carbon dioxide isotope (δ13C of CO2) analysis is increasingly used to address a broad range of questions involving soil C dynamics and respiration sources. However, attaining δ13C mass balance is critical for robust interpretation. Many ecosystems exhibit methane (CH4) fluxes that are small in the context of total C budgets, yet may significantly impact δ13C values of CO2 due to large kinetic fractionations during CH4 production. Thus, the δ13C values of CO2 do not directly reflect respiration C sources when co-occurring with CH4, but few studies of terrestrial soils have considered this phenomenon. To assess how CH4 altered the interpretation of δ13C values of CO2, we incubated a Mollisol and Oxisol amended with C4-derived plant litter for 90 days under two headspace treatments: a fluctuating anaerobic/aerobic treatment (four days of anaerobic conditions alternating with four days of aerobic conditions), and a static aerobic treatment (control). We measured δ13C values of CO2 and CH4 with a tunable diode laser absorption spectrometer, using a novel in-line combustion method for CH4. Cumulative δ13C of CO2 differed significantly between treatments in both soils. The δ13C values of CO2 were affected by relatively small CH4 fluxes in the fluctuating anaerobic/aerobic treatment. Effects of CH4 on δ13C values of CO2 were greater in the Oxisol due to its higher percent contribution of CH4 to total C mineralization(18%) than in the Mollisol (3%) during periods of elevated CH4 production. When CH4accounted for just 2% of total C mineralization, the δ13C values of CO2 differed from total C mineralization by 0.3–1‰, and by 1.4–4.8‰ when CH4 was 10% of C mineralization. These differences are highly significant when interpreting natural abundance δ13C data. Small CH4fluxes may strongly alter the δ13C values of CO2 relative to total mineralized C. A broad range of mineral and peatland soils can experience temporary oxygen deficits. In these dynamic redox environments, the δ13C values of CO2 should be interpreted with caution and ideally combined with δ13C of CH4 when partitioning sources and mechanisms of soil respiration

Measurement of J/Psi and Psi(2S) Polarization in ppbar Collisions at sqrt(s) = 1.8 TeV

We have measured the polarization of J/Psi and Psi(2S) mesons produced in p\bar{p} collisions at \sqrt{s} = 1.8 TeV, using data collected at CDF during 1992-95. The polarization of promptly produced J/Psi [Psi(2S)] mesons is isolated from those produced in B-hadron decay, and measured over the kinematic range 4[5.5] < P_T < 20 GeV/c and |y| < 0.6. For P_T \gessim 12 GeV/c we do not observe significant polarization in the prompt component.Comment: Revised version, accepted for publication in Physical Review Letter

LD-CNV: rapid and simple discovery of chromosomal translocations using linkage disequilibrium between copy number variable loci.

Large-scale structural variations, such as chromosomal translocations, can have profound effects on fitness and phenotype, but are difficult to identify and characterize. Here, we describe a simple and effective method aimed at identifying translocations using only the dosage of sequence reads mapped on the reference genome. We binned reads on genomic segments sized according to sequencing coverage and identified instances when copy number segregated in populations. For each dosage-polymorphic 1 Mb bin, we tested independence, effectively an apparent linkage disequilibrium (LD), with other variable bins. In nine potato (Solanum tuberosum) dihaploid families translocations affecting pericentromeric regions were common and in two cases were due to genomic misassembly. In two populations, we found evidence for translocation affecting euchromatic arms. In cv. PI 310467, a nonreciprocal translocation between chromosomes (chr.) 7 and 8 resulted in a 5-3 copy number change affecting several Mb at the respective chromosome tips. In cv. "Alca Tarma," the terminal arm of chr. 4 translocated to the tip of chr. 1. Using oligonucleotide-based fluorescent in situ hybridization painting probes (oligo-FISH), we tested and confirmed the predicted arrangement in PI 310467. In 192 natural accessions of Arabidopsis thaliana, dosage haplotypes tended to vary continuously and resulted in higher noise, while apparent LD between pericentromeric regions suggested the effect of repeats. This method, LD-CNV, should be useful in species where translocations are suspected because it tests linkage without the need for genotyping

Genomic Outcomes of Haploid Induction Crosses in Potato (Solanum tuberosum L.)

The challenges of breeding autotetraploid potato (Solanum tuberosum) have motivated the development of alternative breeding strategies. A common approach is to obtain uniparental dihaploids from a tetraploid of interest through pollination with S. tuberosum Andigenum Group (formerly S. phureja) cultivars. The mechanism underlying haploid formation of these crosses is unclear, and questions regarding the frequency of paternal DNA transmission remain. Previous reports have described aneuploid and euploid progeny that, in some cases, displayed genetic markers from the haploid inducer (HI). Here, we surveyed a population of 167 presumed dihaploids for large-scale structural variation that would underlie chromosomal addition from the HI, and for small-scale introgression of genetic markers. In 19 progeny, we detected 10 of the 12 possible trisomies and, in all cases, demonstrated the noninducer parent origin of the additional chromosome. Deep sequencing indicated that occasional, short-tract signals appearing to be of HI origin were better explained as technical artifacts. Leveraging recurring copy number variation patterns, we documented subchromosomal dosage variation indicating segregation of polymorphic maternal haplotypes. Collectively, 52% of the assayed chromosomal loci were classified as dosage variable. Our findings help elucidate the genomic consequences of potato haploid induction and suggest that most potato dihaploids will be free of residual pollinator DNA

J/ψ production via χc decays in 920 GeV pA interactions [J-\psi Production via \chi_c Decays in 920 GeV pA Interactions]

Using data collected by the HERA-B experiment, we have measured the fraction of J/ψ's produced via radiative χc decays in interactions of 920 GeV protons with carbon and titanium targets. We obtained Rχc= 0.32±0.06_stat±0.04_sys for the fraction of J/ψ from χc decays averaged over proton–carbon and proton–titanium collisions. This result is in agreement with previous measurements and is compared with theoretical predictions