Changing Microarthropod Communities in Front of a Receding Glacier in the High Arctic

This study was carried out at Ny-Ålesund on Spitsbergen in Svalbard (High Arctic). Eight study sites were established along a transect from the fjord to the snout of the glacier. The sites di ered from each other by the type of vegetation cover and soil characteristics. Soil samples were collected and placed in Tullgren funnels. Extracted arthropods were represented by two groups of mites (Mesostigmata and Oribatida) and springtails (Collembola). The pioneer species that occurred first after retreat of the glacier were representatives of the Collembola (Agrenia bidenticulata and Hypogastrura concolor). Later, other springtails appeared including Folsomia alpha, Folsomia quadrioculata, Hypogastrura concolor, Isotoma anglicana, Sminthurinus concolor and the first species of oribatid mites; Camisia foveolata and Tectocepheus velatus velatus. Arthropod communities recorded along the transect were characterized by large variations in both species composition and abundance of individuals. The greater the distance from the glacier snout, the greater the species richness (2 to 22 species). The mean number of species per sample was the lowest at site 8 (1 0.71) (the closest to the glacier) and greatest at site 1 (14 1.41) (furthest from the glacier). The Simpson’s diversity index (D) was distinctly greater at sites 1 (4.61 0.06) and 3 (3.94 0.11) than at other sites, especially site 8 (1.07 0.06). Densities were least in the samples closest to the glacier (30 to 101 individuals; density 3000–10,100 individuals/m2). At the other locations, abundance was highly variable (905 to 7432 individuals; density 90,500–743,200 individuals/m2). The mean abundances were greatest at sites 2 and 3. The great variations in total abundances observed were often due to the presence or absence of one or more dominant species exhibiting extreme abundance variability between sites. The microarthropod community of the High Arctic is composed of heterogeneous circumpolar species, yet on a landscape scale is extremely dependent on local environmental conditions which may be subject to rapid change

Mite communities (Acari: Mesostigmata, Oribatida) in the red belt conk, Fomitopsis pinicola (Polyporales), in Polish forests

The fruiting bodies of bracket fungi are a specific microhabitat colonized by various invertebrates of which mites (Acari) are rarely studied, and if they are, the study is usually faunistic. The aim of the research was to determine whether the diversification of mite assemblages (Mesostigmata, Oribatida) inhabiting the fruiting bodies of Fomitopsis pinicola (Sw.) P. Karst. (Polyporales) are connected with the character of the forests and/or the degree of decay (DD) of the fruiting bodies. The research was conducted at Białowieża National Park (BNP), in forests close to natural ones and in Karkonosze National Park (KNP) which was affected by a large-scale forest dieback in the 1980s. Eighty fruiting bodies (40 at each study site) of F. pinicola belonging to four DD categories were collected. In total, 4,345 individuals of 120 mite species were recorded at BNP, and 13,912 individuals of 96 species were recorded at KNP. Analyses revealed that the sample dispersion at each study site was comparable, nevertheless the samples from each study site were clearly grouped into slightly overlapping sets which allow observation of the differences between them. In the less decayed fungi (DD 1 and 2) there were fewer mite species and individual mites than in the more decayed samples (DD 3 and 4). There were also significant differences between the fauna of the fungi in each particular DD: the fauna of DD 1 differed from all others, whereas the fauna of heavily decayed fungi (DD 3 and 4) was more comparable

The role of bracket fungi in creating alpha diversity of invertebrates in the Białowieża National Park, Poland

Bracket fungi are seen mainly as the cause of economic losses in forestry, and their role as creators of biodiversity is relatively poorly understood. The aim of the study was defining the manner in which the degree of decay (DD) of the fruiting bodies determines the character of the invertebrate assemblages colonising them. The effect of this group of fungi on the modification of biodiversity of invertebrates (Aranae, Opiliones, Pseudoscorpionida, two groups of mites- Mesostigmata and Oribatida, and Collembola and Insecta) was investigated by analyzing 100 fruiting bodies of 10 species of bracket fungi divided into four DD classes. The material was collected at Białowieża National Park, which is considered to be the largest area of natural forests in the North European Plain. 16 068 invertebrate individuals classified into 224 species were obtained. Oribatid mites (12 543 individuals) constituted the largest group of individuals, which were classified into 115 species with the most numerous Carabodes femoralis (8,811 individuals). Representatives of this group of mites have been reported previously in the publications on bracket fungi; however, the contributions of Oribatida and other groups of invertebrates were not broadly compared. Moreover, the species such as Hoploseius mariae and H. oblongus, which were predominantly found in fruiting bodies of bracket fungi, have also been discerned. The invertebrate fauna differs depending on DD of the samples: In the more decayed samples, a higher number of both individuals and species were recorded compared to the samples with lower DDs; however, this trend proved to be nonlinear. The DCA and cluster analysis revealed a similarity of the invertebrate assemblages from the 2 DD and 4 DD samples. They also indicated that the group 3 DD differed the most from all the other samples. The indicator species analysis identified species characteristic to individual DDs: For group 1 DD, it was, for example, Hoploseius oblongus; for 2 DD - Orchesella bifasciata; and for 3 DD-Chernes cimicoides, while for 4 DD-Dinychus perforatus

the role of soluble and insoluble fibers during fermentation of Chicory root pulp

This thesis was aimed at understanding the in vitro fermentability of soluble and insoluble fibers in chicory root pulp (CRP). First, CRP and ensiled chicory root pulp (ECRP) were characterized for cell wall polysaccharides (CWPs). Both CRP and ECRP were rich in CWPs (56-58 w/w (%)) and had rather similar sugar compositions. The CWPs consist of 62 % pectin, 11% hemicellulose and 27% cellulose. Pectin and xyloglucan were acetylated and the rhamnogalacturonan-I segments of pectin were branched mostly with arabinan. Compared to CRP, ECRP has four times more soluble pectin. In vitrofermentability in a batch model for 24 h using human faecal inoculum, showed that fibers in both CRP (51% carbohydrate utilisation) and ECRP (59% carbohydrate utilisation) were fermentable, especially pectin (80-87%). The increased levels of soluble pectin (arabinan, homogalacturonan and galactan) and the hypothesized open cell wall structure in ECRP contributed to a quicker fermentation and a higher level of carbohydrate utilization compared to CRP. In contrast to batch fermentation, fermentation in the dynamic TNO In vitro model of the colon (TIM-2) was rapid (57% carbohydrate utilisation in 2 h). ECRP carbohydrates (85%) were less fermented in 24 h compared to CRP carbohydrates (92%) due to lower utilisation of ECRP insoluble fibers than CRP insoluble fibers. It was hypothesized that soluble fibers that are readily fermentable and dominantly present in ECRP, programmed the microbiota in TIM-2 to fully adapt to these soluble fibers. After their utilization, the microbiota was not able to adapt towards the fermentation of insoluble fibers. Analysis of enzyme activities during batch fermentation of CRP showed increased levels of arabinofuranosidase, β-galactosidase, endo-arabinanase, endo-galactanase, exo-polygalacturonase, pectin de-esterifying enzymes and endo-polygalacturonase. They synergistically contributed to degrading pectin in CRP from 12 to 24 h of fermentation.</p

A Novel Pzg-NURF Complex Regulates Notch Target Gene Activity

The Putzig (Pzg) protein is associated with the NURF nucleosome remodeling complex, thereby promoting Notch target gene expression. Our findings suggest a novel Pzg-NURF complex that is responsible for the epigenetic regulation of Notch target genes

Chromatin domain boundary element search tool for Drosophila

Chromatin domain boundary elements prevent inappropriate interaction between distant or closely spaced regulatory elements and restrict enhancers and silencers to correct target promoters. In spite of having such a general role and expected frequent occurrence genome wide, there is no DNA sequence analysis based tool to identify boundary elements. Here, we report chromatin domain Boundary Element Search Tool (cdBEST), to identify boundary elements. cdBEST uses known recognition sequences of boundary interacting proteins and looks for ‘motif clusters’. Using cdBEST, we identified boundary sequences across 12 Drosophila species. Of the 4576 boundary sequences identified in Drosophila melanogaster genome, >170 sequences are repetitive in nature and have sequence homology to transposable elements. Analysis of such sequences across 12 Drosophila genomes showed that the occurrence of repetitive sequences in the context of boundaries is a common feature of drosophilids. We use a variety of genome organization criteria and also experimental test on a subset of the cdBEST boundaries in an enhancer-blocking assay and show that 80% of them indeed function as boundaries in vivo. These observations highlight the role of cdBEST in better understanding of chromatin domain boundaries in Drosophila and setting the stage for comparative analysis of boundaries across closely related species

The Moral Boundary Drawing of Class: Social Inequality and Young Precarious Workers in Poland and Germany

This article explores the relational and moral aspects of the perception of class structure and class identifications by young people in objectively vulnerable labour market conditions in Poland and Germany. Drawing on 123 biographical interviews with young people in both countries, it demonstrates that young precarious Poles and Germans tend to identify themselves against the ‘middle class’ – understood variously in the two countries – and attribute the sources of economic wealth and social status in their societies to individual merits and entrepreneurship. Positioning oneself in the broad middle and limited identification with the precariat is explained by the youth transition phase, country-specific devaluation of class discourses and the effects of individualisation

Plant expression, lyophilisation and storage of HBV medium and large surface antigens for a prototype oral vaccine formulation

Current immunisation programmes against hepatitis B virus (HBV) increasingly often involve novel tri-component vaccines containing—together with the small (S-HBsAg)—also medium and large surface antigens of HBV (M- and L-HBsAg). Plants producing all HBsAg proteins can be a source of components for a potential oral ‘triple’ anti-HBV vaccine. The objective of the presented research was to study the potential of M/L-HBsAg expression in leaf tissue and conditions of its processing for a prototype oral vaccine. Tobacco and lettuce carrying M- or L-HBsAg genes and resistant to the herbicide glufosinate were engineered and integration of the transgenes was verified by PCR and Southern hybridizations. M- and L-HBsAg expression was confirmed by Western blot and assayed by ELISA at the level of micrograms per g of fresh weight. The antigens displayed a common S domain and characteristic domains preS2 and preS1 and were assembled into virus-like particles (VLPs). Leaf tissues containing M- and L-HBsAg were lyophilised to produce a starting material of an orally administered vaccine formula. The antigens were distinctly sensitive to freeze-drying conditions and storage temperature, in the aspect of stability of S and preS domains and formation of multimeric particles. Efficiency of lyophilisation and storage depended also on the initial antigen content in plant tissue, yet M-HBsAg appeared to be approximately 1.5–2 times more stable than L-HBsAg. The results of the study provide indications concerning the preparation of two other constituents, next to S-HBsAg, for a plant-derived prototype oral tri-component vaccine against hepatitis B

Mosquitoes LTR Retrotransposons: A Deeper View into the Genomic Sequence of Culex quinquefasciatus

A set of 67 novel LTR-retrotransposon has been identified by in silico analyses of the Culex quinquefasciatus genome using the LTR_STRUC program. The phylogenetic analysis shows that 29 novel and putatively functional LTR-retrotransposons detected belong to the Ty3/gypsy group. Our results demonstrate that, by considering only families containing potentially autonomous LTR-retrotransposons, they account for about 1% of the genome of C. quinquefasciatus. In previous studies it has been estimated that 29% of the genome of C. quinquefasciatus is occupied by mobile genetic elements