97 research outputs found

    Evaluating pathway enumeration algorithms in metabolic engineering case studies

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    The design of cell factories for the production of compounds involves the search for suitable heterologous pathways. Different strategies have been proposed to infer such pathways, but most are optimization approaches with specific objective functions, not suited to enumerate multiple pathways. In this work, we analyze two pathway enumeration algorithms based on graph representations: the Solution Structure Generation and the Find Path algorithms. Both are capable of enumerating exhaustively multiple pathways using network topology. We study their capabilities and limitations when designing novel heterologous pathways, by applying these methods on two case studies of synthetic metabolic engineering related to the production of butanol and vanillin

    Multiplicity correlations of intermediate-mass fragments with pions and fast protons in 12C + 197Au

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    Low-energy pi+ (E < 35 MeV) from 12C+197Au collisions at incident energies from 300 to 1800 MeV per nucleon were detected with the Si-Si(Li)-CsI(Tl) calibration telescopes of the INDRA multidetector. The inclusive angular distributions are approximately isotropic, consistent with multiple rescattering in the target spectator. The multiplicity correlations of the low-energy pions and of energetic protons (E > 150 MeV) with intermediate-mass fragments were determined from the measured coincidence data. The deduced correlation functions 1 + R \approx 1.3 for inclusive event samples reflect the strong correlations evident from the common impact-parameter dependence of the considered multiplicities. For narrow impact-parameter bins (based on charged-particle multiplicity), the correlation functions are close to unity and do not indicate strong additional correlations. Only for pions at high particle multiplicities (central collisions) a weak anticorrelation is observed, probably due to a limited competition between these emissions. Overall, the results are consistent with the equilibrium assumption made in statistical multifragmentation scenarios. Predictions obtained with intranuclear cascade models coupled to the Statistical Multifragmentation Model are in good agreement with the experimental data.Comment: 9 pages, 11 figures, subm. to EPJ

    Fragmentation in Peripheral Heavy-Ion Collisions: from Neck Emission to Spectator Decays

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    Invariant cross sections of intermediate mass fragments in peripheral collisions of Au on Au at incident energies between 40 and 150 AMeV have been measured with the 4-pi multi-detector INDRA. The maximum of the fragment production is located near mid-rapidity at the lower energies and moves gradually towards the projectile and target rapidities as the energy is increased. Schematic calculations within an extended Goldhaber model suggest that the observed cross-section distributions and their evolution with energy are predominantly the result of the clustering requirement for the emerging fragments and of their Coulomb repulsion from the projectile and target residues. The quantitative comparison with transverse energy spectra and fragment charge distributions emphasizes the role of hard scattered nucleons in the fragmentation process.Comment: 5 pages, 5 eps figures, RevTeX4, submitted to Phys. Lett.

    Statistical Multifragmentation of Non-Spherical Expanding Sources in Central Heavy-Ion Collisions

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    We study the anisotropy effects measured with INDRA at GSI in central collisions of Xe+Sn at 50 A.MeV and Au+Au at 60, 80, 100 A.MeV incident energy. The microcanonical multifragmentation model with non-spherical sources is used to simulate an incomplete shape relaxation of the multifragmenting system. This model is employed to interpret observed anisotropic distributions in the fragment size and mean kinetic energy. The data can be well reproduced if an expanding prolate source aligned along the beam direction is assumed. An either non-Hubblean or non-isotropic radial expansion is required to describe the fragment kinetic energies and their anisotropy. The qualitative similarity of the results for the studied reactions suggests that the concept of a longitudinally elongated freeze-out configuration is generally applicable for central collisions of heavy systems. The deformation decreases slightly with increasing beam energy.Comment: 35 pages, 19 figures, submitted to Nuclear Physics

    Mass measurement and isoscaling in 124^{124}Sn+Sn and 107^{107}Sn+Sn reactions at 600 AMeV

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    Isotopic effects in projectile spectator fragmentation at 600 AMeV have been investigated using data collected in recent experiments with SIS beams at the GSI laboratory and with the ALADiN forward-spectrometer. For this purpose, primary beams of 124Sn, as well as secondary beams of 124La and 107Sn produced at the FRS fragment separator have been used. Isoscaling in 124,107Sn+Sn reactions is investigated and results are compared with data taken with the INDRA multidetector for 12C+112,124Sn reactions

    Source shape determination with directional fragment-fragment velocity correlations

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    Correlation functions, constructed from directional projections of the relative velocities of fragments, are used to determine the shape of the breakup volume in coordinate space. For central collisions of 129Xe + natSn at 50 MeV per nucleon incident energy, measured with the 4pi multi-detector INDRA at GSI, a prolate shape aligned along the beam direction with an axis ratio of 1:0.7 is deduced. The sensitivity of the method is discussed in comparison with conventional fragment-fragment velocity correlations.Comment: 12 pages, 5 figures, subm. to Phys. Lett.

    Management of acute hypercortisolism

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    An occasional patient with Cushing's syndrome may require urgent management primarily because the chronic ravages of hypercortisolism have caused the patient to be in a precarious metabolic condition. The side effects of prolonged excess corticosteroids increase the risk of operations in such patients and must be considered in overall management. Among the many effects of hypercortisolism to be considered are hypertension, diabetes, ocular hypertension, myopathies, dermatologic changes including skin infection, pancreatitis, osteoporosis, pathological fractures, peptic ulcers, renal calculi, coagulopathies, hypokalemia, poor wound healing, and increased susceptibility to infection. The most effective way to avert these complications is by earlier diagnosis and definitive treatment of Cushing's syndrome. The present report includes a review of the etiology and diagnosis of Cushing's syndrome and the management of problems associated with hypercortisolism . Il est possible qu'un malade atteint de maladie de Cushing ait besoin d'ĂȘtre traitĂ© sans attente en raisons de troubles mĂ©taboliques sĂ©vĂšres dus aux effets nocifs de l'hypercortisolisme chronique qui augmentent les risques opĂ©ratoires et doivent ĂȘtre pris en considĂ©ration avant tout traitement. Il en est ainsi de l'hypertension, du diabĂšte, de l'hypertension intra-oculaire, des lĂ©sions dermiques comprenant l'infection cutanĂ©e, la pancrĂ©atite, l'ostĂ©oporose, les fractures pathologiques, l'ulcĂšre peptique, les calculs rĂ©naux, les coagulopathies, l'hypokaliĂ©mie, la lenteur du processus de cicatrisation et l'augmentation de la suceptibilitĂ© Ă  l'infection.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/41309/1/268_2005_Article_BF01655367.pd

    Effects of Intermittent IL-2 Alone or with Peri-Cycle Antiretroviral Therapy in Early HIV Infection: The STALWART Study

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    The Study of Aldesleukin with and without antiretroviral therapy (STALWART) evaluated whether intermittent interleukin-2 (IL-2) alone or with antiretroviral therapy (ART) around IL-2 cycles increased CD4+ counts compared to no therapy
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