The fruit of the spirit and the incarnational nature of the missional church

https://place.asburyseminary.edu/ecommonsatsdissertations/1291/thumbnail.jp

beta-Cu2V2O7: a spin-1/2 honeycomb lattice system

We report on band structure calculations and a microscopic model of the low-dimensional magnet beta-Cu2V2O7. Magnetic properties of this compound can be described by a spin-1/2 anisotropic honeycomb lattice model with the averaged coupling \bar J1=60-66 K. The low symmetry of the crystal structure leads to two inequivalent couplings J1 and J1', but this weak spatial anisotropy does not affect the essential physics of the honeycomb spin lattice. The structural realization of the honeycomb lattice is highly non-trivial: the leading interactions J1 and J1' run via double bridges of VO4 tetrahedra between spatially separated Cu atoms, while the interactions between structural nearest neighbors are negligible. The non-negligible inter-plane coupling Jperp~15 K gives rise to the long-range magnetic ordering at TN~26 K. Our model simulations improve the fit of the magnetic susceptibility data, compared to the previously assumed spin-chain models. Additionally, the simulated ordering temperature of 27 K is in remarkable agreement with the experiment. Our study evaluates beta-Cu2V2O7 as the best available experimental realization of the spin-1/2 Heisenberg model on the honeycomb lattice. We also provide an instructive comparison of different band structure codes and computational approaches to the evaluation of exchange couplings in magnetic insulators.Comment: 11 pages, 10 figures, 2 tables: revised version, extended description of simulation result

ACCESS - V. Dissecting ram-pressure stripping through integral-field spectroscopy and multi-band imaging

We study the case of a bright (L>L*) barred spiral galaxy from the rich cluster A3558 in the Shapley supercluster core (z=0.05) undergoing ram-pressure stripping. Integral-field spectroscopy, complemented by multi-band imaging, allows us to reveal the impact of ram pressure on the interstellar medium. We study in detail the kinematics and the physical conditions of the ionized gas and the properties of the stellar populations. We observe one-sided extraplanar ionized gas along the full extent of the galaxy disc. Narrow-band Halpha imaging resolves this outflow into a complex of knots and filaments. The gas velocity field is complex with the extraplanar gas showing signature of rotation. In all parts of the galaxy, we find a significant contribution from shock excitation, as well as emission powered by star formation. Shock-ionized gas is associated with the turbulent gas outflow and highly attenuated by dust. All these findings cover the whole phenomenology of early-stage ram-pressure stripping. Intense, highly obscured star formation is taking place in the nucleus, probably related to the bar, and in a region 12 kpc South-West from the centre. In the SW region we identify a starburst characterized by a 5x increase in the star-formation rate over the last ~100 Myr, possibly related to the compression of the interstellar gas by the ram pressure. The scenario suggested by the observations is supported and refined by ad hoc N-body/hydrodynamical simulations which identify a rather narrow temporal range for the onset of ram-pressure stripping around t~60 Myr ago, and an angle between the galaxy rotation axis and the intra-cluster medium wind of ~45 deg. Taking into account that the galaxy is found ~1 Mpc from the cluster centre in a relatively low-density region, this study shows that ram-pressure stripping still acts efficiently on massive galaxies well outside the cluster cores.Comment: 46 pages, 21 figures, accepted for publication; MNRAS 201

Quantification of finite-temperature effects on adsorption geometries of π\pi-conjugated molecules

The adsorption structure of the molecular switch azobenzene on Ag(111) is investigated by a combination of normal incidence x-ray standing waves and dispersion-corrected density functional theory. The inclusion of non-local collective substrate response (screening) in the dispersion correction improves the description of dense monolayers of azobenzene, which exhibit a substantial torsion of the molecule. Nevertheless, for a quantitative agreement with experiment explicit consideration of the effect of vibrational mode anharmonicity on the adsorption geometry is crucial.Comment: 12 pages, 3 figure

Cell clustering mediated by the adhesion protein PVRL4 is necessary for alpha6beta4 integrin-promoted ferroptosis resistance in matrix-detached cells

Ferroptosis is an iron-dependent form of programmed cell death characterized by the accumulation of lipid-targeting reactive oxygen species that kill cells by damaging their plasma membrane. The lipid-repair enzyme glutathione peroxidase 4 (GPX4) protects against this oxidative damage and enables cells to resist ferroptosis. Recent work has revealed that matrix-detached carcinoma cells can be susceptible to ferroptosis and that they can evade this fate through the signaling properties of the alpha6beta4 integrin, which sustains GPX4 expression. Although these findings on ferroptosis are provocative, they differ from those in previous studies indicating that matrix-detached cells are prone to apoptosis, via a process referred to as anoikis. In an effort to reconcile these discrepant findings, here we observed that matrix-detached epithelial and carcinoma cells cluster spontaneously via a mechanism that involves the cell adhesion protein PVRL4 (also known as Nectin-4). We found that this clustering process allows these cells to survive by stimulating a PVRL4/alpha6beta4/Src signaling axis that sustains GPX4 expression and buffers against lipid peroxidation. In the absence of alpha6beta4, PVRL4-mediated clustering induced an increase in lipid peroxidation that was sufficient for triggering ferroptosis. When the clustering was inhibited, single cells did not exhibit a significant increase in lipid peroxidation in the absence of alpha6beta4, and they were more susceptible to apoptosis than to ferroptosis. These results indicate that ferroptosis induction depends on cell clustering in matrix-detached cells that lack alpha6beta4 and imply that the fate of matrix-detached cells can be determined by the state of their cell-cell interactions

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking.

Mock communities are an important tool for validating, optimizing, and comparing bioinformatics methods for microbial community analysis. We present mockrobiota, a public resource for sharing, validating, and documenting mock community data resources, available at http://caporaso-lab.github.io/mockrobiota/. The materials contained in mockrobiota include data set and sample metadata, expected composition data (taxonomy or gene annotations or reference sequences for mock community members), and links to raw data (e.g., raw sequence data) for each mock community data set. mockrobiota does not supply physical sample materials directly, but the data set metadata included for each mock community indicate whether physical sample materials are available. At the time of this writing, mockrobiota contains 11 mock community data sets with known species compositions, including bacterial, archaeal, and eukaryotic mock communities, analyzed by high-throughput marker gene sequencing. IMPORTANCE The availability of standard and public mock community data will facilitate ongoing method optimizations, comparisons across studies that share source data, and greater transparency and access and eliminate redundancy. These are also valuable resources for bioinformatics teaching and training. This dynamic resource is intended to expand and evolve to meet the changing needs of the omics community

Connective-tissue growth factor modulates WNT signalling and interacts with the WNT receptor complex

Connective-tissue growth factor (CTGF) is a member of the CCN family of secreted proteins. CCN family members contain four characteristic domains and exhibit multiple activities: they associate with the extracellular matrix, they can mediate cell adhesion, cell migration and chemotaxis, and they can modulate the activities of peptide growth factors. Many of the effects of CTGF are thought to be mediated by binding to integrins, whereas others may be because of its recently identified ability to interact with BMP4 and TGF?. We demonstrate, using Xenopus embryos, that CTGF also regulates signalling through the Wnt pathway, in accord with its ability to bind to the Wnt co-receptor LDL receptor-related protein 6 (LRP6). This interaction is likely to occur through the C-terminal (CT) domain of CTGF, which is distinct from the BMP- and TGF?-interacting domain. Our results define new activities of CTGF and add to the variety of routes through which cells regulate growth factor activity in development, disease and tissue homeostasis

A highly-ionized region surrounding SN Refsdal revealed by MUSE

Supernova (SN) Refsdal is the first multiply-imaged, highly-magnified, and spatially-resolved SN ever observed. The SN exploded in a highly-magnified spiral galaxy at z=1.49 behind the Frontier Fields Cluster MACS1149, and provides a unique opportunity to study the environment of SNe at high z. We exploit the time delay between multiple images to determine the properties of the SN and its environment, before, during, and after the SN exploded. We use the integral-field spectrograph MUSE on the VLT to simultaneously target all observed and model-predicted positions of SN Refsdal. We find MgII emission at all positions of SN Refsdal, accompanied by weak FeII* emission at two positions. The measured ratios of [OII] to MgII emission of 10-20 indicate a high degree of ionization with low metallicity. Because the same high degree of ionization is found in all images, and our spatial resolution is too coarse to resolve the region of influence of SN Refsdal, we conclude that this high degree of ionization has been produced by previous SNe or a young and hot stellar population. We find no variability of the [OII] line over a period of 57 days. This suggests that there is no variation in the [OII] luminosity of the SN over this period, or that the SN has a small contribution to the integrated [OII] emission over the scale resolved by our observations.Comment: 5 pages, 4 figures, accepted for publication in A&

Protocol for the separation of extracellular vesicles by ultracentrifugation from in vitro cell culture models

Extracellular vesicles (EVs) play key roles in transporting key molecular constituents as cargo for extracellular trafficking. While several approaches have been developed to extract EVs from mammalian cells, the specific method of EV isolation can have a profound effect on membrane integrity and yield. Here, we describe a step-by-step procedure to separate EVs from adherent epithelial cells using differential ultracentrifugation. Separated EVs can be further analyzed by immunoblotting, mass spectrometry, and transmission electron microscopy to derive EV yield and morphology. For complete details on the use and execution of this protocol, please refer to Brown et al. (2019)

Three-body decay of 6^{6}Be

Three-body correlations for the ground-state decay of the lightest two-proton emitter $^{6}$Be are studied both theoretically and experimentally. Theoretical studies are performed in a three-body hyperspherical-harmonics cluster model. In the experimental studies, the ground state of $^{6}$Be was formed following the $\alpha$ decay of a $^{10}$C beam inelastically excited through interactions with Be and C targets. Excellent agreement between theory and experiment is obtained demonstrating the existence of complicated correlation patterns which can elucidate the structure of $^{6}$Be and, possibly, of the A=6 isobar.Comment: 17 pages, 21 figures, 5 table