AN EPIZOOTIC OF FIBROMATOSIS IN GRAY SQUIRRELS (SCIURUS CAROLINENSIS) IN FLORIDA

ABSTRACT: Beginning in the fall of 1998 and extending into the spring and early summer of 1999 there was a large epizootic of squirrel fibromatosis in squirrels in seven counties in peninsular Florida. Hundreds of gray squirrels (Sciurus carolinensis) with multiple cutaneous tumors were submitted or reported to biologists, veterinary hospitals, and private wildlife rehabilitators. Most squirrels died or were euthanized soon after submission. Twenty squirrels were submitted for necropsy. The majority of the squirrels examined were adults (12/20) and male (15/20). The number and location of tumors varied widely among the affected squirrels; however, a consistent finding was involvement of the eyelids (20/20). Histopathology revealed a proliferative population of mesenchymal cells within the dermis and marked ballooning degeneration of keratinocytes in the overlying epidermis. Intracytoplasmic viral inclusions were present in the neoplastic mesenchymal cell population and the degenerating keratinocytes. Ulceration and necrosis of the surface of the tumors or associated tissues was present in 14 of the 20 squirrels. Virions consistent with poxvirus were observed via electron microscopy in samples collected from a representative tumor. Death of the squirrels was attributed to emaciation, tissue damage, and severe negative energy balance associated with poxvirus infection and massive tumor growth. The underlying cause of this unusual epizootic of fibromatosis in gray squirrels remains unknown

Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution

A birth-death process is a continuous-time Markov chain that counts the number of particles in a system over time. In the general process with $n$ current particles, a new particle is born with instantaneous rate $\lambda_n$ and a particle dies with instantaneous rate $\mu_n$. Currently no robust and efficient method exists to evaluate the finite-time transition probabilities in a general birth-death process with arbitrary birth and death rates. In this paper, we first revisit the theory of continued fractions to obtain expressions for the Laplace transforms of these transition probabilities and make explicit an important derivation connecting transition probabilities and continued fractions. We then develop an efficient algorithm for computing these probabilities that analyzes the error associated with approximations in the method. We demonstrate that this error-controlled method agrees with known solutions and outperforms previous approaches to computing these probabilities. Finally, we apply our novel method to several important problems in ecology, evolution, and genetics

A complementary study approach unravels novel players in the pathoetiology of Hirschsprung disease

Hirschsprung disease (HSCR, OMIM 142623) involves congenital intestinal obstruction caused by dysfunction of neural crest cells and their progeny during enteric nervous system (ENS) development. HSCR is a multifactorial disorder; pathogenetic variants accounting for disease phenotype are identified only in a minority of cases, and the identification of novel disease-relevant genes remains challenging. In order to identify and to validate a potential disease-causing relevance of novel HSCR candidate genes, we established a complementary study approach, combining whole exome sequencing (WES) with transcriptome analysis of murine embryonic ENS-related tissues, literature and databas

The Thickness of the Mantle Lithosphere and Collision-Related Volcanism in the Lesser Caucasus

The Lesser Caucasus mountains sit on a transition within the Arabia–Eurasia collision zone between very thin lithosphere (<100 km) to the west, under Eastern Anatolia, and a very thick lithospheric root (up to 200 km) in the east, under western Iran. A transect of volcanic highlands running from NW to SE in the Lesser Caucasus allows us to look at the effects of lithosphere thickness variations on the geochemistry of volcanic rocks in this continental collision zone. Volcanic rocks from across the region show a wide compositional range from basanites to rhyolites, and have arc-like geochemical characteristics, typified by ubiquitous negative Nb–Ta anomalies. Magmatic rocks from the SE, where the lithosphere is thought to be thicker, are more enriched in incompatible trace elements, especially the light rare earth elements, Sr and P. They also have more radiogenic ⁸⁷Sr/⁸⁶Sr, and less radiogenic ¹⁴³Nd/¹⁴⁴Nd. Across the region, there is no correlation between SiO₂ content and Sr–Nd isotope ratios, revealing a lack of crustal contamination. Instead, ‘spiky’ mid-ocean ridge basalt normalized trace element patterns are the result of derivation from a subduction-modified mantle source, which probably inherited its subduction component from subduction of the Tethys Ocean prior to the onset of continent–continent collision in the late Miocene. In addition to the more isotopically enriched mantle source, modelling of non-modal batch melting suggests lower degrees of melting and the involvement of garnet as a residual phase in the SE. Melt thermobarometry calculations based on bulk-rock major elements confirm that melting in the SE must occur at greater depths in the mantle. Temperatures of melting below 1200°C, along with the subduction-modified source, suggest that melting occurred within the lithosphere. It is proposed that in the northern Lesser Caucasus this melting occurs close to the base of the very thin lithosphere (at a depth of ∼45 km) as a result of small-scale delamination. A striking similarity between the conditions of melting in NW Iran and the southern Lesser Caucasus (two regions between which the difference in lithosphere thickness is ∼100 km) suggests a common mechanism of melt generation in the mid-lithosphere (∼75 km). The southern Lesser Caucasus magmas result from mixing between partial melts of deep lithosphere (∼120 km in the south) and mid-lithosphere sources to give a composition intermediate between magmas from the northern Lesser Caucasus and NW Iran. The mid-lithosphere magma source has a distinct composition compared with the base of the lithosphere, which is argued to be the result of the increased retention of metasomatic components in phases such as apatite and amphibole, which are stabilized by lower temperatures prior to magma generation

Chemical Fractionation and Soil-to-Plant Transfer Characteristics of Heavy Metals in a Sludge Deposit Field of the River Ruhr, Germany

The presented study assessed the heavy metal contamination risk in a former sludge deposit field of the River Ruhr in Essen, Germany. Therefore, the temporal and spatial distribution in soils and plants, chemical fractionation, mobilization potential, and transfer characteristics have been investigated. Soil samples, roots and shoots of rushes (Juncus sp.), and stem wood disks of willows (Salix sp.) were analyzed for Zn, Cu, Pb, Ni, Cr, and Cd. Plant available and mobile heavy metal portions have been determined using a sequential extraction procedure. The results show that the soils and the rushes are highly contaminated, although there is a considerable decrease compared to initial concentrations some 20 years ago. The willows show only small heavy metal enrichment. pH induced mobilization potential in soil is high for Cd, Zn and Ni. Additionally, these elements contain high portions of plant-available fractions. High transfer rates from soil to roots and very high rates from roots to shoots of rushes have been determined for Cd and Zn, indicating an accumulation of these elements in shoots of rushes. The rushes reflect the temporal and spatial heavy metal distribution in soil and might thus be used as a bioindicator or for phytoremediation

Base and precious metal mineralization in Middle Jurassic rocks of the Lesser Caucasus: A review of geology and metallogeny and new data from the Kapan, Alaverdi and Mehmana districts.

The polymetallic Cu–Au–Ag–Zn ± Pb, Cu–Au and Cu deposits in the Kapan, Alaverdi and Mehmana mining districts of Armenia and the Nagorno–Karabakh region form part of the Tethyan belt. They are hosted by Middle Jurassic rocks of the Lesser Caucasus paleo-island arc, which can be divided into the Kapan Zone and the Somkheto– Karabakh Island Arc. Mineralization in Middle Jurassic rocks of this paleo-island arc domain formed during the first of three recognized Mesozoic to Cenozoic metallogenic epochs. The Middle Jurassic to Early Cretaceous metallogenic epoch comprises porphyry Cu, skarn and epithermal deposits related to Late Jurassic and Early Cretaceous intrusions. The second and third metallogenic epochs of the Lesser Caucasus are represented by Late Cretaceous volcanogenic massive sulfide (VMS) deposits with transitional features towards epithermal mineraliza- tion and by Eocene to Miocene world-class porphyry Mo–Cu and epithermal precious metal deposits, respectively. The ore deposits in the Kapan, Alaverdi and Mehmana mining districts are poorly understood and previous re- searchers named them as copper–pyrite, Cu–Au or polymetallic deposits. Different genetic origins were proposed for their formation, including VMS and porphyry-related scenarios. The ore deposits in the Kapan, Alaverdi and Mehmana mining districts are characterized by diverse mineralization styles, which include polymetallic veins, massive stratiform replacement ore bodies at lithological contacts, and stockwork style mineralization. Sericitic, argillic and advanced argillic alteration assemblages are widespread in the deposits which have intermediate to high-sulfidation state mineral parageneses that consist of tennantite–tetrahedrite plus chalcopyrite and enargite–luzonite–colusite, respectively. The ore deposits are spatially associated with differentiated calc- alkaline intrusions and pebble dykes are widespread. Published δ34S values for sulfides and sulfates are in agree- ment with a magmatic source for the bulk sulfur whereas published δ34S values of sulfate minerals partly overlap with the isotopic composition of contemporaneous seawater. Published mineralization ages demonstrate discrete ore forming pulses from Middle Jurassic to the Late Jurassic–Early Cretaceous boundary, indicating time gaps of 5 to 20 m.y. in between the partly subaqueous deposition of the host rocks and the epigenetic mineralization. Most of the described characteristics indicate an intrusion-related origin for the ore deposits in Middle Jurassic rocks of the Lesser Caucasus, whereas a hybrid VMS–epithermal–porphyry scenario might apply for deposits with both VMS- and intrusion-related features. The volcanic Middle Jurassic host rocks for mineralization and Middle to Late Jurassic intrusive rocks from the Somkheto–Karabakh Island Arc and the Kapan Zone show typical subduction-related calc-alkaline signature. They are enriched in LILE such as K, Rb and Ba and show negative anomalies in HFSE such as Nb and Ta. The ubiquitous presence of amphibole in Middle Jurassic volcanic rocks reflects magmas with high water contents. Flat REE patterns ([La/Yb]N = 0.89–1.23) indicate a depleted mantle source, and concave-upward (listric-shaped) MREE–HREE pat- terns ([Dy/Yb]N = 0.75–1.21) suggest melting from a shallow mantle reservoir. Similar trace element patterns of Middle Jurassic rocks from the Somkheto–Karabakh Island Arc and the Kapan Zone indicate that these two tectonic units form part of one discontinuous segmented arc. Similar petrogenetic and ore-forming processes operated along its axis and Middle Jurassic volcanic and volcanosedimentary rocks constitute the preferential host for polymetallic Cu–Au–Ag–Zn ± Pb, Cu–Au and Cu mineralization, both in the Somkheto–Karabakh Island Arc and the Kapan Zone