Variation of blubber thickness for three marine mammal species in the southern Baltic Sea

Evaluating populational trends of health condition has become an important topic for marine mammal populations under the Marine Strategy Framework Directive (MSFD). In the Baltic Sea, under the recommendation of Helsinki Commission (HELCOM), efforts have been undertaken to use blubber thickness as an indicator of energy reserves in marine mammals. Current values lack geographical representation from the entire Baltic Sea area and a large dataset is only available for grey seals (Halichoerus grypus) from Sweden and Finland. Knowledge on variation of blubber thickness related to geography throughout the Baltic Sea is important for its usage as an indicator. Such evaluation can provide important information about the energy reserves, and hence, food availability. It is expected that methodological standardization under HELCOM should include relevant datasets with good geographical coverage that can also account for natural variability in the resident marine mammal populations. In this study, seasonal and temporal trends of blubber thickness were evaluated for three marine mammal species—harbor seal (Phoca vitulina), grey seal (Halichoerus grypus) and harbor porpoise (Phocoena phocoena)—resident in the southern Baltic Sea collected and investigated under stranding networks. Additionally, the effects of age, season and sex were analyzed. Seasonal variation of blubber thickness was evident for all species, with harbor seals presenting more pronounced effects in adults and grey seals and harbor porpoises presenting more pronounced effects in juveniles. For harbor seals and porpoises, fluctuations were present over the years included in the analysis. In the seal species, blubber thickness values were generally higher in males. In harbor seals and porpoises, blubber thickness values differed between the age classes: while adult harbor seals displayed thicker blubber layers than juveniles, the opposite was observed for harbor porpoises. Furthermore, while an important initial screening tool, blubber thickness assessment cannot be considered a valid methodology for overall health assessment in marine mammals and should be complemented with data on specific health parameters developed for each speciesinfo:eu-repo/semantics/publishedVersio

Investigating harbor porpoise (Phocoena phocoena) population differentiation using RAD-tag genotyping by sequencing

The population status of the harbor porpoise ( Phocoena phocoena ) in the Baltic Sea and adjacent regions is still not fully resolved. Here, we present a pilot study using the double digest restriction-site associated DNA sequencing (ddRAD-seq) genotyping- by -sequencing method on specimens from the Baltic Sea, eastern North Sea, Spain and the Black Sea. From a single Illumina lane and a set of 49 individuals, w e obtained around 6000 SNPs. We used these markers to estimate population structure and differentiation, and identified splits between porpoises from the North Sea and the Baltic, and within regions in the Baltic Sea (between the Belt Sea and the Inner Baltic Sea). The SNP analysis confirms population structure elucidated by previous mtDNA/microsatellite studies. We demonstrate the feasibility of SNP analysis on opportunistically sampled cetacean samples, with varying DNA quality, for population diversity and divergence analysis

Estimating the abundance of the critically endangered Baltic Proper harbour porpoise (Phocoena phocoena) population using passive acoustic monitoring

The SAMBAH project was funded by the LIFE+ program of the European Commission (LIFE08 NAT/S/000261) and co-funded by Bundesamt für Naturschutz, Germany (SAMBAH II 5 Vw/52602/2011-Mar 36032/66); Bundesministerium für Umwelt, Naturschutz und Reaktorsicherheit, Germany (COSAMM FKZ 0325238); Carlsbergfondet, Denmark (CF16-0861); European Association of Zoos and Aquaria, The Netherlands; Główny Inpektorat Ochrony Środowiska, Poland; Havs-och Vattenmyndigheten, Sweden; Instytut Meteorologii i Gospodarki Wodnej - Państwowy Instytut Badawczy, Poland; Japanese Science and Technology Agency-CREST, Japan (7620-7); Kolmårdens Djurpark, Sweden; Maailman Luonnon Säätiö (WWF) Suomen Rahasto, Finland; Miljøministeriet, Denmark; Miljø- og Fødevareministeriet, Denmark (SN 343/SN-0008); Narodowy Fundusz Ochrony Środowiska i Gospodarki Wodnej, Poland (561/2009/Wn-50/OP/RE-LF/D); Naturvårdsverket, Sweden; SNAK Ph.D. School, Aarhus University, Denmark (91147/365); Tampereen Särkänniemi Ltd., Finland; Turun ammattikorkeakoulu Oy, Finland; Uniwersytet Gdański, Poland; Wojewódzki Fundusz Ochrony Środowiska i Gospodarki Wodnej w Gdańsku, Poland; and Ympäristöministeriö, Finland.Knowing the abundance of a population is a crucial component to assess its conservation status and develop effective conservation plans. For most cetaceans, abundance estimation is difficult given their cryptic and mobile nature, especially when the population is small and has a transnational distribution. In the Baltic Sea, the number of harbour porpoises (Phocoena phocoena) has collapsed since the mid-20th century and the Baltic Proper harbour porpoise is listed as Critically Endangered by the IUCN and HELCOM; however, its abundance remains unknown. Here, one of the largest ever passive acoustic monitoring studies was carried out by eight Baltic Sea nations to estimate the abundance of the Baltic Proper harbour porpoise for the first time. By logging porpoise echolocation signals at 298 stations during May 2011-April 2013, calibrating the loggers' spatial detection performance at sea, and measuring the click rate of tagged individuals, we estimated an abundance of 71-1105 individuals (95% CI, point estimate 491) during May-October within the population's proposed management border. The small abundance estimate strongly supports that the Baltic Proper harbour porpoise is facing an extremely high risk of extinction, and highlights the need for immediate and efficient conservation actions through international cooperation. It also provides a starting point in monitoring the trend of the population abundance to evaluate the effectiveness of management measures and determine its interactions with the larger neighboring Belt Sea population. Further, we offer evidence that design-based passive acoustic monitoring can generate reliable estimates of the abundance of rare and cryptic animal populations across large spatial scales.Publisher PDFPeer reviewe

Mitochondrial Control Region and microsatellite analyses on harbour porpoise (Phocoena phocoena) unravel population differentiation in the Baltic Sea and adjacent waters

The population status of the harbour porpoise (Phocoena phocoena) in the Baltic area has been a continuous matter of debate. Here we present the by far most comprehensive genetic population structure assessment to date for this region, both with regard to geographic coverage and sample size: 497 porpoise samples from North Sea, Skagerrak, Kattegat, Belt Sea, and Inner Baltic Sea were sequenced at the mitochondrial Control Region and 305 of these specimens were typed at 15 polymorphic microsatellite loci. Samples were stratified according to sample type (stranding vs. by-caught), sex, and season (breeding vs. non-breeding season). Our data provide ample evidence for a population split between the Skagerrak and the Belt Sea, with a transition zone in the Kattegat area. Among other measures, this was particularly visible in significant frequency shifts of the most abundant mitochondrial haplotypes. A particular haplotype almost absent in the North Sea was the most abundant in Belt Sea and Inner Baltic Sea. Microsatellites yielded a similar pattern (i.e., turnover in occurrence of clusters identified by STRUCTURE). Moreover, a highly significant association between microsatellite assignment and unlinked mitochondrial haplotypes further indicates a split between North Sea and Baltic porpoises. For the Inner Baltic Sea, we consistently recovered a small, but significant separation from the Belt Sea population. Despite recent arguments that separation should exceed a predefined threshold before populations shall be managed separately, we argue in favour of precautionary acknowledging the Inner Baltic porpoises as a separate management unit, which should receive particular attention, as it is threatened by various factors, in particular local fishery measures. © Springer Science+Business Media B.V. 2009

Working Group on Marine Mammal Ecology (WGMME)

162 pages.-- This work is licensed under the Creative Commons Attribution 4.0 International Licence (CC BY 4.0)The Working Group on Marine Mammal Ecology met in 2021 to address new information on marine mammal ecology relevant to management. Two terms of references were standing ToRs; under the first of these, ToR A, new and updated information on seal and cetacean population abundance, population/stock structure, manage-ment frameworks as well as anthropogenic threats to individual health and population status were reviewed along with findings on threats to marine mammals such as bycatch, pollution, marine debris and noise. ToR B is a cooperation with WGBIODIV to review species-specific for-aging distributions (considering horizontal and vertical dimensions depending on data availa-bility) and to estimate consumption by marine mammal species representative in case study ar-eas. ToR C was implemented to review aspects of marine mammal fishery interactions not cov-ered by ICES WGBYC. ToR D is the second standing ToR and concerns updating the WGMME seal database, which was updated with the latest dataN

Prevalence and molecular characterisation of Acanthocephala in pinnipedia of the North and Baltic Seas

Harbour seals (Phoca vitulina) and grey seals (Halichoerus grypus) are final hosts of acanthocephalans in the German North and Baltic Seas. Parasitic infections in seals can cause pathological changes, which may result in deteriorated health of the host. Common gastrointestinal parasites of harbour and grey seals are acanthocephalans and a number of 275 of 2460 (11.2%) investigated seals from 1996 to 2013 were infected with Corynosoma spp. (Acanthocephala, Polymorphidae). The prevalence showed a wave-like pattern: it increased from 1.2% and 0.4% in 1996 and 1997, respectively, to 23.9% during the second phocine distemper epizootic in 2002 and decreased to 6.2% in 2004. In 2005, prevalence peaked again with 25.0% followed by a decrease to 9.3% in 2009 and an increase to 38.5% in 2012. Statistical analysis revealed that harbour seals originating from the North Sea showed a higher prevalence than grey seals, whereas no significant difference between grey and harbour seals from the Baltic Sea was observed. Furthermore, juvenile pinnipedia from the North Sea were significantly less infected with Corynosoma spp. than seals older than seven month. Molecular species identification as well as phylogenetic relationship analysis among the detected Corynosoma species were achieved by sequencing and comparisons of the ribosomal ITS1-5.8S-ITS2-complex and cytochrome-c-oxidase I gene. Molecular analysis resulted in a newly arranged distribution of Acanthocephala in the North Sea as in contrast to previous studies, C. strumosum could not be confirmed as predominant species. Instead, C. magdaleni and a C. magdaleni isolate (isolate Pv1NS) with an atypical number of longitudinal rows of hooks at the proboscis were detected. Furthermore, morphological and molecular analyses indicate the possible finding of a cryptic species (Candidatus Corynosoma nortmeri sp. nov.). Keywords: Acanthocephala, Acantocephalans, Corynosoma, Seals, ITS, Cytochrome-c-oxidase, Marine parasite

Grey seal Halichoerus grypus recolonisation of the southern Baltic Sea, Danish Straits and Kattegat

The grey seal became locally extinct in the southern Baltic Sea, Danish Straits and Kattegat in the early 1900s after prolonged culling campaigns. Here, we combine national monitoring and anecdotal data from Denmark, Sweden, Germany and Poland to report on the grey seal's recolonisation of those areas and the initial reestablishment of breeding colonies. Grey seal occurrence has steadily increased since year 2003 as evidenced by the coordinated Baltic Sea moult censuses. At the first census in 2003, there were 146 grey seals along the southern Baltic coasts of Sweden and Denmark, ca 1% of the total Baltic Sea population count. Since 2015, this has increased to 2000–2600 grey seals, or ca 7% of the total population count. Since the local extinction, there have been sporadic breeding events in the 1940s on sea ice around Bornholm and in the 1980s and 1990s on haul-outs in Kattegat. In 2003, the first two pups in the southern Baltic Sea were recorded at Rødsand, Denmark. This is to date the only site in the southern Baltic Sea with regular annual pupping since the recolonisation. Since 2000, there have also been sporadic breeding events in Danish Kattegat, southern Sweden, Poland and Germany. At Rødsand, there have been at least 3–10 pups recorded every year since initiation of monitoring in 2011, with an increasing tendency until 2017 with 10 pups counted, which subsequently decreased to 5–6 pups annually in 2018–2020. Compared to recolonising events in the Atlantic, the numbers of pups are low. This may be caused by differences in population dynamics, recolonisation distances, habitat and mortality and effects of rehabilitation programmes. It is likely that the breeding distribution will spread throughout the southern Baltic, Danish Straits and Kattegat if appropriate protection measures of seals and haul-outs are installed

Evolutionary history and seascape genomics of Harbour porpoises (Phocoena phocoena) across environmental gradients in the North Atlantic and adjacent waters

The Harbour porpoise (Phocoena phocoena) is a highly mobile cetacean species primarily occurring in coastal and shelf waters across the Northern hemisphere. It inhabits heterogeneous seascapes broadly varying in salinity and temperature. Here, we produced 74 whole genomes at intermediate coverage to study Harbour porpoise's evolutionary history and investigate the role of local adaptation in the diversification into subspecies and populations. We identified ~6 million high quality SNPs sampled at eight localities across the North Atlantic and adjacent waters, which we used for population structure, demographic and genotype–environment association analyses. Our results suggest a genetic differentiation between three subspecies (P.p. relicta, P.p. phocoena and P.p. meridionalis), and three distinct populations within P.p. phocoena: Atlantic, Belt Sea and Proper Baltic Sea. Effective population size and Tajima's D suggest population contraction in Black Sea and Iberian porpoises, but expansion in the P.p. phocoena populations. Phylogenetic trees indicate post-glacial colonization from a southern refugium. Genotype–environment association analysis identified salinity as major driver in genomic variation and we identified candidate genes putatively underlying adaptation to different salinity. Our study highlights the value of whole genome resequencing to unravel subtle population structure in highly mobile species, shows how strong environmental gradients and local adaptation may lead to population differentiation, and how neutral and adaptive markers can give different perspectives on population subdivision. The results have great conservation implications as we found inbreeding and low genetic diversity in the endangered Black Sea subspecies and identified the critically endangered Proper Baltic Sea porpoises as a separate population.Hälsoövervakning av marina däggdju

Spectra of the stimulus tone pips.

<p>Spectra of the generated (2-1-2) tone pip stimuli for the desired centre frequencies measured with the artificial ear. The peak frequencies showed a shift to frequencies lower than the desired peak frequencies for tone pips with centre frequencies ≥5.6 kHz. Signal distortion worsened and the bandwidth became more asymmetric relative to the centre frequency as the centre frequency of the tone pip increased.</p