Space-time sensors using multiple-wave atom levitation

The best clocks to date control the atomic motion by trapping the sample in an optical lattice and then interrogate the atomic transition by shining on these atoms a distinct laser of controlled frequency. In order to perform both tasks simultaneously and with the same laser field, we propose to use instead the levitation of a Bose-Einstein condensate through multiple-wave atomic interferences. The levitating condensate experiences a coherent localization in momentum and a controlled diffusion in altitude. The sample levitation is bound to resonance conditions used either for frequency or for acceleration measurements. The chosen vertical geometry solves the limitations imposed by the sample free fall in previous optical clocks using also atomic interferences. This configuration yields multiple-wave interferences enabling levitation and enhancing the measurement sensitivity. This setup, analogous to an atomic resonator in momentum space, constitutes an attractive alternative to existing atomic clocks and gravimeters.Comment: 5 pages, 4 figures.Final versio

Theoretical tools for atom laser beam propagation

We present a theoretical model for the propagation of non self-interacting atom laser beams. We start from a general propagation integral equation, and we use the same approximations as in photon optics to derive tools to calculate the atom laser beam propagation. We discuss the approximations that allow to reduce the general equation whether to a Fresnel-Kirchhoff integral calculated by using the stationary phase method, or to the eikonal. Within the paraxial approximation, we also introduce the ABCD matrices formalism and the beam quality factor. As an example, we apply these tools to analyse the recent experiment by Riou et al. [Phys. Rev. Lett. 96, 070404 (2006)]

Toward a test of angular momentum coherence in a twin-atom interferometer

We present a scheme well-suited to investigate quantitatively the angular momentum coherence of molecular fragments. Assuming that the dissociated molecule has a null total angular momentum, we investigate the propagation of the corresponding atomic fragments in the apparatus. We show that the envisioned interferometer enables one to distinguish unambiguously a spin-coherent from a spin-incoherent dissociation, as well as to estimate the purity of the angular momentum density matrix associated with the fragments. This setup, which may be seen as an atomic analogue of a twin-photon interferometer, can be used to investigate the suitability of molecule dissociation processes -- such as the metastable hydrogen atoms H($2^2 S$)-H($2^2 S$) dissociation - for coherent twin-atom optics.Comment: 6 pages, 3 Figures. Final version accepted for publication in Europhysics Letter

Precision atomic gravimeter based on Bragg diffraction

We present a precision gravimeter based on coherent Bragg diffraction of freely falling cold atoms. Traditionally, atomic gravimeters have used stimulated Raman transitions to separate clouds in momentum space by driving transitions between two internal atomic states. Bragg interferometers utilize only a single internal state, and can therefore be less susceptible to environmental perturbations. Here we show that atoms extracted from a magneto-optical trap using an accelerating optical lattice are a suitable source for a Bragg atom interferometer, allowing efficient beamsplitting and subsequent separation of momentum states for detection. Despite the inherently multi-state nature of atom diffraction, we are able to build a Mach-Zehnder interferometer using Bragg scattering which achieves a sensitivity to the gravitational acceleration of $\Delta g/g = 2.7\times10^{-9}$ with an integration time of 1000s. The device can also be converted to a gravity gradiometer by a simple modification of the light pulse sequence.Comment: 13 pages, 11 figure

PARL deficiency in mouse causes Complex III defects, coenzyme Q depletion, and Leigh-like syndrome

The mitochondrial intramembrane rhomboid protease PARL has been implicated in diverse functions in vitro, but its physiological role in vivo remains unclear. Here we show that ablation in mouse causes a necrotizing encephalomyelopathy similar to Leigh syndrome, a mitochondrial disease characterized by disrupted energy production. Mice with conditional PARL deficiency in the nervous system, but not in muscle, develop a similar phenotype as germline KOs, demonstrating the vital role of PARL in neurological homeostasis. Genetic modification of two major PARL substrates, PINK1 and PGAM5, do not modify this severe neurological phenotype. brain mitochondria are affected by progressive ultrastructural changes and by defects in Complex III (CIII) activity, coenzyme Q (CoQ) biosynthesis, and mitochondrial calcium metabolism. PARL is necessary for the stable expression of TTC19, which is required for CIII activity, and of COQ4, which is essential in CoQ biosynthesis. Thus, PARL plays a previously overlooked constitutive role in the maintenance of the respiratory chain in the nervous system, and its deficiency causes progressive mitochondrial dysfunction and structural abnormalities leading to neuronal necrosis and Leigh-like syndrome

Synaptotagmin 5 regulates Ca2+-dependent Weibel-Palade body exocytosis in human endothelial cells.

Membrane protein insertion is an essential cellular process. The broad biophysical and topological range of membrane proteins necessitates multiple insertion pathways, which remain incompletely defined. Here, we have discovered a new membrane protein insertion pathway, identified the class of substrates it handles, explained why other known pathways do not work for these substrates and reconstituted the pathway using purified components

Matter-wave cavity gravimeter

We propose a gravimeter based on a matter-wave resonant cavity loaded with a Bose-Einstein condensate and closed with a sequence of periodic Raman pulses. The gravimeter sensitivity increases quickly with the number of cycles experienced by the condensate inside the cavity. The matter wave is refocused thanks to a spherical wave-front of the Raman pulses. This provides a transverse confinement of the condensate which is discussed in terms of a stability analysis. We develop the analogy of this device with a resonator in momentum space for matter waves.Comment: 15 pages, 6 Figures. The expression for the atomic mirror focal length has been corrected. Other minor corrections and actualizations to the previously published versio

Inferring serum proteolytic activity from LC-MS/MS data

<p>Abstract</p> <p>Background</p> <p>In this paper we deal with modeling serum proteolysis process from tandem mass spectrometry data. The parameters of peptide degradation process inferred from LC-MS/MS data correspond directly to the activity of specific enzymes present in the serum samples of patients and healthy donors. Our approach integrate the existing knowledge about peptidases' activity stored in MEROPS database with the efficient procedure for estimation the model parameters.</p> <p>Results</p> <p>Taking into account the inherent stochasticity of the process, the proteolytic activity is modeled with the use of Chemical Master Equation (CME). Assuming the stationarity of the Markov process we calculate the expected values of digested peptides in the model. The parameters are fitted to minimize the discrepancy between those expected values and the peptide activities observed in the MS data. Constrained optimization problem is solved by Levenberg-Marquadt algorithm.</p> <p>Conclusions</p> <p>Our results demonstrates the feasibility and potential of high-level analysis for LC-MS proteomic data. The estimated enzyme activities give insights into the molecular pathology of colorectal cancer. Moreover the developed framework is general and can be applied to study proteolytic activity in different systems.</p