Bidirectional motion of filaments: Role of motor proteins and passive cross linkers

In eukaryotic cells, motor proteins (MP) bind to cytoskeletal filaments and move along them in a directed manner generating active stresses. During cell division a spindle structure of overlapping antiparallel microtubules (MT) form whose stability and dynamics under the influence of MPs has been studied extensively. Although passive cross linkers (PCL) were known to provide structural stability to filamentous network, consequences of the interplay between ATP dependent active forces of MPs and passive entropic forces of PCLs on MT overlap remains largely unexplored. Here, we formulate and characterize a model to study this, using linear stability analysis and numerical integration. In presence of PCLs, we find dynamic phase transitions with changing activity exhibiting regimes of stable partial overlap with or without oscillations, instability towards complete overlap, and stable limit cycle oscillations that emerge via a supercritical Hopf bifurcation characterized by an oscillation frequency determined by the MP and PCL parameters. We show that the overlap dynamics and stability depend crucially on whether both the MTs of overlapping pair are movable or one is immobilized, having potential implications for in vivo and in vitro studies.Comment: 13 pages, 9 figure

Mental disorders in primary health care: a study of their frequency and diagnosis in four developing countries

1624 patients who were attending primary health facilities in 4 developing countries were examined to determine how many were suffering from mental disorder. Using stringent criteria to establish the presence of psychiatric morbidity, 225 cases were found, indicating an overall frequency of 13·9 %. The great majority of cases were suffering from neurotic illnesses and for most the presenting complaint was of a physical symptom, such as headache, abdominal pain, cough or weakness. The health workers following their normal procedure correctly detected one third of the psychiatric case

Influence of metal organic chemical vapour deposition growth conditions on vibrational and luminescent properties of ZnO nanorods

Producción CientíficaA detailed optical characterization by means of micro Raman and cathodoluminescence spectroscopy of catalyst-free ZnO nanorods grown by atmospheric-metal organic chemical vapour deposition has been carried out. This characterization has allowed correlating the growth conditions, in particular the precursors partial-pressures and growth time, with the optical properties of nanorods. It has been shown that a high Zn supersaturation can favor the incorporation of nonradiative recombination centers, which can tentatively be associated with ZnI-related defects. Characterization of individual nanorods has evidenced that ZnI-related defects have a tendency to accumulate in the tip part of the nanorods, which present dark cathodoluminescence contrast with respect to the nanorods bottom. The effect of a ZnO buffer layer on the properties of the nanorods has been also investigated, showing that the buffer layer improves the luminescence efficiency of the ZnO nanorods, revealing a significant reduction of the concentration of nonradiative recombination centers.Ministerio de Ciencia e Innovación (Projects MAT2007-66129, MAT-2010-20441-C02, MAT-2010-16116, and TEC2011-28076-C02-02)Generalitat Valenciana (Prometeo/2011-035 and ISIC/2012/008, Institute of Nanotechnologies for Clean Energies

Mitogenome and Nuclear-encoded Fungicide-target Genes of Thecaphora frezii - Causal Agent of Peanut Smut

Background: Thecaphora frezii Carranza and Lindquist causes smut disease in peanut (Arachis hypogaea L.) resulting in up to 35% yield losses. Fungicides have shown ineffective in controlling the disease; whereas research on the molecular basis of that fungicide resistance has been hindered because of the lack of genetic information about T. frezii. The goal of this work was to provide molecular information about fungicide-target loci in T. frezii, including its mitochondrial genome (mitogenome) and critical nuclear-encoded genes. Results: Here we report the complete annotated mitogenome of T. frezii, a 123,773 bp molecule containing the standard 14 genes that form part of mitochondrial complexes I, III, IV and V, 22 transfer RNAs, small and large subunits of ribosomal RNA, DNA polymerase, ribonuclease P, GII-reverse transcriptase/maturase, nine hypothetical open-reading frames and homing endonucleases (LAGLIDADG, GIY-YIG, HEG). In addition, we report the full-length cDNA sequence of T. frezii cytochrome b (cob) and cytochrome oxidase 1 (cox1) genes; as well as partial sequences of T. frezii succinate dehydrogenase (sdhb), ergosterol biosynthesis (Erg4), cytochrome P450 (cyp51), and beta tubulin (β-tubulin) genes, which are respective targets of strobilurins, quinone oxidation inhibitors, triazoles and beta-tubulin inhibitor fungicides commonly used in the peanut crop. Translation of cob and sdhb genes in this particular T. frezii isolate suggests potential resistance to strobilurin and carboxamide fungicides. Conclusion: The mitogenome and nuclear-encoded gene sequences presented here provide the molecular tools to research T. frezii fungicide-target loci

Marine algal flora of Formigas Islets, Azores

BACKGROUND: The oldest reference to marine life in Formigas Islets (oriental group of the Azores archipelago) goes back to the 16th century. Nevertheless, their macroalgal flora is poorly known, the published information mainly resulting from occasional collections of sporadic visitors. To overcome this and contribute to the knowledge of Azorean macroalgal flora at both local and regional scales, a thorough investigation was conducted in 1990 and 1991 under two expeditions promoted by the Marine Biology Research Group of the Department of Biology, University of the Azores. Collections and presence data recordings were undertaken at the littoral and sublittoral levels down to approximately 40 m, in an area of approximately 0.04 km2. This paper lists the taxonomic records and provides information regarding each species’ ecology and occurrence on the Islets’ littoral. NEW INFORMATION: A total of 320 specimens are registered (including taxa identified only at generic level) belonging to 90 taxa of macroalgae, from which 70 were diagnosed at species level. The confirmed species comprise 39 Rhodophyta, 12 Chlorophyta and 19 Ochrophyta (Phaeophyceae), distributed in 22 orders (13 Rhodophyta, 3 Chlorophyta and 6 Ochrophyta) and 37 families (24 Rhodophyta, 6 Chlorophyta and 7 Ochrophyta). Sixty-one species represent new records for the Islets, from which Botryocladia macaronesica Afonso-Carrillo, Sobrino, Tittley & Neto and Laurencia viridis Gil-Rodriguez & Haroun are Macaronesian endemisms. Most species are native to the Azores, but six have an uncertain origin and four are introduced (the Rhodophyta Asparagopsis armata Harvey; Laurencia dendroidea J.Agardh; Neoizziella divaricata (C.K.Tseng) S.-M.Lin, S.-Y.Yang & Huisman and the Ochrophyta Hydroclathrus tilesii (Endlicher) Santiañez & M.J.Wynne).This research was mainly supported by the projects Expeditions “SANTA MARIA and FORMIGAS/90” and “FORMIGAS/91” and lately by the project “ACORES-01-0145-FEDER-000072” funded the Operational Programme Azores 2020 (85% ERDF and 15% regional funds). Afonso Prestes was supported by a PhD grant (M3.1.a/F/083/2015) awarded by Fundo Regional da Ciência e Tecnologia (FRCT).info:eu-repo/semantics/publishedVersio

Probing the evolution of early-type cluster galaxies through chemical enrichment

A simple chemical enrichment model for cluster early-type galaxies is described in which the mechanisms considered in the evolutionary model are infall of primordial gas, outflows and a possible variation in the star formation efficiency. We find that - within the framework of our models - only outflows can generate a suitable range of metallicities. The chemical enrichment tracks can be combined with the latest population synthesis models to simulate clusters over a wide redshift range, for a set of toy models. The color-magnitude relation of local clusters is used as a constraint, fixing the correlation between absolute luminosity and ejected fraction of gas from outflows. It is found that the correlations between color or mass-to-light ratios and absolute luminosity are degenerate with respect to most of the input parameters. However, a significant change between monolithic and hierarchical models is predicted for redshifts z\simgt 1. The comparison between predicted and observed mass-to-light ratios yield an approximate linear bias between total and stellar masses: $M_{\rm Tot}\propto M_{\rm St}^{1.15\pm 0.08}$ in early-type galaxies. If we assume that outflows constitute the driving mechanism for the colors observed in cluster early type galaxies, the metallicity of the intracluster medium (ICM) can be linked to outflows. The color-magnitude constraint requires faint $M_V\sim -16$ galaxies to eject 85% of their gas, which means that most of the metals in the ICM may have originated in these dwarf galaxies.Comment: Accepted for publication in ApJ. Uses emulateapj.sty. 12 pages with 10 embedded EPS figure

Generalized Hartree-Fock Theory for Interacting Fermions in Lattices: Numerical Methods

We present numerical methods to solve the Generalized Hartree-Fock theory for fermionic systems in lattices, both in thermal equilibrium and out of equilibrium. Specifically, we show how to determine the covariance matrix corresponding to the Fermionic Gaussian state that optimally approximates the quantum state of the fermions. The methods apply to relatively large systems, since their complexity only scales quadratically with the number of lattice sites. Moreover, they are specially suited to describe inhomogenous systems, as those typically found in recent experiments with atoms in optical lattices, at least in the weak interaction regime. As a benchmark, we have applied them to the two-dimensional Hubbard model on a 10x10 lattice with and without an external confinement.Comment: 16 pages, 22 figure

Surface code quantum computing by lattice surgery

In recent years, surface codes have become a leading method for quantum error correction in theoretical large scale computational and communications architecture designs. Their comparatively high fault-tolerant thresholds and their natural 2-dimensional nearest neighbour (2DNN) structure make them an obvious choice for large scale designs in experimentally realistic systems. While fundamentally based on the toric code of Kitaev, there are many variants, two of which are the planar- and defect- based codes. Planar codes require fewer qubits to implement (for the same strength of error correction), but are restricted to encoding a single qubit of information. Interactions between encoded qubits are achieved via transversal operations, thus destroying the inherent 2DNN nature of the code. In this paper we introduce a new technique enabling the coupling of two planar codes without transversal operations, maintaining the 2DNN of the encoded computer. Our lattice surgery technique comprises splitting and merging planar code surfaces, and enables us to perform universal quantum computation (including magic state injection) while removing the need for braided logic in a strictly 2DNN design, and hence reduces the overall qubit resources for logic operations. Those resources are further reduced by the use of a rotated lattice for the planar encoding. We show how lattice surgery allows us to distribute encoded GHZ states in a more direct (and overhead friendly) manner, and how a demonstration of an encoded CNOT between two distance 3 logical states is possible with 53 physical qubits, half of that required in any other known construction in 2D.Comment: Published version. 29 pages, 18 figure

Realistic spectral function model for charged-current quasielastic-like neutrino and antineutrino scattering cross sections on 12C

A detailed study of charged current quasielastic neutrino and antineutrino scattering cross sections on a 12C target with no pions in the final state is presented. The initial nucleus is described by means of a realistic spectral function S(p, E) in which nucleon-nucleon correlations are implemented by using natural orbitals through the Jastrow method. The roles played by these correlations and by final-state interactions are analyzed and discussed. The model also includes the contribution of weak two-body currents in the two-particle two-hole sector, evaluated within a fully relativistic Fermi gas. The theoretical predictions are compared with a large set of experimental data for double-differential, single-differential, and total integrated cross sections measured by the MiniBooNE, MINERνA, and T2K experiments. Good agreement with experimental data is found over the whole range of neutrino energies. The results are also in global good agreement with the predictions of the superscaling approach, which is based on the analysis of electron-nucleus scattering data, with only a few differences seen at specific kinematics.This work was partially supported by the Bulgarian National Science Fund under Contracts No. DFNI-T02/19, No. DFNI-E02/6, and No. DNTS/Russia 01/3; by the Russian Foundation for Basic Research Grant No. 17-52-18057-bolga; by the Spanish Ministerio de Economia y Competitividad and ERDF (European Regional Development Fund) under Contracts No. FIS2014-59386-P, No. FIS2014-53448-C2- 1, No. FIS2017-88410-P, No. FIS2017-85053-C2-1-P, and No. FPA2015-65035-P; by the Junta de Andalucia (Grants No. FQM-225, FQM160); by the INFN under project MANYBODY; by the University of Turin under Contract No. BARMRILO- 17; and partly (T.W.D.) by the U.S. Department of Energy under cooperative agreement DE-FC02-94ER40818. G.D.M. acknowledges support from a Junta de Andalucia fellowship (FQM7632, Proyectos de Excelencia 2011). M.B.B. acknowledges support from the “Emilie du Châtelet” programme of the P2IO LabEx (ANR-10-LABX-0038)