A comparison of empirical and experimental O7+ , O8+ , and O/H values, with applications to terrestrial solar wind charge exchange

Solar wind charge exchange occurs at Earth between the neutral planetary exosphere and highly charged ions of the solar wind. The main challenge in predicting the resultant photon flux in the X‐ray energy bands is due to the interaction efficiency, known as the α value. This study produces experimental α values at the Earth, for oxygen emission in the range of 0.5–0.7 keV. Thirteen years of data from the Advanced Composition Explorer are examined, comparing O7+ and O8+ abundances, as well as O/H to other solar wind parameters allowing all parameters in the urn:x-wiley:grl:media:grl54692:grl54692-math-0001 calculation to be estimated based on solar wind velocity. Finally, a table is produced for a range of solar wind speeds giving average O7+ and O8+ abundances, O/H, and urn:x-wiley:grl:media:grl54692:grl54692-math-0002 values

Source‐to‐sink mass‐balance analysis of an ancient wave‐influenced sediment routing system: Middle Jurassic Brent Delta, Northern North Sea, offshore UK and Norway

Sediment mass-balance analysis provides key constraints on stratigraphic architecture and its controls. We use the data-rich Middle Jurassic Brent Delta sediment routing system in the proto-Viking Graben, Northern North Sea, to estimate sediment budgets and mass-balance between source areas and depositional sinks. Published studies are synthesised to provide an age-constrained sequence stratigraphic framework, consisting of four previously defined genetic sequences (J22, J24, J26, J32). Genetic sequence J32 (3.9 Myr) records transverse progradation of basin-margin deltas, sourced from the Shetland Platform to the west and Norwegian Landmass to the east. Genetic sequences J24 (1.1 Myr) and J26 (0.9 Myr) record the rapid progradation and subsequent aggradation of the Brent Delta along the basin axis, sourced from the uplifted Mid-North Sea High to the south, and the western and eastern source regions. Genetic sequence J32 (2.2 Myr) records the retreat of the Brent Delta. Sediment budgets for the four genetic sequences are estimated using palaeogeographical reconstructions, isopach maps, and sedimentological analysis of core and well-log data. The estimated net-depositional sediment budget for the mapped Brent Delta system is 2.0–2.8 Mt/year. Temporal variations in net-depositional sediment budget were driven by changes in tectonic boundary conditions, such as the onset of uplift before the deposition of genetic sequence J24. Over the same time period, the Shetland Platform, Norwegian Landmass and Mid-North Sea High source regions are estimated to have supplied 2.3–5.6, 5.0–14.1, and 2.8–9.4 Mt/year of sediment, respectively, using the BQART sediment load model and independent geometrical reconstruction of eroded volumes, which are constrained by isostatic uplift estimates based on the geochemistry of syn-depositional volcanic rocks. The net-depositional sediment budget in the sink is an order-of-magnitude smaller than the total sediment budget supplied by the source regions (13.9–23 Mt/year). This discrepancy suggests that along-shore transport by wave-generated currents into the coeval Faroe-Shetland Basin and/or down-dip transport by gravity flows into the coeval western Møre Basin played a key role in redistributing sediments away from the Brent Delta system

Modeling the magnetospheric X-ray emission from solar wind charge exchange with verification from XMM-Newton observations

An MHD‐based model of terrestrial solar wind charge exchange (SWCX) is created and compared to 19 case study observations in the 0.5–0.7 keV emission band taken from the European Photon Imaging Cameras on board XMM‐Newton. This model incorporates the Global Unified Magnetosphere‐Ionosphere Coupling Simulation‐4 MHD code and produces an X‐ray emission datacube from O7+ and O8+ emission lines around the Earth using in situ solar wind parameters as the model input. This study details the modeling process and shows that fixing the oxygen abundances to a constant value reduces the variance when comparing to the observations, at the cost of a small accuracy decrease in some cases. Using the ACE oxygen data returns a wide ranging accuracy, providing excellent correlation in a few cases and poor/anticorrelation in others. The sources of error for any user wishing to simulate terrestrial SWCX using an MHD model are described here and include mask position, hydrogen to oxygen ratio in the solar wind, and charge state abundances. A dawn‐dusk asymmetry is also found, similar to the results of empirical modeling. Using constant oxygen parameters, magnitudes approximately double that of the observed count rates are returned. A high accuracy is determined between the model and observations when comparing the count rate difference between enhanced SWCX and quiescent periods

Automated smoother for the numerical decoupling of dynamics models

<p>Abstract</p> <p>Background</p> <p>Structure identification of dynamic models for complex biological systems is the cornerstone of their reverse engineering. Biochemical Systems Theory (BST) offers a particularly convenient solution because its parameters are kinetic-order coefficients which directly identify the topology of the underlying network of processes. We have previously proposed a numerical decoupling procedure that allows the identification of multivariate dynamic models of complex biological processes. While described here within the context of BST, this procedure has a general applicability to signal extraction. Our original implementation relied on artificial neural networks (ANN), which caused slight, undesirable bias during the smoothing of the time courses. As an alternative, we propose here an adaptation of the Whittaker's smoother and demonstrate its role within a robust, fully automated structure identification procedure.</p> <p>Results</p> <p>In this report we propose a robust, fully automated solution for signal extraction from time series, which is the prerequisite for the efficient reverse engineering of biological systems models. The Whittaker's smoother is reformulated within the context of information theory and extended by the development of adaptive signal segmentation to account for heterogeneous noise structures. The resulting procedure can be used on arbitrary time series with a nonstationary noise process; it is illustrated here with metabolic profiles obtained from <it>in-vivo </it>NMR experiments. The smoothed solution that is free of parametric bias permits differentiation, which is crucial for the numerical decoupling of systems of differential equations.</p> <p>Conclusion</p> <p>The method is applicable in signal extraction from time series with nonstationary noise structure and can be applied in the numerical decoupling of system of differential equations into algebraic equations, and thus constitutes a rather general tool for the reverse engineering of mechanistic model descriptions from multivariate experimental time series.</p

Old lineage on an old island : Pixibinthus, a new cricket genus endemic to New Caledonia shed light on gryllid diversification in a hotspot of biodiversity

Few studies have focused on the early colonization of New Caledonia by insects, after the re-emergence of the main island, 37 Myr ago. Here we investigate the mode and tempo of evolution of a new endemic cricket genus, Pixibinthus, recently discovered in southern New Caledonia. First we formally describe this new monotypic genus found exclusively in the open shrubby vegetation on metalliferous soils, named 'maquis minier', unique to New Caledonia. We then reconstruct a dated molecular phylogeny based on five mitochondrial and four nuclear loci in order to establish relationships of Pixibinthus within Eneopterinae crickets. Pixibinthus is recovered as thesister clade of the endemic genus Agnotecous, mostly rainforest-dwellers. Dating results show that the island colonization by their common ancestor occurred around 34.7 Myr, shortly after New Caledonia re-emergence. Pixibinthus and Agnotecous are then one of the oldest insect lineages documented so far for New Caledonia. This discovery highlights for the first time two clear-cut ecological specializations between sister clades, as Agnotecous is mainly found in rainforests with 19 species, whereas Pixibinthus is found in open habitats with a single documented species. The preference of Pixibinthus for open habitats and of Agnotecous for forest habitats nicely fits an acoustic specialization, either explained by differences in body size or in acoustic properties of their respective habitats. We hypothesize that landscape dynamics, linked to major past climatic events and recent change in fire regimes are possible causes for both present-day low diversity and rarity in genus Pixibinthus. The unique evolutionary history of this old New Caledonian lineage stresses the importance to increase our knowledge on the faunal biodiversity of 'maquis minier', in order to better understand the origin and past dynamics of New Caledonian biota

Negative feedback regulation of the ERK1/2 MAPK pathway

The extracellular signal-regulated kinase 1/2 (ERK1/2) mitogen-activated protein kinase (MAPK) signalling pathway regulates many cellular functions, including proliferation, differentiation, and transformation. To reliably convert external stimuli into specific cellular responses and to adapt to environmental circumstances, the pathway must be integrated into the overall signalling activity of the cell. Multiple mechanisms have evolved to perform this role. In this review, we will focus on negative feedback mechanisms and examine how they shape ERK1/2 MAPK signalling. We will first discuss the extensive number of negative feedback loops targeting the different components of the ERK1/2 MAPK cascade, specifically the direct posttranslational modification of pathway components by downstream protein kinases and the induction of de novo gene synthesis of specific pathway inhibitors. We will then evaluate how negative feedback modulates the spatiotemporal signalling dynamics of the ERK1/2 pathway regarding signalling amplitude and duration as well as subcellular localisation. Aberrant ERK1/2 activation results in deregulated proliferation and malignant transformation in model systems and is commonly observed in human tumours. Inhibition of the ERK1/2 pathway thus represents an attractive target for the treatment of malignant tumours with increased ERK1/2 activity. We will, therefore, discuss the effect of ERK1/2 MAPK feedback regulation on cancer treatment and how it contributes to reduced clinical efficacy of therapeutic agents and the development of drug resistance