Soil Functions & Ecosystem Services

In order to fulfil RECARE’s aim to quantify in a harmonized, spatially explicit way impacts of degradation and conservation on soil functions and ecosystem services, it is important to understand the concept and review the current scientific debate. This will lay the foundation for the development and selection of appropriate methods to measure, evaluate, communicate and negotiate the services we obtain from soils with stakeholders in order to improve land management. Despite various research activities in the last decades across the world, many challenges remain to integrate the concept of ecosystem services (ES) in decision-making, and a coherent approach to assess and value ES is still lacking (de Groot et al., 2010). There are many different, often context-specific, ES frameworks with their own definitions and understanding of terms. This chapter therefore aims to identify the state of the art and knowledge gaps in order to develop an operational framework of the ES concept for the RECARE project. It will provide an overview on existing soil functions and ES frameworks and on approaches to monitor and value ES, with a special focus on soil aspects. Furthermore, it will address the question how the ES concept is operationalized in research projects and land management in Europe so far. Based on this review, the chapter concludes with a suggestion of an adapted ES framework for RECARE and on how to operationalize it for practical application in preventing and remediating degradation of soils in Europe

Soil Functions & Ecosystem Services

In order to fulfil RECARE’s aim to quantify in a harmonized, spatially explicit way impacts of degradation and conservation on soil functions and ecosystem services, it is important to understand the concept and review the current scientific debate. This will lay the foundation for the development and selection of appropriate methods to measure, evaluate, communicate and negotiate the services we obtain from soils with stakeholders in order to improve land management. Despite various research activities in the last decades across the world, many challenges remain to integrate the concept of ecosystem services (ES) in decision-making, and a coherent approach to assess and value ES is still lacking (de Groot et al., 2010). There are many different, often context-specific, ES frameworks with their own definitions and understanding of terms. This chapter therefore aims to identify the state of the art and knowledge gaps in order to develop an operational framework of the ES concept for the RECARE project. It will provide an overview on existing soil functions and ES frameworks and on approaches to monitor and value ES, with a special focus on soil aspects. Furthermore, it will address the question how the ES concept is operationalized in research projects and land management in Europe so far. Based on this review, the chapter concludes with a suggestion of an adapted ES framework for RECARE and on how to operationalize it for practical application in preventing and remediating degradation of soils in Europe

An applied methodology for stakeholder identification in transdisciplinary research

In this paper we present a novel methodology for identifying stakeholders for the purpose of engaging with them in transdisciplinary, sustainability research projects. In transdisciplinary research, it is important to identify a range of stakeholders prior to the problem-focussed stages of research. Early engagement with diverse stakeholders creates space for them to influence the research process, including problem definition, from the start. However, current stakeholder analysis approaches ignore this initial identification process, or position it within the subsequent content-focussed stages of research. Our methodology was designed as part of a research project into a range of soil threats in seventeen case study locations throughout Europe. Our methodology was designed to be systematic across all sites. It is based on a snowball sampling approach that can be implemented by researchers with no prior experience of stakeholder research, and without requiring significant financial or time resources. It therefore fosters transdisciplinarity by empowering physical scientists to identify stakeholders and understand their roles. We describe the design process and outcomes, and consider their applicability to other research projects. Our methodology therefore consists of a two-phase process of design and implementation of an identification questionnaire. By explicitly including a design phase into the process, it is possible to tailor our methodology to other research projects

Genome-wide identification of directed gene networks using large-scale population genomics data

Identification of causal drivers behind regulatory gene networks is crucial in understanding gene function. Here, we develop a method for the large-scale inference of gene–gene interactions in observational population genomics data that are both directed (using local genetic instruments as causal anchors, akin to Mendelian Randomization) and specific (by controlling for linkage disequilibrium and pleiotropy). Analysis of genotype and whole-blood RNA-sequencing data from 3072 individuals identified 49 genes as drivers of downstream transcriptional changes (Wald P < 7 × 10−10), among which transcription factors were overrepresented (Fisher’s P = 3.3 × 10−7). Our analysis suggests new gene functions and targets, including for SENP7 (zinc-finger genes involved in retroviral repression) and BCL2A1 (target genes possibly involved in auditory dysfunction). Our work highlights the utility of population genomics data in deriving directed gene expression networks. A resource of trans-effects for all 6600 genes with a genetic instrument can be explored individually using a web-based browser

Advances in understanding and managing catastrophic ecosystem shifts in Mediterranean ecosystems

One of the most challenging issues in Mediterranean ecosystems to date has been to understand the emergence of discontinuous changes or catastrophic shifts. In the era of the 2030 Sustainable Development Goals, which encompass ideas around Land Degradation Neutrality, advancing this understanding has become even more critical and urgent. The aim of this paper is to synthesize insights into the drivers, processes and management of catastrophic shifts to highlight ways forward for the management of Mediterranean ecosystems. We use a multidisciplinary approach that extends beyond the typical single site, single scale, single approach studies in the current literature. We link applied and theoretical ecology at multiple scales with analyses and modeling of human–environment–climate relations and stakeholder engagement in six field sites in Mediterranean ecosystems to address three key questions: i) How do major degradation drivers affect ecosystem functioning and services in Mediterranean ecosystems? ii) What processes happen in the soil and vegetation during a catastrophic shift? iii) How can management of vulnerable ecosystems be optimized using these findings? Drawing together the findings from the use of different approaches allows us to address the whole pipeline of changes from drivers through to action. We highlight ways to assess ecosystem vulnerability that can help to prevent ecosystem shifts to undesirable states; identify cost-effective management measures that align with the vision and plans of land users; and evaluate the timing of these measures to enable optimization of their application before thresholds are reached. Such a multidisciplinary approach enables improved identification of early warning signals for discontinuous changes informing more timely and cost-effective management, allowing anticipation of, adaptation to, or even prevention of, undesirable catastrophic ecosystem shifts.JRC.D.3-Land Resource

Advances in understanding and managing catastrophic shifts in Mediterranean ecosystems

One of the most challenging issues in Mediterranean ecosystems to date has been to understand the emergence of discontinuous changes or catastrophic shifts. In the era of the 2030 Sustainable Development Goals, which encompass ideas around Land Degradation Neutrality, advancing this understanding has become even more critical and urgent. The aim of this paper is to synthesise insights into the drivers, processes and management of catastrophic shifts to highlight ways forward for the management of Mediterranean ecosystems. We use a multidisciplinary approach that extends beyond the typical single site, single scale, single approach studies in the current literature. We link applied and theoretical ecology at multiple scales with analyses and modelling of human-environment-climate relations and stakeholder engagement in six field sites in Mediterranean ecosystems to address three key questions: i) How do major degradation drivers affect ecosystem functioning and services in Mediterranean ecosystems? ii) What processes happen in the soil and vegetation during a catastrophic shift? iii) How can management of vulnerable ecosystems be optimized using these findings? Drawing together the findings from the use of different approaches allows us to address the whole pipeline of changes from drivers through to action. We highlight ways to assess ecosystem vulnerability that can help to prevent ecosystem shifts to undesirable states; identify cost-effective management measures that align with the vision and plans of land users; and evaluate the timing of these measures to enable optimization of their application before thresholds are reached. Such a multidisciplinary approach enables improved identification of early warning signals for discontinuous changes informing more timely and cost-effective management, allowing anticipation of, adaptation to, or even prevention of, undesirable catastrophic ecosystem shifts

Advances in Understanding and Managing Catastrophic Ecosystem Shifts in Mediterranean Ecosystems

One of the most challenging issues in Mediterranean ecosystems to date has been to understand the emergence of discontinuous changes or catastrophic shifts. In the era of the 2030 Sustainable Development Goals, which encompass ideas around Land Degradation Neutrality, advancing this understanding has become even more critical and urgent. The aim of this paper is to synthesize insights into the drivers, processes and management of catastrophic shifts to highlight ways forward for the management of Mediterranean ecosystems. We use a multidisciplinary approach that extends beyond the typical single site, single scale, single approach studies in the current literature. We link applied and theoretical ecology at multiple scales with analyses and modeling of human–environment–climate relations and stakeholder engagement in six field sites in Mediterranean ecosystems to address three key questions: How do major degradation drivers affect ecosystem functioning and services in Mediterranean ecosystems? What processes happen in the soil and vegetation during a catastrophic shift? How can management of vulnerable ecosystems be optimized using these findings? Drawing together the findings from the use of different approaches allows us to address the whole pipeline of changes from drivers through to action. We highlight ways to assess ecosystem vulnerability that can help to prevent ecosystem shifts to undesirable states; identify cost-effective management measures that align with the vision and plans of land users; and evaluate the timing of these measures to enable optimization of their application before thresholds are reached. Such a multidisciplinary approach enables improved identification of early warning signals for discontinuous changes informing more timely and cost-effective management, allowing anticipation of, adaptation to, or even prevention of, undesirable catastrophic ecosystem shifts. © Copyright © 2020 van den Elsen, Stringer, De Ita, Hessel, Kéfi, Schneider, Bautista, Mayor, Baudena, Rietkerk, Valdecantos, Vallejo, Geeson, Brandt, Fleskens, Hemerik, Panagos, Valente, Keizer, Schwilch, Jucker Riva, Sietz, Christoforou, Hadjimitsis, Papoutsa, Quaranta, Salvia, Tsanis, Daliakopoulos, Claringbould and de Ruiter

Advances in Understanding and Managing Catastrophic Ecosystem Shifts in Mediterranean Ecosystems

One of the most challenging issues in Mediterranean ecosystems to date has been to understand the emergence of discontinuous changes or catastrophic shifts. In the era of the 2030 Sustainable Development Goals, which encompass ideas around Land Degradation Neutrality, advancing this understanding has become even more critical and urgent. The aim of this paper is to synthesize insights into the drivers, processes and management of catastrophic shifts to highlight ways forward for the management of Mediterranean ecosystems. We use a multidisciplinary approach that extends beyond the typical single site, single scale, single approach studies in the current literature. We link applied and theoretical ecology at multiple scales with analyses and modeling of human–environment–climate relations and stakeholder engagement in six field sites in Mediterranean ecosystems to address three key questions: How do major degradation drivers affect ecosystem functioning and services in Mediterranean ecosystems? What processes happen in the soil and vegetation during a catastrophic shift? How can management of vulnerable ecosystems be optimized using these findings? Drawing together the findings from the use of different approaches allows us to address the whole pipeline of changes from drivers through to action. We highlight ways to assess ecosystem vulnerability that can help to prevent ecosystem shifts to undesirable states; identify cost-effective management measures that align with the vision and plans of land users; and evaluate the timing of these measures to enable optimization of their application before thresholds are reached. Such a multidisciplinary approach enables improved identification of early warning signals for discontinuous changes informing more timely and cost-effective management, allowing anticipation of, adaptation to, or even prevention of, undesirable catastrophic ecosystem shifts

Mendelian randomization integrating GWAS and eQTL data reveals genetic determinants of complex and clinical traits

Genome-wide association studies (GWAS) have identified thousands of variants associated with complex traits, but their biological interpretation often remains unclear. Most of these variants overlap with expression QTLs, indicating their potential involvement in regulation of gene expression. Here, we propose a transcriptome-wide summary statistics-based Mendelian Randomization approach (TWMR) that uses multiple SNPs as instruments and multiple gene expression traits as exposures, simultaneously. Applied to 43 human phenotypes, it uncovers 3,913 putatively causal gene–trait associations, 36% of which have no genome-wide significant SNP nearby in previous GWAS. Using independent association summary statistics, we find that the maj