77 research outputs found
Learning from ‘apparent consensus’ in TAC disputes: Exploring knowledge overlaps in LEK and genetic categorization of Atlantic cod
Assessing the reproductive biology of the Greenland shark (Somniosus microcephalus)
The Greenland shark (Somniosus microcephalus, Squaliformes: Somniosidae) is a long-lived Arctic top predator, which in combination with the high historical and modern fishing pressures, has made it subject to increased scientific focus in recent years. Key aspects of reproduction are not well known as exemplified by sparse and contradictory information e.g. on birth size and number of pups per pregnancy. This study represents the first comprehensive work on Greenland shark reproductive biology based on data from 312 specimens collected over the past 60 years. We provide guidelines quantifying reproductive parameters to assess specific maturation stages, as well as calculate body length-at-maturity (TL50) which was 2.84±0.06 m for males and 4.19±0.04 m for females. From the available information on the ovarian fecundity of Greenland sharks as well as a meta-analysis of Squaliform reproductive parameters, we estimate up to 200–324 pups per pregnancy (depending on maternal size) with a body length-at-birth of 35–45 cm. These estimates remain to be verified by future observations from gravid Greenland sharks
Greenland Shark (<i>Somniosus microcephalus</i>) Stomach Contents and Stable Isotope Values Reveal an Ontogenetic Dietary Shift
Current knowledge on the feeding ecology of the Greenland shark (Somniosus microcephalus), a potential top predator in arctic marine ecosystems, is based on small sample sizes as well as narrow size ranges of sharks. Therefore, potential size-related feeding patterns remain poorly documented. Using stomach content data (N = 88) and stable isotope values of white muscle tissue (N = 40), this study evaluates the diet of sharks ranging in size from 81 to 474 cm (total length). The importance of prey categories (“Fish,” “Mammal,” “Squid,” “Crustacean,” and “Other”) was evaluated based on the reconstructed prey biomass of the stomach contents. Stable isotope values of δ13C and δ15N ranged between -14.4 to -19.9‰ and 11.8 to 17.2‰, respectively. The importance of each prey category was estimated by the Index of Relative Importance (IRI). Our findings suggest that the smallest Greenland sharks (200 cm) mainly feed on higher trophic level prey such as seals, epibenthic and benthic fishes including gadoids (Gadidae), skates (Rajidae), righteye flounders (Pleuronectidae), lumpfish (Cyclopteridae), wolffish (Anarhichadidae), and redfish (Sebastidae). Redfish were, however, only found to be important in the largest sharks sampled (>400 cm). In addition to demonstrating ontogenetic shifts in their feeding preferences, this study supports that Greenland sharks are capable of active predation on fast swimming seals and large fishes
Geographic extent of introgression in Sebastes mentella and its effect on genetic population structure
publishedVersio
A cold-water fish striving in a warming ocean: Insights from whole-genome sequencing of the Greenland halibut in the Northwest Atlantic
Characterizing the extent of genetic differentiation among individuals and its distribution across the genome is increasingly important to inform both conservation and management of exploited species. The Greenland Halibut is one of the main demersal fish species to be commercially exploited in Eastern Canada, and accurate information on geographic population structure and local adaptation is required to ensure the long-term presence of this species. We generated high-quality whole-genome sequencing data for 1,297 Greenland Halibut sampled across 32 locations throughout the Northwest Atlantic (from Arctic Canadian and Greenlandic coasts to the Gulf of St Lawrence). Population genetic structure was analyzed, revealing an absence of population differentiation between Canada and west Greenland but significant genetic differentiation between the Gulf of Saint Lawrence and the remainder of the Northwest Atlantic. Except for Gulf of Saint Lawrence, Greenland Halibut thus appear to be panmictic throughout the Northwest Atlantic. Environmental Association Analyses revealed that the environment explained up to 51 % might be replaced by 51% of the differentiation observed between the two stocks, with both ocean-bottom and surface variables (e.g., temperature and oxygen) involved in the observed genomic differentiation. Altogether, these results indicate that phenotypic differences previously observed between the Gulf of Saint Lawrence and the Northwest Atlantic likely resulted from functional adaptive divergence to their respective environmental conditions. Using coalescent simulations, we also assessed how high levels of migration between the two stocks would allow Greenland Halibut to potentially escape unfavorable environmental conditions in the Gulf of Saint Lawrence. In addition to supporting the management of this important exploited species, this work highlights the utility of using comprehensive genomic datasets to characterize the effects of climate change across a wider range of species
Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua
Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts
Validation of pop-up satellite archival tags (PSATs) on Atlantic cod (Gadus morhua) in a Greenland fjord
Traditional tagging techniques are simple and cost-effective, but inferences require recaptures and data on movement/migration are limited to a start and end position at unpredictable intervals. Pop-up satellite archival tags (PSATs) offer other opportunities, as they provide positions at pre-programmed times and collect on-route data, which can be used to describe position, behavior, and habitat preferences. Species suitability should, however, be documented prior to large-scale studies using PSATs. We deployed PSATs on six relatively large (total length 84–125 cm) Atlantic cod (Gadus morhua) in inshore West Greenland waters. Three tags were physically recovered, providing high-resolution data on depth and temperature (readings every 3 s), while three tags did not report (recovery rate = 50 %). To evaluate the tag’s applicability on Atlantic cod, we made a detailed behavioral analysis by defining swimming behavior, occupied water types and depth phases, which were cross-evaluated in relation to depth, temperature and water stratification to identify behavioral patterns. Distinct and shared patterns in swimming behavior were evident and we found no signs of impaired swimming behavior except for an adaptation period lasting up to 39 h after release. Generally, the three cod were pelagic and preferred waters ranging 2–5 °C. When encountering colder water masses these were avoided. During late summer/early autumn, increased vertical activity could in some cases be linked to darkness and a high-activity event could be linked to possible predator avoidance. All combined, we conclude that PSATs are suitable to monitor natural behavior on large specimens of Atlantic cod for periods of at least four months.publishedVersio
Archived DNA reveals fisheries and climate induced collapse of a major fishery
Fishing and climate change impact the demography of marine fishes, but it is generally ignored that many species are made up of genetically distinct locally adapted populations that may show idiosyncratic responses to environmental and anthropogenic pressures. Here, we track 80 years of Atlantic cod (Gadus morhua) population dynamics in West Greenland using DNA from archived otoliths in combination with fish population and niche based modeling. We document how the interacting effects of climate change and high fishing pressure lead to dramatic spatiotemporal changes in the proportions and abundance of different genetic populations, and eventually drove the cod fishery to a collapse in the early 1970s. Our results highlight the relevance of fisheries management at the level of genetic populations under future scenarios of climate change
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