Comparing observed and modelled growth of larval herring (Clupea harengus): Testing individual-based model parameterisations

Experiments that directly test larval fish individual-based model (IBM) growth predictions are uncommon since it is difficult to simultaneously measure all relevant metabolic and behavioural attributes. We compared observed and modelled somatic growth of larval herring (Clupea harengus) in short-term (50 degree-day) laboratory trials conducted at 7 and 13°C in which larvae were either unfed or fed ad libitum on different prey sizes (~100 to 550 μm copepods, Acartia tonsa). The larval specific growth rate (SGR, % DW d-1) was generally overestimated by the model, especially for larvae foraging on large prey items. Model parameterisations were adjusted to explore the effect of 1) temporal variability in foraging of individuals, and 2) reduced assimilation efficiency due to rapid gut evacuation at high feeding rates. With these adjustments, the model described larval growth well across temperatures, prey sizes, and larval sizes. Although the experiments performed verified the growth model, variability in growth and foraging behaviour among larvae shows that it is necessary to measure both the physiology and feeding behaviour of the same individual. This is a challenge for experimentalists but will ultimately yield the most valuable data to adequately model environmental impacts on the survival and growth of marine fish early life stages. Comparación entre crecimiento observado y predicho de larvas de arenque (Clupea harengus): analizando parametrizaciones de modelos basados en individuos. – Los experimentos que analizan directamente las predicciones de crecimiento generadas por modelos basados en individuos (IBM) son poco comunes puesto que resulta difícil medir simultáneamente todos los atributos metabólicos y conductuales. En este estudio, comparamos el crecimiento somático observado y el estimado a partir de modelos de larvas de arenque (Clupea harengus) en experimentos de laboratorio a corto plazo (50 grados-día) a 7 y 13°en los que las larvas fueron mantenidas en condiciones de ayuno o recibieron alimentación ad libitum con diferentes tamaños de presa (copépodos, Acartia tonsa, de aproximadamente 100 a 500 μm). Las estimas de tasa específica de crecimiento (SGR, % de peso seco por día) fueron, en general, sobreestimadas por el modelo, especialmente para larvas que se alimentaron con presas grandes. estimas del modelo se ajustaron a dos escenarios para explorar el efecto de 1) variabilidad temporal en la alimentación de las larvas, y 2) disminución en la eficiencia de asimilación debida una rápida evacuación del tubo digestivo a tasas de alimentación altas. Con estos ajustes, el modelo describió bien el crecimiento larvario para temperaturas, tamaños de presa y edades de las larvas, indicando que las parametrizaciones metabólicas son robustas. Aunque los experimentos llevados a cabo con grupos de larvas verificaron los modelos de crecimiento, la variabilidad en el crecimiento y conducta de alimentación entre larvas sometidas a las mismas condiciones ambientales ponen de relieve la necesidad de que las medidas fisiológicas y de conducta vayan emparejadas y sean tomadas a nivel individual. Esto representa un reto para los experimentalistas, pero a largo plazo generará datos valiosos para los modeladores encargados de simular efectos ambientales sobre las tasas vitales de estadíos tempranos de desarrollo de peces marinos

Dissolved N:P ratio changes in the eastern tropical North Atlantic: effect on phytoplankton growth and community structure

Previous bioassays conducted in the oligotrophic Atlantic Ocean identified availability of inorganic nitrogen (N) as the proximate limiting nutrient control of primary production, but additionally displayed a synergistic growth effect of combined N and phosphorus (P) addition. To classify conditions of nutrient limitation of coastal phytoplankton in the tropical ocean, we performed an 11 d nutrient-enrichment experiment with a natural phytoplankton community from shelf waters off northwest Africa in shipboard mesocosms. We used pigment and gene fingerprinting in combination with flow cytometry for classification and quantification of the taxon-specific photoautotrophic response to differences in nutrient supply. The developing primary bloom was dominated by diatoms and was significantly higher in the treatments receiving initial N addition. The combined supply of N and P did not induce a further increase in phytoplankton abundance compared to high N addition alone. A secondary bloom during the course of the experiment again displayed higher primary producer standing stock in the N-fertilized treatments. Bacterial abundance correlated positively with phytoplankton biomass. Dominance of the photoautotrophic assemblage by N-limited diatoms in conjunction with a probable absence of any P-limited phytoplankton species prevented an additive effect of combined N and P addition on total phytoplankton biomass. Furthermore, after nutrient exhaustion, dinitrogen (N-2)-fixing cyanobacteria succeeded the bloom-forming diatoms. Shelf waters in the tropical eastern Atlantic may thus support growth of diazotrophic cyanobacteria such as Trichodesmium sp. subsequent to upwelling pulses

Photon creation from vacuum and interactions engineering in nonstationary circuit QED

We study theoretically the nonstationary circuit QED system in which the artificial atom transition frequency, or the atom-cavity coupling, have a small periodic time modulation, prescribed externally. The system formed by the atom coupled to a single cavity mode is described by the Rabi Hamiltonian. We show that, in the dispersive regime, when the modulation periodicity is tuned to the `resonances', the system dynamics presents the dynamical Casimir effect, resonant Jaynes-Cummings or resonant Anti-Jaynes-Cummings behaviors, and it can be described by the corresponding effective Hamiltonians. In the resonant atom-cavity regime and under the resonant modulation, the dynamics is similar to the one occurring for a stationary two-level atom in a vibrating cavity, and an entangled state with two photons can be created from vacuum. Moreover, we consider the situation in which the atom-cavity coupling, the atomic frequency, or both have a small nonperiodic time modulation, and show that photons can be created from vacuum in the dispersive regime. Therefore, an analog of the dynamical Casimir effect can be simulated in circuit QED, and several photons, as well as entangled states, can be generated from vacuum due to the anti-rotating term in the Rabi Hamiltonian.Comment: 14 pages, 6 figures. Talk presented at the International Workshop "60 Years of Casimir Effect", 23 - 27 June, 2008, Brasili

Hidden biosphere in an oxygen-deficient Atlantic open ocean eddy: future implications of ocean deoxygenation on primary production in the eastern tropical North Atlantic

The eastern tropical North Atlantic (ETNA) is characterized by a highly productive coastal upwelling system and a moderate oxygen minimum zone with lowest open ocean oxygen (O2) concentrations of around 40 μmol kg−1. Only recently, the discovery of re-occurring mesoscale eddies with sometimes close to anoxic O2 concentrations (<1 μmol kg−1) and located just below the mixed layer challenged our understanding of O2 distribution and biogeochemical processes in this area. Here, we present the first metagenomic dataset from a deoxygenated anticyclonic modewater eddy in the open waters of the ETNA. In the eddy, we observed a significantly lower bacterial diversity compared to surrounding waters, along with a significant community shift. We detected enhanced primary productivity in the surface layer of the eddy indicated by elevated chlorophyll concentrations and increased carbon uptake rates up to three times as high as in surrounding waters. Carbon uptake below the euphotic zone correlated to the presence of a specific high-light ecotype of Prochlorococcus, which is usually underrepresented in the ETNA. Our combined data indicate that high primary production in the eddy fuels export production and the presence of a specific microbial community responsible for enhanced respiration at shallow depths, below the mixed layer base. Progressively decreasing O2 concentrations in the eddy were found to promote transcription of the key gene for denitrification, nirS, in the O2-depleted core waters. This process is usually absent from the open ETNA waters. In the light of future ocean deoxygenation our results show exemplarily that even distinct events of anoxia have the potential to alter microbial community structures and with that critically impact primary productivity and biogeochemical processes of oceanic water bodies

On the interplay of waveguide modes and leaky modes in corrugated OLEDs

Bragg gratings incorporated into organic light-emitting diodes (OLEDs) establish a coupling between waveguide modes and useful light (leaky modes). Here we demonstrate that the net coupling direction depends on the OLED stack design. We fabricated two different device structures with gold Bragg gratings. Angle resolved electroluminescence spectra were recorded. For the first device peaks of enhanced emission due to the Bragg grating are observed corresponding to a net energy transfer in direction of the leaky modes. The second device, on the other hand, exhibits dips in the emission spectrum. This reversed direction of energy transfer from the leaky modes to the waveguide modes is explained considering transfer matrix simulations of modal intensity distributions and device emission simulations. An OLED efficiency enhancement is only achieved, if the waveguide mode extraction is dominant

Small sinking particles control anammox rates in the Peruvian oxygen minimum zone

Anaerobic oxidation of ammonium (anammox) in oxygen minimum zones (OMZs) is a major pathway of oceanic nitrogen loss. Ammonium released from sinking particles has been suggested to fuel this process. During cruises to the Peruvian OMZ in April–June 2017 we found that anammox rates are strongly correlated with the volume of small particles (128–512 µm), even though anammox bacteria were not directly associated with particles. This suggests that the relationship between anammox rates and particles is related to the ammonium released from particles by remineralization. To investigate this, ammonium release from particles was modelled and theoretical encounters of free-living anammox bacteria with ammonium in the particle boundary layer were calculated. These results indicated that small sinking particles could be responsible for ~75% of ammonium release in anoxic waters and that free-living anammox bacteria frequently encounter ammonium in the vicinity of smaller particles. This indicates a so far underestimated role of abundant, slow-sinking small particles in controlling oceanic nutrient budgets, and furthermore implies that observations of the volume of small particles could be used to estimate N-loss across large areas

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein

Sisyphus cooling and amplification by a superconducting qubit

Laser cooling of the atomic motion paved the way for remarkable achievements in the fields of quantum optics and atomic physics, including Bose-Einstein condensation and the trapping of atoms in optical lattices. More recently superconducting qubits were shown to act as artificial two-level atoms, displaying Rabi oscillations, Ramsey fringes, and further quantum effects. Coupling such qubits to resonators brought the superconducting circuits into the realm of quantum electrodynamics (circuit QED). It opened the perspective to use superconducting qubits as micro-coolers or to create a population inversion in the qubit to induce lasing behavior of the resonator. Furthering these analogies between quantum optical and superconducting systems we demonstrate here Sisyphus cooling of a low frequency LC oscillator coupled to a near-resonantly driven superconducting qubit. In the quantum optics setup the mechanical degrees of freedom of an atom are cooled by laser driving the atom's electronic degrees of freedom. Here the roles of the two degrees of freedom are played by the LC circuit and the qubit's levels, respectively. We also demonstrate the counterpart of the Sisyphus cooling, namely Sisyphus amplification. Parallel to the experimental demonstration we analyze the system theoretically and find quantitative agreement, which supports the interpretation and allows us to estimate system parameters.Comment: 7 pages, 4 figure

Synthesis, structural characterization, antimicrobial and cytotoxic effects of aziridine, 2-aminoethylaziridine and azirine complexes of copper(II) and palladium(II).

The synthesis, spectroscopic and X-ray structural characterization of copper(II) and palladium(II) complexes with aziridine ligands as 2-dimethylaziridine HNCH2CMe2 (a), the bidentate N-(2-aminoethyl)aziridines C2H4NC2H4NH2 (b) or CH2CMe2NCH2CMe2NH2 (c) as well as the unsaturated azirine NCH2CPh (d) are reported. Cleavage of the cyclometallated Pd(II) dimer [μ-Cl(C6H4CHMeNMe2-C,N)Pd]2 with ligand a yielded compound [Cl(NHCH2CMe2)(C6H4CHMe2NMe2-C,N)Pd] (1a). The reaction of the aziridine complex trans-[Cl2Pd(HNC2H4)2] with an excess of aziridine in the presence of AgOTf gave the ionic chelate complex trans-[(C2H4NC2H4NH2-N,N′)2Pd](OTf)2 (2b) which contains the new ligand b formed by an unexpected insertion and ring opening reaction of two aziridines (“aziridine dimerization”). CuCl2 reacted in pure HNC2H4 or HNCH2CMe2 (b) again by “dimerization” to give the tris-chelated ionic complex [Cu(C2H4NC2H4NH2-N,N′)3]Cl2 (3b) or the bis-chelated complex [CuCl(C2H2Me2NC2H2Me2NH2-N,N′)2]Cl (4c). By addition of 2H-3-phenylazirine (d) to PdCl2, trans-[Cl2Pd(NCH2CPh)2] (5d) was formed. All new compounds were characterized by NMR, IR and mass spectra and also by X-ray structure analyses (except 3b). Additionally the cytotoxic effects of these complexes were examined on HL-60 and NALM-6 human leukemia cells and melanoma WM-115 cells. The antimicrobial activity was also determined. The growth of Gram-positive bacterial strains (S. aureus, S. epidermidis, E. faecalis) was inhibited by almost all tested complexes at the concentrations of 37.5–300.0 μg mL−1. However, MIC values of complexes obtained for Gram-negative E. coli and P. aeruginosa, as well as for C. albicans yeast, mostly exceeded 300 μg mL−1. The highest antibacterial activity was achieved by complexes 1a and 2b. Complex 2b also inhibited the growth of Gram-negative bacteria. Graphical abstract: Synthesis, structural characterization, antimicrobial and cytotoxic effects of aziridine, 2-aminoethylaziridine and azirine complexes of copper(ii) and palladium(ii