Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss)

The sea-run phenotype of rainbow trout (Oncorhynchus mykiss), like other anadromous salmonids, present a juvenile stage fully adapted to life in freshwater known as parr. Development in freshwater is followed by the smolt stage, where preadaptations needed for seawater life are developed making fish ready to migrate to the ocean, after which event they become post-smolts. While these three life stages have been studied using a variety of approaches, proteomics has never been used for such purpose. The present study characterised the blood plasma proteome of parr, smolt and post-smolt rainbow trout using a gel electrophoresis liquid chromatography tandem mass spectrometry approach alone or in combination with low-abundant protein enrichment technology (combinatorial peptide ligand library). In total, 1,822 proteins were quantified, 17.95% of them being detected only in plasma post enrichment. Across all life stages, the most abundant proteins were ankyrin-2, DNA primase large subunit, actin, serum albumin, apolipoproteins, hemoglobin subunits, hemopexin-like proteins and complement C3. When comparing the different life stages, 17 proteins involved in mechanisms to cope with hyperosmotic stress and retinal changes, as well as the downregulation of nonessential processes in smolts, were significantly different between parr and smolt samples. On the other hand, 11 proteins related to increased growth in post-smolts, and also related to coping with hyperosmotic stress and to retinal changes, were significantly different between smolt and post-smolt samples. Overall, this study presents a series of proteins with the potential to complement current seawater-readiness assessment tests in rainbow trout, which can be measured non-lethally in an easily accessible biofluid. Furthermore, this study represents a first in-depth characterisation of the rainbow trout blood plasma proteome, having considered three life stages of the fish and used both fractionation alone or in combination with enrichment methods to increase protein detection

Investigation of growth performance of post-smolt Atlantic salmon (Salmo salar L.) in semi closed containment system: A big-scale benchmark study

The Norwegian salmon industry faces challenges related to sea lice (Lepeophtheirus salmonis) infestations, escapees, diseases and environmental impact. Semi-closed containment systems (S-CCS) have been proposed to abate these challenges. In the S-CCS, cultured fish are separated from the natural environment by a physical barrier, reducing the time fish spend in open sea cages. Production data from six cohorts of salmon were used to compare growth and performance of fish raised in S-CCS and in open sea cages (control group) incorporating different seasons. The study was carried out in two phases. Phase one used post-smolts from approximately 100 to 800 g in seawater, and fish in S-CCS were compared with a reference group from an open sea cage. The second, grow-out phase covered the size range from approximately 800 to 5000 g in open sea cages; here fish previously reared in S-CCS were compared with fish from a control group. The study showed a significantly lower infestation of sea lice in S-CCS (0.02–0.04) fish compared with the control group (0.18–0.62) during the post-smolt phase. Furthermore, in the grow-out phase the S-CCS group showed higher growth rate and higher final weight (4680 g [spring], 4890 g [fall]) for the S-CCS group compared with the control group (3800 g [spring] and 4080 g [fall]). Salmon raised in S-CCS showed significantly higher survival compared with the control group in open pens, indicating increased resilience in fish raised in S-CCS when transferred to open net pens in sea. It is concluded that S-CCS have advantages compared with exposure to the natural environment in open pens in western Norway.publishedVersio

Application of polychaetes in (de)coupled integrated aquaculture: an approach for fish waste bioremediation

ABSTRACT: Development of benthic components within integrated multi-trophic aquaculture (IMTA) systems warrants more attention, and the development of polychaetes as an extractive component in IMTA systems is ongoing. This study estimates the bioremediation potential of Capitella sp. and Ophryotrocha craigsmithi for coupled and decoupled salmon-driven IMTA. In coupled IMTA, polychaetes receive fresh faeces, while in decoupled IMTA, preservation of faeces is applied. Respiration and ammonia excretion rates were measured for polychaetes fed fresh, oven-dried or acidified salmon faeces, and combined with nutrients incorporated into tissue growth, to estimate nutrient requirements. Nutrient requirements were subsequently used to evaluate bioremediation potential. Metabolic rates were highest for O. craigsmithi and contributed notably to their overall nutrient requirement (20-30%). For the 2 polychaete species, nutrient requirements ranged from 5 to 26 mg C and from 2 to 6 mg N g-1 AFDW d-1. These requirements were comparable with or higher than other polychaete species, highlighting the potential for fish waste bioremediation by Capitella sp. and O. craigsmithi. Preserved diets reduced bioremediation potential 1.5 and 3-5 times for, respectively, Capitella sp. and O. craigsmithi. Assuming that polychaetes are efficient fish-faeces convertors, the bioremediation potential indicates that benthic cultivation units containing 65000-95000 ind. m-2 of Capitella sp. or 36000-194000 ind. m-2 of O. craigsmithi can convert the daily organic waste flux deposited below an average salmon farm. These densities were within ranges reported for wild populations, indicating that, based on the bioremediation potential, development of benthic IMTA with these 2 polychaete species seems realistic and efficient for waste conversion.publishedVersio

Five salmon dinners per week were not sufficient to prevent the reduction in serum vitamin D in autumn at 60° north latitude: A randomised trial

Low serum concentrations of several vitamins have been linked to increased risk of diseases including insulin resistance and type 2 diabetes (T2D). Fish is a good source of several vitamins, and the prevalence of T2D is low in populations with high fish intake. The aim of the present study was to investigate the effects of high fish intake on vitamins in serum from adults in autumn in South-Western Norway at 60° north latitude. In this randomised clinical trial, sixty-three healthy participants with overweight/obesity consumed 750 g/week of either cod (n 22) or salmon (n 22) as five weekly dinners or were instructed to continue their normal eating habits but avoid fish intake (Control group, n 19) for 8 weeks. The estimated vitamin D intake was significantly increased in the Salmon group when compared with the Cod group (P = 6·3 × 10−4) and with the Control group (P = 3·5 × 10−6), with no differences between groups for estimated intake of vitamins A, B1, B2, B3, B6, B9, C and E. Serum 25-hydroxyvitamin D3 concentration was decreased in all groups after 8 weeks; however, the reduction in the Salmon group was significantly smaller compared with the Cod group (P = 0·013) and the Control group (P = 0·0060). Cod and salmon intake did not affect serum concentrations of the other measured vitamins. The findings suggest that 750 g/week of salmon was not sufficient to prevent a decrease in serum 25-hydroxyvitamin D3 in autumn in South-Western Norway in adults with overweight/obesity.publishedVersio

Effects of different photoperiod regimes on the smoltification and seawater adaptation of seawater-farmed rainbow trout (Oncorhynchus mykiss): Insights from Na+, K+-ATPase activity and transcription of osmoregulation and growth regulation genes

Photoperiod is thought to be the main zeitgeber that induces smoltification in salmonids. However, its effects on the smoltification of rainbow trout (Oncorhynchus mykiss) are not fully understood and no published data documents the effects of the photoperiod regime currently used commercially, continuous light (LL). The present study compared the effect of four different photoperiod regimes (i.e. advanced phase photoperiod (APP), delayed phase photoperiod (DPP), LL and simulated natural photoperiod (SNP)) on the smoltification and growth of juvenile rainbow trout during their freshwater phase of winter-spring and the following summer post smolt phase. Smoltification was evaluated by monitoring gill Na+,K+–ATPase (NKA) activity and transcription of NKA α-subunit isoforms 1a and 1b, and Na+,K+,2Cl− cotransporter 1a. Growth was measured as specific growth rate of both length and weight, and through molecular growth proxies such as the levels of circulating insulin-like growth factor 1 (IGF-I) in plasma and transcription of igf-I, igf binding protein 1b (igfbp1b), growth hormone receptor 1 (ghr1) and cathepsin L (ctsl) in the liver. Results indicate that APP induces a longer smolt window and higher levels of plasma IGF-I in both freshwater and seawater (two months post transfer), while DPP led to a shorter smolt window, lower plasma IGF-I levels in freshwater and seawater, an earlier decrease in liver igf-I and ctsl transcription in freshwater (as seen by modelling over time) and lower specific growth rate in freshwater. The transcription analysis of osmoregulatory genes complemented NKA activity and allowed for the detection of a transient response to light and of differences between the osmoregulatory capacity of parr and desmolted fish. Furthermore, an upregulation of the liver transcription of igf-I, ghr1 and ctsl was found in all treatments during the smolt window, which corresponded to the periods with highest growth. Finally, both plasma IGF-I and liver igf-I in seawater were found to be significantly correlated to fish growth in seawater. However, our data did not show that plasma IGF-I prior to seawater transfer could be used as a reliable predictor of growth in seawater. Overall, and especially when compared with other salmonid species, photoperiod seems to be a weaker inducer of smoltification in rainbow trout, according to the parameters that were tested, suggesting that other environmental cues might be more important drivers of this process

Effects of high intake of cod or salmon on gut microbiota profile, faecal output and serum concentrations of lipids and bile acids in overweight adults: a randomised clinical trial

Purpose To explore whether high intake of cod or salmon would affect gut microbiota profile, faecal output and serum concentrations of lipids and bile acids. Methods Seventy-six adults with overweight/obesity with no reported gastrointestinal disease were randomly assigned to consume 750 g/week of either cod or salmon, or to avoid fish intake (Control group) for 8 weeks. Fifteen participants from each group were randomly selected for 72 h faeces collection at baseline and end point for gut microbiota profile analyses using 54 bacterial DNA probes. Food intake was registered, and fasting serum and morning urine were collected at baseline and end point. Results Sixty-five participants were included in serum and urine analyses, and gut microbiota profile was analysed for 33 participants. Principal component analysis of gut microbiota showed an almost complete separation of the Salmon group from the Control group, with lower counts for bacteria in the Bacteroidetes phylum and the Clostridiales order of the Firmicutes phyla, and higher counts for bacteria in the Selenomonadales order of the Firmicutes phylum. The Cod group showed greater similarity to the Salmon group than to the Control group. Intake of fibres, proteins, fats and carbohydrates, faecal daily mass and output of fat, cholesterol and total bile acids, and serum concentrations of cholesterol, triacylglycerols, non-esterified fatty acids and total bile acids were not altered in the experimental groups. Conclusion A high intake of cod or salmon fillet modulated gut microbiota but did not affect faecal output or serum concentrations of lipids and total bile acids. Clinical trial registration This trial was registered at clinicaltrials.gov as NCT02350595.publishedVersio

Photoreception and transcriptomic response to light during early development of a teleost with a life cycle tightly controlled by seasonal changes in photoperiod

Light cues vary along the axis of periodicity, intensity and spectrum and perception of light is dependent on the photoreceptive capacity encoded within the genome and the opsins expressed. A global approach was taken to analyze the photoreceptive capacity and the effect of differing light conditions on a developing teleost prior to first feeding. The transcriptomes of embryos and alevins of Atlantic salmon (Salmo salar) exposed to different light conditions were analyzed, including a developmental series and a circadian profile. The results showed that genes mediating nonvisual photoreception are present prior to hatching when the retina is poorly differentiated. The clock genes were expressed early, but the circadian profile showed that only two clock genes were significantly cycling before first feeding. Few genes were differentially expressed between day and night within a light condition; however, many genes were significantly different between light conditions, indicating that light environment has an impact on the transcriptome during early development. Comparing the transcriptome data from constant conditions to periodicity of white light or different colors revealed overrepresentation of genes related to photoreception, eye development, muscle contraction, degradation of metabolites and cell cycle among others, and in constant light, several clock genes were upregulated. In constant white light and periodicity of green light, genes associated with DNA replication, chromatin remodeling, cell division and DNA repair were downregulated. The study implies a direct influence of light conditions on the transcriptome profile at early developmental stages, by a complex photoreceptive system where few clock genes are cycling.publishedVersio

Effects of temperature and photoperiod on rainbow trout (Oncorhynchus mykiss) smoltification and haematopoiesis

First paragraph: Most freshwater fish would not be able to cope with the osmotic stress intrinsic to seawater, quickly dehydrating and dying, and so are bound to freshwater ecosystems (Quinn et al., 2016). However, anadromous salmonids have developed a strategy to minimize osmotic counter effects, thus allowing them to live in both freshwater, ideal for safe spawning, hatching and early growth stages, and seawater environments, rich in energy resources for fast growth (Hendry et al., 2004; Lima and Dill, 1990)

ANALISIS KEMAMPUAN BERFIKIR ALJABAR DI KELAS VII SMP NEGERI 1 KRANGKENG KABUPATEN INDRAMAYU (Studi Survei di Kelas VII Tahun Akademik 2012/2013)

Setiati Rahayu, 2013. Analisis Kemampuan Berfikir Aljabar di Kelas VII di SMP Negeri 1 Krangkeng Kab. Indramayu (Studi Survei di Kelas VII Tahun Akademik 2012/2013) Untuk mengukur kemampuan berfikir aljabar seorang siswa diperlukan beberapa indikator. Terdapat beberapa indikator untuk memahami aljabar diantaranya memahami pengertian koefisien variabel suku sejenis, kemampuan melakuakan operasi hitung, kemampuan mengggunakan simbol matematika, kemampuan menggunakan bahasa sehari-hari, kemampuan menyederhanakan operasi aljabar, kemampuan menyatakan berbagai hubungan, kemampuan menggunakan diagram alur dan memahami konsep aljabar invers. Tujuan dalam penelitian ini untuk menganalisis kemampuan berfikir aljabar di kelas VII yang ditinjau dari operasi aljabar, penggunaan aljabar, masalah aljabar, dan pemahaman konsep aljabar saat menjawab soal-soal aljabar. Kemampuan siswa dalam memahami aljabar merupakan suatu kondisi yang terdapat dalam sekolah SMP tersebut. Aljabar adalah suatu cabang ilmu matematika yang menggunakan tandatanda dan huruf-huruf yang mewakili angka-angka. Banyaknya indikator yang menjadi indikator kemampuan aljabar, maka akan ada beberapa indikator yang akan menjadi komponen utama dalam kemampuan aljabar. Untuk mengetahui kemampuan siswa dalam memahami aljabar, tidak perlu semua indikator pada\ud materi aljabar diujikan dalam tes. Mengetahui sangat pentingnya komponen utama dalam materi aljabar untuk mengukur kemampuan berfikir aljabar seorang siswa maka peneliti mencoba menganalisis kemampuan berfikir aljabar siswa kelas VII di SMPN 1 Krangkeng. Teknik pengumpulan data yang digunakan dalam penelitian ini adalah tes. Populasi dalam penelitian ini adalah Kelas VII yang berjumlah (160 siswa). Sampel diambil dari kelas VIIB cluster random sampling. Untuk uji coba dilakukan di kelas VIIA yang berjumlah 32. Dari hasil penelitian diperoleh hasil sebagai berikut: 1) Aljabar di SMP N 1 Krangkeng cukup baik hal ini ditunjukan dengan nilai rata-rata 75. 2) Indikator kemampuan berfikir aljabar secara mekanisme dan indikator Kemampuan terbesar yang dicapai oleh siswa kelas VII SMP Negeri 1 Krangkeng tahun ajaran 2012/2013 dalam memahami aljabar adalah pada pengertian koefisien, variabel, konstanta, faktor, suku sejenis adalah sebesar 89.58% dan kemampuan yang kurang dikuasai oleh siswa kelas VII SMP Negeri 1 Krangkeng tahun ajaran 2012/2013 dalam memahami aljabar adalah memahami invers adalah sebesar 85.94%. 3) Dari delapan indicator kemampuan berfikir aljabar ada tiga komponen yang dominan yaitu menggunakan diagram alur, pengertian koefisien variable konstanta, faktor suku sejenis, dan menyederhanakan operasi aljaba