Genome sequence and analysis of the tuber crop potato

Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital cro

Neutral Higgs sector of the next-to-minimal supersymmetric standard model with explicit CP violation

The neutral Higgs sector of the next-to-minimal supersymmetric standard model (NMSSM) with explicit CP violation is investigated at the 1-loop level, using the effective potential method; not only the loops involving the third generation of quarks and scalar quarks, but also the loops involving $W$ boson, charged Higgs boson, and chargino are taken into account. It is found that for some parameter values of the NMSSM the contributions from the $W$ boson, charged Higgs boson, and chargino loops may modify the masses of the neutral Higgs bosons and the mixings among them significantly, depending on the CP phase. In $e^+e^-$ collisions, the prospects for discovering neutral Higgs bosons are investigated within the context of the NMSSM with explicit CP violation when the dominant component of the lightest neutral Higgs boson is the Higgs singlet field of the NMSSM.Comment: Latex, 23 pages, 6 figure

Neutral Higgs bosons in the MNMSSM with explicit CP violation

Within the framework of the minimal non-minimal supersymmetric standard model (MNMSSM) with tadpole terms, CP violation effects in the Higgs sector are investigated at the one-loop level, where the radiative corrections from the loops of the quark and squarks of the third generation are taken into account. Assuming that the squark masses are not degenerate, the radiative corrections due to the stop and sbottom quarks give rise to CP phases, which trigger the CP violation explicitly in the Higgs sector of the MNMSSM. The masses, the branching ratios for dominant decay channels, and the total decay widths of the five neutral Higgs bosons in the MNMSSM are calculated in the presence of the explicit CP violation. The dependence of these quantities on the CP phases is quite recognizable, for given parameter values.Comment: 25 pages, 8 figure

Charged Higgs boson in the next-to-minimal supersymmetric standard model with explicit CP violation

The phenomenology of the explicit CP violation in the Higgs sector of the next-to-minimal supersymmetric standard model (NMSSM) is investigated, with emphasis on the charged Higgs boson. The radiative corrections due to both quarks and scalar-quarks of the third generation are taken into account, and the negative result of the search for the Higgs bosons at CERN LEP2, with the discovery limit of 0.1 pb, is imposed as a constraint. It is found that there are parameter regions of the NMSSM where the lightest neutral Higgs boson may even be massless, without being detected at LEP2. This implies that the LEP2 data do not contradict the existence of a massless neutral Higgs boson in the NMSSM. For the charged Higgs boson, the radiative corrections to its mass may be negative in some parameter regions of the NMSSM. The phenomenological lower bound on the radiatively corrected mass of the charged Higgs boson is increased as the CP violation becomes maximal, i.e., as the CP violating phase becomes $\pi/2$. At the maximal CP violation, its lower bound is about 110 GeV for 5 $\leqslant \tan \beta \leqslant$ 40. The vacuum expectation value (VEV) of the neutral Higgs singlet is shown to be no smaller than 16 GeV for any parameter values of the NMSSM with explicit CP violation. This value of the lower limit is found to increase up to about 45 GeV as the ratio ($\tan \beta$) of the VEVs of the two Higgs doublets decreases to smaller values ($\sim$ 2). The discovery limit of the Higgs boson search at LEP2 is found to cover about a half of the kinematically allowed part of the whole parameter space of the NMSSM, and the portion is roughly stable against the CP violating phase.Comment: Latex, 24 pages, 6 figure

Possibility of spontaneous CP violation in the nonminimal supersymmetric standard model with two neutral Higgs singlets

A supersymmetric standard model with two Higgs doublets and two Higgs singlets is investigated if it can accommodate the possibility of spontaneous CP violation. Assuming the degeneracy of the scalar quark masses of the third generation, we find that spontaneous CP violation in the Higgs sector is viable in our model. In the case of spontaneous CP violation, the masses of the lightest two neutral Higgs bosons are estimated to be 80 and 125 GeV for some parameter values in our model, which, are consistent with LEP2 data.Comment: 18 pages, 3figure

Pro-inflammatory activation following demyelination is required for myelin clearance and oligodendrogenesis

Remyelination requires innate immune system function, but how exactly microglia and macrophages clear myelin debris after injury and tailor a specific regenerative response is unclear. Here, we asked whether pro-inflammatory microglial/macrophage activation is required for this process. We established a novel toxin-based spinal cord model of de- and remyelination in zebrafish and showed that pro-inflammatory NF-κB-dependent activation in phagocytes occurs rapidly after myelin injury. We found that the pro-inflammatory response depends on myeloid differentiation primary response 88 (MyD88). MyD88-deficient mice and zebrafish were not only impaired in the degradation of myelin debris, but also in initiating the generation of new oligodendrocytes for myelin repair. We identified reduced generation of TNF-α in lesions of MyD88-deficient animals, a pro-inflammatory molecule that was able to induce the generation of new premyelinating oligodendrocytes. Our study shows that pro-inflammatory phagocytic signaling is required for myelin debris degradation, for inflammation resolution, and for initiating the generation of new oligodendrocytes

Higgs Scalars in the Minimal Non-minimal Supersymmetric Standard Model

We consider the simplest and most economic version among the proposed non-minimal supersymmetric models, in which the $\mu$-parameter is promoted to a singlet superfield, whose all self-couplings are absent from the renormalizable superpotential. Such a particularly simple form of the renormalizable superpotential may be enforced by discrete $R$-symmetries which are extended to the gravity-induced non-renormalizable operators as well. We show explicitly that within the supergravity-mediated supersymmetry-breaking scenario, the potentially dangerous divergent tadpoles associated with the presence of the gauge singlet first appear at loop levels higher than 5 and therefore do not destabilize the gauge hierarchy. The model provides a natural explanation for the origin of the $\mu$-term, without suffering from the visible axion or the cosmological domain-wall problem. Focusing on the Higgs sector of this minimal non-minimal supersymmetric standard model, we calculate its effective Higgs potential by integrating out the dominant quantum effects due to stop squarks. We then discuss the phenomenological implications of the Higgs scalars predicted by the theory for the present and future high-energy colliders. In particular, we find that our new minimal non-minimal supersymmetric model can naturally accommodate a relatively light charged Higgs boson, with a mass close to the present experimental lower bound.Comment: 63 pages (12 figures), extended versio

NMSSM Higgs Benchmarks Near 125 GeV

The recent LHC indications of a SM-like Higgs boson near 125 GeV are consistent not only with the Standard Model (SM) but also with Supersymmetry (SUSY). However naturalness arguments disfavour the Minimal Supersymmetric Standard Model (MSSM). We consider the Next-to-Minimal Supersymmetric Standard Model (NMSSM) with a SM-like Higgs boson near 125 GeV involving relatively light stops and gluinos below 1 TeV in order to satisfy naturalness requirements. We are careful to ensure that the chosen values of couplings do not become non perturbative below the grand unification (GUT) scale, although we also examine how these limits may be extended by the addition of extra matter to the NMSSM at the two-loop level. We then propose four sets of benchmark points corresponding to the SM-like Higgs boson being the lightest or the second lightest Higgs state in the NMSSM or the NMSSM-with-extra-matter. With the aid of these benchmark points we discuss how the NMSSM Higgs boson near 125 GeV may be distinguished from the SM Higgs boson in future LHC searches.Comment: 40 pages, 1 figure; Minor changes and further references include