41 research outputs found

    The Segmented Zambezi Sedimentary System from Source to Sink: 1. Sand Petrology and Heavy Minerals

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    The Zambezi River rises at the center of southern Africa, flows across the low-relief Kalahari Plateau, meets Karoo basalt, plunges into Victoria Falls, follows along Karoo rifts, and pierces through Precambrian basement to eventually deliver its load onto the Mozambican passive margin. Reflecting its polyphase evolution, the river is subdivided into segments with different geological and geomorphological character, a subdivision finally fixed by man’s construction of large reservoirs and faithfully testified by sharp changes in sediment composition. Pure quartzose sand recycled from Kalahari desert dunes in the uppermost tract is next progressively enriched in basaltic rock fragments and clinopyroxene. Sediment load is renewed first downstream of Lake Kariba and next downstream of Lake Cahora Bassa, documenting a stepwise decrease in quartz and durable heavy minerals. Composition becomes quartzo-feldspathic in the lower tract, where most sediment is supplied by high-grade basements rejuvenated by the southward propagation of the East African rift. Feldspar abundance in Lower Zambezi sand has no equivalent among big rivers on Earth and far exceeds that in sediments of the northern delta, shelf, and slope, revealing that provenance signals from the upper reaches have ceased to be transmitted across the routing system after closure of the big dams. This high-resolution petrologic study of Zambezi sand allows us to critically reconsider several dogmas, such as the supposed increase of mineralogical “maturity” during long-distance fluvial transport, and forges a key to unlock the rich information stored in sedimentary archives, with the ultimate goal to accurately reconstruct the evolution of this mighty river flowing across changing African landscapes since the late Mesozoic

    High incidence of antimicrobial resistant organisms including extended spectrum beta-lactamase producing Enterobacteriaceae and methicillin-resistant Staphylococcus aureus in nasopharyngeal and blood isolates of HIV-infected children from Cape Town, South Africa

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    <p>Abstract</p> <p>Background</p> <p>There is little information on nasopharyngeal (NP) flora or bacteremia in HIV-infected children. Our aim was to describe the organisms and antimicrobial resistance patterns in children enrolled in a prospective study comparing daily and three times weekly trimethoprim-sulfamethoxazole (TMP-SMX) and isoniazid (INH) or placebo prophylaxis.</p> <p>Methods</p> <p>NP swabs were taken at baseline from HIV-infected children enrolled in the study. Standard microbiological techniques were used. Children were grouped according to previous or current exposure to TMP-SMX and whether enrolled to the study during a period of hospitalization. Blood culture results were also recorded within 12 months of baseline.</p> <p>Results</p> <p>Two hundred and three children, median age 1.8 (Interquartile [IQ]: 0.7–4) years had NP swabs submitted for culture. One hundred and eighty-four (90.7%) had either stage B or C HIV disease. One hundred and forty-one (69.8%) were receiving TMP-SMX and 19 (9.4%) were on antiretroviral therapy. The majority, 168 (82%) had a history of hospitalization and 91 (44.8%) were enrolled during a period of hospitalization. Thirty-two subjects (16.2%) died within 12 months of study entry.</p> <p>One hundred and eighty-one potential pathogens were found in 167 children. The most commonly isolated organisms were <it>Streptococcus pneumoniae </it>(48: 22.2%), Gram-negative respiratory organisms (<it>Haemophilus influenzae </it>and <it>Moraxella catarrhalis</it>) (47: 21.8%), <it>Staphylococcus aureus </it>(44: 20.4%), Enterobacteriaceae 32 (14.8%) and Pseudomonas 5 (2.3%).</p> <p>Resistance to TMP-SMX occurred in > 80% of pathogens except for <it>M. catarrhalis </it>(2: 18.2% of tested organisms). TMP-SMX resistance tended to be higher in those receiving it at baseline (p = 0.065). Carriage of Methicillin resistant <it>S. aureus </it>(MRSA) was significantly associated with being on TMP-SMX at baseline (p = 0.002). Minimal inhibitory concentrations (MIC) to penicillin were determined for 18 <it>S. pneumoniae </it>isolates: 7 (38.9%) were fully sensitive (MIC ≤ 0.06 μg/ml), 9 (50%) had intermediate resistance (MIC 0.12 – 1 μg/ml) and 2 (11.1%) had high level resistance (MIC ≥2 μg/ml). Fifty percent of Enterobacteriaceae produced extended spectrum beta-lactamases (ESBL) (resistant to third generation cephalosporins) and 56% were resistant to gentamicin. Seventy-seven percent of <it>S. aureus </it>were MRSA. Carriage of resistant organisms was not associated with hospitalization.</p> <p>On multivariate logistic regression, risk factors for colonization with Enterobacteriaceae were age ≤ one year (Odds ratio 4.4; 95% Confidence Interval 1.9–10.9; p = 0.0008) and CDC stage C disease (Odds ratio 3.6; 95% Confidence Interval 1.5–8.6; p = 0.005)</p> <p>Nineteen (9.4%) subjects had 23 episodes of bacteremia. Enterobacteriaceae were most commonly isolated (13 of 25 isolates), of which 6 (46%) produced ESBL and were resistant to gentamicin.</p> <p>Conclusion</p> <p>HIV-infected children are colonized with potential pathogens, most of which are resistant to commonly used antibiotics. TMP-SMX resistance is extremely common. Antibiotic resistance is widespread in colonizing organisms and those causing invasive disease. Antibiotic recommendations should take cognizance of resistance patterns. Antibiotics appropriate for ESBL-producing Enterobacteriaceae and MRSA should be used for severely ill HIV-infected children in our region. Further study of antibiotic resistance patterns in HIV-infected children from other areas is needed.</p

    The implications of Methylphenidate use by healthy medical students and doctors in South Africa

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    Background: The use of medical stimulants to sustain attention, augment memory and enhance intellectual capacity is increasing in society. The use of Methylphenidate for cognitive enhancement is a subject that has received much attention in the literature and academic circles in recent times globally. Medical doctors and medical students appear to be equally involved in the off-label use of Methylphenidate. This presents a potential harm to society and the individual as the long-term side effect profile of this medication is unknown. Discussion: The implication of the use of Methylphenidate by medical students and doctors has not been fully explored. This article considers the impact of this use on the traditional role of medicine, society, the patient and suggests a way forward. We discuss the salient philosophy surrounding the use of cognitive enhancement. We query whether there are cognitive benefits to the use of Methylphenidate in healthy students and doctors and whether these benefits would outweigh the risks in taking the medication. Could these benefits lead to tangible outcomes for society and could the off label-use of Methylphenidate potentially undermine the medical profession and the treatment of patients? If cognitive benefits are proven then doctors may be coerced explicitly or implicitly to use the drug which may undermine their autonomy. The increased appeal of cognitive enhancement challenges the traditional role of medicine in society, and calls into question the role of a virtuous life as a contributing factor for achievement. In countries with vast economic disparity such as South Africa an enhancement of personal utility that can be bought may lead to greater inequities. Summary: Under the status quo the distribution of methylphenidate is unjust. Regulatory governmental policy must seek to remedy this while minimising the potential for competitive advantage for the enhanced. Public debate on the use of cognitive enhancement is long overdue and must be stimulated. The use of Methylphenidate for cognitive enhancement is philosophically defendable if long-term research can prove that the risks are negligible and the outcomes tangible

    Habitat quality affects the condition of Luciobarbus sclateri in the Guadiamar River (SW Iberian Peninsula): Effects of disturbances by the toxic spill of the AznalcĂłllar mine

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    This study analyzes the somatic condition of southern Iberian barbel Luciobarbus sclateri (Günther, 1868) in the Guadiamar River (SW Iberian Peninsula). This river was seriously affected by a toxic spill of about 4 million cubic meters of acidic water and 2 million cubic meters of mud rich in heavy metals. Once the spill removal works concluded, sites affected and unaffected by the accident were sampled to study its effects on the fish fauna. The ecological variables registered were related to water quality, physical state of reaches, ecological quality, resources exploited by fish, and potential intra-specific interactions. From an initial 15 ecological variables, seasonal water flow and pH explained most of the variation in barbel condition. This study shows that the Guadiamar River, 56 months after the accident, is still undergoing a recovery process where, beyond ecological variables, proximity to the affected area is the most influential factor for fish condition. © 2012 Springer Science+Business Media B.V

    Gender differences in the use of cardiovascular interventions in HIV-positive persons; the D:A:D Study

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    Physical and Chemical Characteristics of Thermal Springs in Limpopo Province, South Africa

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    ABSTRACT South Africa has a relatively large number of thermal springs -especially for a country in which no recent volcanic activity has occurred. A large proportion of the 87 documented springs are located in the northernmost region of the country where they are associated with deep faults in the earth&apos;s crust. Some of these hot springs have been developed into successful family tourism resorts, while others remain undeveloped. Thermal springs may have considerable economic potential of developed in a sustainable manner. A research project is being conducted to determine the optimal use of the springs. This paper focuses on the geological and structural features of the thermal springs in Limpopo as well as their thermal and chemical characteristics. The characteristics of 14 thermal springs are given, one of which has not been documented previously. The research indicates that most thermal springs in Limpopo are associated with major faults in the Waterberg and Soutpansberg regions of the country. All are of meteoric origin and have temperatures ranging from 25°C to 67.5°C. The mineral composition of the thermal waters reflects the geological formations found at the depth of origin. The fluoride and bromine concentrations of waters from the majority of springs do not conform to domestic water quality guidelines and makes the water unfit for human consumption. Unacceptably high values of trace elements such as antimony, mercury, selenium and arsenic were found at some springs. INTRODUCTION Thermal springs are some of the most under-researched and under-utilised of all natural resources in South Africa. Only around a third of the thermal springs in South Africa have been developed -mainly as family holiday resorts. However, in many other countries, thermal springs are being used for a variety of purposes, ranging from power generation, industrial processing, agriculture, aquaculture, bottling of the mineral waters, the extraction of rare element

    The Segmented Zambezi Sedimentary System from Source to Sink: 2. Geochemistry, Clay Minerals, and Detrital Geochronology

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    Elemental geochemistry, Nd isotopes, clay minerals, and U-Pb zircon ages integrated by petrographic and heavy-mineral data offer a multiproxy panorama of mud and sand composition across the Zambezi sediment-routing system. Detrital zircon geochronology highlights the four major episodes of crustal growth in southern Africa: Irumide ages predominate over Pan-African, Eburnean, and Neoarchean ages. Smectite, dominant in mud generated from Karoo basalts or in the equatorial/winter-dry climate of the Mozambican lowlands, prevails over illite and kaolinite. Elemental geochemistry reflects quartz addition by recycling (Uppermost Zambezi), supply from Karoo basalts (Upper Zambezi), and first-cycle provenance from Precambrian basements (Lower Zambezi). Mildly negative for sediments derived from mafic granulites, gabbros, and basalts, εNd values are most negative for sand derived from cratonic gneisses. Intrasample variability among cohesive mud, very coarse silt, and sand is principally caused by the concentration of Nd-rich monazite in the fine tail of the size distribution. The settling-equivalence effect also explains deviations from the theoretical relationship between εNd and TNd,DM model ages, suggesting that monazite carries a more negative εNd signal than less dense and less durable heavy minerals. Elemental geochemistry and Nd isotopes reveal that the Mazowe-Luenha river system contributes most of the sediment reaching the Zambezi delta today, with minor supply from the Shire River. Sediment yields and erosion rates are much lower on the low-relief Kalahari Plateau than in rugged Precambrian terranes. On the plateau, mineralogical and geochemical indices testify to extensive breakdown of feldspars and garnet unjustified by the present dry climate. Detrital kaolinite is recycled by incision of Cretaceous–Cenozoic paleosols even in the wetter lower catchment, where inefficient hydrolysis is testified to by abundant fresh feldspars and undepleted Ca and Na. Mud geochemistry and surficial corrosion of ferromagnesian minerals indicate that, at present, weathering increases only slightly downstream the Zambezi River
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