6,694 research outputs found

    DNA methylation and regulatory elements during chicken germline stem cell differentiation

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    Funding for Open Access provided by the UMD Libraries' Open Access Publishing Fund.The production of germ cells in vitro would open important new avenues for stem biology and human medicine, but the mechanisms of germ cell differentiation are not well understood. The chicken, as a great model for embryology and development, was used in this study to help us explore its regulatory mechanisms. In this study, we reported a comprehensive genome-wide DNA methylation landscape in chicken germ cells, and transcriptomic dynamics was also presented. By uncovering DNA methylation patterns on individual genes, some genes accurately modulated by DNA methylation were found to be associated with cancers and virus infection, e.g., AKT1 and CTNNB1. Chicken-unique markers were also discovered for identifying male germ cells. Importantly, integrated epigenetic mechanisms were explored during male germ cell differentiation, which provides deep insight into the epigenetic processes associated with male germ cell differentiation and possibly improves treatment options to male infertility in animals and humans

    Variable-structure control with complementarity-inputs for a lean-burn IC engine of a series hybrid vehicle

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    This paper presents a robust controller for an internal combustion (IC) engine, as the first stage of a project to develop a hybrid light urban vehicle, running on ethanol in lean burn. In particular, this work focuses on the design of a sliding mode control for an IC engine of a series hybrid power train. The controller must allow for optimal speed regulation and high fuel efficiency. To attain the latter, a complementary operation mode is proposed for the system inputs. Simulation results are presented and discussed showing the viability and advantages of the control strategy employed.Postprint (author's final draft

    Selective hydrogenation of levulinic acid using Ru/C catalysts prepared by sol-immobilsation

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    A 1% Ru/C catalyst prepared by the sol immobilization method showed a high yield of γ-valerolactone from levulinic acid. We performed an optimization of the catalyst by varying the preparation variables involved in the sol immobilization method and detremined that the ratio of PVA, NaBH4 to Ru and heat treatment conditions play a crucial role in the synthesis of active and selective catalysts. By varying these parameters we have identified the optimum conditions for catalyst preparation by providing well dispersed nanoparticles of RuOx on the carbon support that are reducible under low reaction temperature and in turn gave an enhanced catalytic activity. In contrast to a catalyst prepared without using a PVA stabiliser, the use of a small amount PVA (PVA/Ru = 0.1) provided active nanoparticles, by controlling the steric size of the Ru nanoparticles. An optimum amount of NaBH4 was required in order to provide the reducible Ru species on the surface of catalyst and further increase in NaBH4 was found to cause a decline in activity that was related to the kinetics of nanoparticle formation during catalyst preparation. A variation of heat treatment temperature showed a corresponding decrease in catalytic activity linked with the sintering and an increase in particle size

    Interface Depinning in a Disordered Medium - Numerical Results

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    We propose a lattice model to study the dynamics of a driven interface in a medium with random pinning forces. For driving forces F smaller than a threshold force F_c the whole interface gets pinned. The depinning transition can be characterized by a set of critical exponents: the static and dynamical roughness exponent, the velocity exponent defined by the scaling of the velocity of the interface with F-F_c, and a correlation length exponent. The critical exponents are determined numerically in 1+1 and 2+1 dimensions. Our findings are compared with recent numerical and analytical results for a Langevin equation with quenched noise, which is expected to be in the same universality class. Our results support a recent functional renormalization group calculation by T.Nattermann et.al. (J.Phys.II France 2, 1483 (1992)).Comment: 12 pages, (10 figures will be mailed upon request), Plain TeX, RUB-TP3-93-0

    Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions

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    The androgen receptor (AR) is a ligand-inducible transcription factor that mediates androgen action in target tissues. Upon ligand binding, the AR binds to thousands of genomic loci and activates a cell-type specific gene program. Prostate cancer growth and progression depend on androgen-induced AR signaling. Treatment of advanced prostate cancer through medical or surgical castration leads to initial response and durable remission, but resistance inevitably develops. In castration-resistant prostate cancer (CRPC), AR activity remains critical for tumor growth despite androgen deprivation. Although previous studies have focused on ligand-dependent AR signaling, in this study we explore AR function under the androgen-deprived conditions characteristic of CRPC. Our data demonstrate that AR persistently occupies a distinct set of genomic loci after androgen deprivation in CRPC. These androgen-independent AR occupied regions have constitutively open chromatin structures that lack the canonical androgen response element and are independent of FoxA1, a transcription factor involved in ligand-dependent AR targeting. Many AR binding events occur at proximal promoters, which can act as enhancers to augment transcriptional activities of other promoters through DNA looping. We further show that androgen-independent AR binding directs a gene expression program in CRPC, which is necessary for the growth of CRPC after androgen withdrawal

    The Non-local Kardar-Parisi-Zhang Equation With Spatially Correlated Noise

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    The effects of spatially correlated noise on a phenomenological equation equivalent to a non-local version of the Kardar-Parisi-Zhang equation are studied via the dynamic renormalization group (DRG) techniques. The correlated noise coupled with the long ranged nature of interactions prove the existence of different phases in different regimes, giving rise to a range of roughness exponents defined by their corresponding critical dimensions. Finally self-consistent mode analysis is employed to compare the non-KPZ exponents obtained as a result of the long range -long range interactions with the DRG results.Comment: Plain Latex, 10 pages, 2 figures in one ps fil

    Whole-exome sequencing enables correct diagnosis and surgical management of rare inherited childhood anemia

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    Correct diagnosis of inherited bone marrow failure syndromes is a challenge because of the significant overlap in clinical presentation of these disorders. Establishing right genetic diagnosis is crucial for patients' optimal clinical management and family counseling. A nondysmorphic infant reported here developed severe transfusion-dependent anemia and met clinical criteria for diagnosis of Diamond-Blackfan anemia (DBA). However, whole-exome sequencing demonstrated that the child was a compound heterozygote for a paternally inherited pathogenic truncating variant (SPTA1 c.4975 C>T) and a novel maternally inherited missense variant of uncertain significance (SPTA1 c.5029 G>A) within the spectrin gene, consistent with hereditary hemolytic anemia due to disruption of red blood cell (RBC) cytoskeleton. Ektacytometry demonstrated abnormal membrane flexibility of the child's RBCs. Scanning electron microscopy revealed morphological aberrations of the patient's RBCs. Both parents were found to have mild hereditary elliptocytosis. Importantly, patients with severe RBC membrane defects may be successfully managed with splenectomy to minimize peripheral destruction of misshapen RBCs, whereas patients with DBA require lifelong transfusions, steroid therapy, or hematopoietic stem cell transplantation. As suggested by the WES findings, splenectomy rendered our patient transfusion-independent, improving the family's quality of life and preventing transfusion-related iron overload. This case illustrates the utility of whole-exome sequencing in clinical care of children with genetic disorders of unclear presentation

    Dissociation of H2 molecule on the {\beta}-Ga2O3 (100)B surface: The critical role of oxygen vacancy

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    We systematically study the dissociation of H2 molecules on the {\beta}-Ga2O3 (100)B surface, with the influences of surface oxygen vacancy being considered. After introducing the surface oxygen vacancy, the nearest topmost O(I) atom becomes very active, and hydrogen molecules become much easier to dissociate.Comment: 6 pages, 5 figure
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