Conservation of Neutral Substitution Rate and Substitutional Asymmetries in Mammalian Genes

Local variation in neutral substitution rate across mammalian genomes is governed by several factors, including sequence context variables and structural variables. In addition, the interplay of replication and transcription, known to induce a strand bias in mutation rate, gives rise to variation in substitutional strand asymmetries. Here, we address the conservation of variation in mutation rate and substitutional strand asymmetries using primate- and rodent-specific repeat elements located within the introns of protein-coding genes. We find significant but weak conservation of local mutation rates between human and mouse orthologs. Likewise, substitutional strand asymmetries are conserved between human and mouse, where substitution rate asymmetries show a higher degree of conservation than mutation rate. Moreover, we provide evidence that replication and transcription are correlated to the strength of substitutional asymmetries. The effect of transcription is particularly visible for genes with highly conserved gene expression. In comparison with replication and transcription, mutation rate influences the strength of substitutional asymmetries only marginally

Heavy ion collisions with non-equilibrium Dirac-Brueckner mean fields

The influence of realistic interactions on the reaction dynamics in intermediate energy heavy ion collisions is investigated. The mean field in relativistic transport calculations is derived from microscopic Dirac-Brueckner (DB) self-energies, taking non-equilibrium effects, in particular the anisotropy of the local phase space configurations, into account. Thus this approach goes beyond the local density approximation. A detailed analysis of various in-plane and out-of-plane flow observables is presented for Au on Au reactions at incident energies ranging from 250 to 800 A.MeV and the results are compared to recent measurements of the FOPI collaboration. An overall good agreement with in-plane flow data and a reasonable description of the out-of-plane emission is achieved. For these results the intrinsic momentum dependence of the non-equilibrium mean fields is important. On the other hand, the local density approximation with the same underlying DB forces as well as a standard non-linear version of the $\sigma\omega$ model are less successful in describing the present data. This gives evidence of the applicability of self energies derived from the DB approach to nuclear matter also far from saturation and equilibrium.Comment: 63 pages Latex, using Elsevier style, 20 ps-figures, to appear in Nucl. Phys.

Low Q^2 Jet Production at HERA and Virtual Photon Structure

The transition between photoproduction and deep-inelastic scattering is investigated in jet production at the HERA ep collider, using data collected by the H1 experiment. Measurements of the differential inclusive jet cross-sections dsigep/dEt* and dsigmep/deta*, where Et* and eta* are the transverse energy and the pseudorapidity of the jets in the virtual photon-proton centre of mass frame, are presented for 0 < Q2 < 49 GeV2 and 0.3 < y < 0.6. The interpretation of the results in terms of the structure of the virtual photon is discussed. The data are best described by QCD calculations which include a partonic structure of the virtual photon that evolves with Q2.Comment: 20 pages, 5 Figure

Hadron Production in Diffractive Deep-Inelastic Scattering

Characteristics of hadron production in diffractive deep-inelastic positron-proton scattering are studied using data collected in 1994 by the H1 experiment at HERA. The following distributions are measured in the centre-of-mass frame of the photon dissociation system: the hadronic energy flow, the Feynman-x (x_F) variable for charged particles, the squared transverse momentum of charged particles (p_T^{*2}), and the mean p_T^{*2} as a function of x_F. These distributions are compared with results in the gamma^* p centre-of-mass frame from inclusive deep-inelastic scattering in the fixed-target experiment EMC, and also with the predictions of several Monte Carlo calculations. The data are consistent with a picture in which the partonic structure of the diffractive exchange is dominated at low Q^2 by hard gluons.Comment: 16 pages, 6 figures, submitted to Phys. Lett.

Energy Flow in the Hadronic Final State of Diffractive and Non-Diffractive Deep-Inelastic Scattering at HERA

An investigation of the hadronic final state in diffractive and non--diffractive deep--inelastic electron--proton scattering at HERA is presented, where diffractive data are selected experimentally by demanding a large gap in pseudo --rapidity around the proton remnant direction. The transverse energy flow in the hadronic final state is evaluated using a set of estimators which quantify topological properties. Using available Monte Carlo QCD calculations, it is demonstrated that the final state in diffractive DIS exhibits the features expected if the interaction is interpreted as the scattering of an electron off a current quark with associated effects of perturbative QCD. A model in which deep--inelastic diffraction is taken to be the exchange of a pomeron with partonic structure is found to reproduce the measurements well. Models for deep--inelastic $ep$ scattering, in which a sizeable diffractive contribution is present because of non--perturbative effects in the production of the hadronic final state, reproduce the general tendencies of the data but in all give a worse description.Comment: 22 pages, latex, 6 Figures appended as uuencoded fil

A Search for Selectrons and Squarks at HERA

Data from electron-proton collisions at a center-of-mass energy of 300 GeV are used for a search for selectrons and squarks within the framework of the minimal supersymmetric model. The decays of selectrons and squarks into the lightest supersymmetric particle lead to final states with an electron and hadrons accompanied by large missing energy and transverse momentum. No signal is found and new bounds on the existence of these particles are derived. At 95% confidence level the excluded region extends to 65 GeV for selectron and squark masses, and to 40 GeV for the mass of the lightest supersymmetric particle.Comment: 13 pages, latex, 6 Figure

Lambda Hyperons in 2 A*GeV Ni + Cu Collisions

A sample of Lambda's produced in 2 A*GeV Ni + Cu collisions has been obtained with the EOS Time Projection Chamber at the Bevalac. Low background in the invariant mass distribution allows for the unambiguous demonstration of Lambda directed flow. The transverse mass spectrum at mid-rapidity has the characteristic shoulder-arm shape of particles undergoing radial transverse expansion. A linear dependence of Lambda multiplicity on impact parameter is observed, from which a total Lambda + Sigma^0 production cross section of $112 +/- 24 mb is deduced. Detailed comparisons with the ARC and RVUU models are made.Comment: Revised version accepted for publication in Phys. Lett.

Gamma-induced background in the KATRIN main spectrometer

International audienceThe KArlsruhe TRItium Neutrino (KATRIN) experiment aims to make a model-independent determination of the effective electron antineutrino mass with a sensitivity of 0.2 eV/c 2 . It investigates the kinematics of β -particles from tritium β -decay close to the endpoint of the energy spectrum. Because the KATRIN main spectrometer (MS) is located above ground, muon-induced backgrounds are of particular concern. Coincidence measurements with the MS and a scintillator-based muon detector system confirmed the model of secondary electron production by cosmic-ray muons inside the MS. Correlation measurements with the same setup showed that about 12% of secondary electrons emitted from the inner surface are induced by cosmic-ray muons, with approximately one secondary electron produced for every 17 muon crossings. However, the magnetic and electrostatic shielding of the MS is able to efficiently suppress these electrons, and we find that muons are responsible for less than 17% (90% confidence level) of the overall MS background

White Matter Lesion Progression: Genome-Wide Search for Genetic Influences

White matter lesion (WML) progression on magnetic resonance imaging (MRI) is related to cognitive decline and stroke, but its determinants besides baseline WML burden are largely unknown. Here, we estimated heritability of WML progression, and sought common genetic variants associated with WML progression in elderly participants from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium