Assessment of the Effectiveness of Using Magnoimmunosorbents for the Selective Concentration of Anthrax Agent Spores

The aim of the study was to assess the effectiveness of the developed anthrax magnoimmunosorbents (MIS) for the selective concentration of Bacillus anthracis spores and to increase the sensitivity of anthrax agent detection techniques, including when testing soil samples.Materials and methods. We used 10 vaccine strains of B. anthracis and 30 strains of closely related bacilli of the genus Bacillus (B. cereus – 15, B. thuringiensis – 10, B. megaterium – 5) with typical species properties. The work was performed on three experimental batches of magnoimmunosorbents. DNA extraction and PCR setting was carried out in compliance with the instructions for reagent panel for B. anthracis DNA detection “ApliSens Bacillus anthracis-FRT”.Results and discussion. It is shown that when using MIS, the sensitivity of the cultural method is increased by at least 7 times (taking into account the possibility of sorption of 1–10 or more spores on a sorbent particle). The sensitivity of the PCR method is improved by 10 times and amounts to 50 B. anthracis spores per 1 ml for the samples concentrated with the help of MIS. The sensitivity of the bacteriological method using MIS increases by a factor of 7.5 when testing the artificially contaminated with B. anthracis soil samples. Hence, application of the developed MIS makes it possible to significantly enhance the sensitivity of anthrax agent detection methods and can be considered as an effective means of sample preparation for the investigation of environmental objects (soil)

Application of Geoinformation Technologies for Assessment of the Epizootiological and Epidemiological Situation on Anthrax in the Volgograd Region

Objective of the study was to assess the epizootiological and epidemiological situation on anthrax in the Volgograd Region in the period of 1920–2019, to zone the territory according to the degree of disadvantage as regards anthrax using geographic information technologies. Materials and methods. The reporting data of the Rospotrebnadzor Administration, Veterinary Committee in the Volgograd Region, and literature sources were studied. ESRI-ArcGIS 10 software was used as a GIS-platform. Epizootic index was applied in the zoning according to the degree of disadvantage regarding anthrax in the territories of the region. Results and discussion. Currently, 529 stationary potentially hazardous as regards anthrax areas have been registered in 33 districts of the Volgograd Region, 53 anthrax burial sites are accounted for in 20 districts. During the period of 1970–2019, 226 cases of infection of farm animals and 37 cases of anthrax among humans were detected. Most of the stationary potentially hazardous as regards anthrax areas (347 sites, 66 %) were formed in 1930–1949. Maximum activity was observed in 1930–1959. The zoning of the territory of the Volgograd Region was carried out using ESRI-ArcGIS 10 software, as a result of which the municipal districts were divided into four groups according to the degree of disadvantage regarding anthrax. The potential of different soil and landscape zones in the persistence of the anthrax microbe was studied. It has been found that chernozem, chestnut, dark-chestnut soil types, which occupying more than 50 % of the total region area and predominate in the zones of moderately arid and dry steppes, alongside alluvial meadow soils of river valleys, floodplains of rivers are very favorable for the persistence of the anthrax pathogen. The territory of the Volgograd Region is endemic for this infection and epizootiological and epidemiological well-being in the region largely depends on the completeness and timelines of preventive measures. The use of geographic information technologies provides a comprehensive analysis of the infection activity manifestations with reliable improvement of the anti-anthrax surveillance system and control in making differentiated managerial decisions

Analysis of the Situation on Anthrax in the World in 2022, the Forecast for the Russian Federation for 2023

The paper provides the results of analysis of the epizootiological and epidemiological situation on anthrax in the world in 2022, also, the forecast of incidence rates for the Russian Federation in 2023 is presented. In 2022, two cases of anthrax in farm animals and two cases of cutaneous form of infection in humans were registered in Russia, in the constituent entities of the North Caucasian Federal District: the Republic of Dagestan and the Stavropol Territory. The tense situation on anthrax was reported in the neighboring countries: Azerbaijan, Georgia, Kazakhstan, Kyrgyzstan, Tajikistan, Uzbekistan, and Ukraine. Epizootics of infection with the highest number of affected farm and wild animals were recorded in the countries of Africa, Asia, North America and Europe. The incidence of anthrax among people in the far abroad (mainly in Africa and Asia) was mostly associated with consuming the meat of sick and fallen farm animals, contact with infected animals, animal products. The incidence of anthrax in animals and humans in the Russian Federation in 2023 will largely depend on the scale of coverage with specific immunization of susceptible animals and persons at risk of infection and, given the strict implementation of comprehensive surveillance measures, will be limited to the registration of potentially possible single cases of infection

Epidemiological and Epizootiological Situation on Anthrax around the World in 2021, the Forecast for 2022 in the Russian Federation

A generalized analysis of the epidemiological and epizootiological situation on anthrax in the world in 2021 is presented. Provided is the forecast for the Russian Federation for 2022. In 2021, two cases of cutaneous form of anthrax were recorded in Russia among population living in the Siberian (the Republic of Tuva) and the North Caucasian (the Republic of Dagestan) Federal Districts. Epizootiological and epidemiological instability due to the infection was manifested in neighboring countries – Azerbaijan, Armenia, Kazakhstan, Kyrgyzstan, and Ukraine. Anthrax among farm and wild animals was registered in a number of countries in Asia, Africa, Europe, North and South America, and Australia. Human cases were noted mainly in Africa (Zimbabwe, Kenya, Uganda, China) and Asia (India, Indonesia, Iraq), and were caused by the contact and/or alimentary pathways of transmission of the pathogen as a result of forced slaughter of sick and/or butchering of fallen farm animals, consuming meat of sick and fallen cattle. The level of anthrax incidence among farm animals and humans in the Russian Federation in 2022 will be predetermined by the completeness of the implementation of regulated preventive measures, and, provided the strict introduction of comprehensive epizootiological and epidemiological surveillance, will be limited to sporadic cases of infection

Pattern formation in 2-frequency forced parametric waves

We present an experimental investigation of superlattice patterns generated on the surface of a fluid via parametric forcing with 2 commensurate frequencies. The spatio-temporal behavior of 4 qualitatively different types of superlattice patterns is described in detail. These states are generated via a number of different 3--wave resonant interactions. They occur either as symmetry--breaking bifurcations of hexagonal patterns composed of a single unstable mode or via nonlinear interactions between the two primary unstable modes generated by the two forcing frequencies. A coherent picture of these states together with the phase space in which they appear is presented. In addition, we describe a number of new superlattice states generated by 4--wave interactions that arise when symmetry constraints rule out 3--wave resonances.Comment: The paper contains 34 pages and 53 figures and provides an extensive review of both the theoretical and experimental work peformed in this syste

Population genomics of post-glacial western Eurasia.

Western Eurasia witnessed several large-scale human migrations during the Holocene <sup>1-5</sup> . Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes-mainly from the Mesolithic and Neolithic periods-from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a 'great divide' genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 BP, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 BP, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a 'Neolithic steppe' cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations

The origins and spread of domestic horses from the Western Eurasian steppes

This is the final version. Available on open access from Nature Research via the DOI in this recordData availability: All collapsed and paired-end sequence data for samples sequenced in this study are available in compressed fastq format through the European Nucleotide Archive under accession number PRJEB44430, together with rescaled and trimmed bam sequence alignments against both the nuclear and mitochondrial horse reference genomes. Previously published ancient data used in this study are available under accession numbers PRJEB7537, PRJEB10098, PRJEB10854, PRJEB22390 and PRJEB31613, and detailed in Supplementary Table 1. The genomes of ten modern horses, publicly available, were also accessed as indicated in their corresponding original publications57,61,85-87.NOTE: see the published version available via the DOI in this record for the full list of authorsDomestication of horses fundamentally transformed long-range mobility and warfare. However, modern domesticated breeds do not descend from the earliest domestic horse lineage associated with archaeological evidence of bridling, milking and corralling at Botai, Central Asia around 3500 BC. Other longstanding candidate regions for horse domestication, such as Iberia and Anatolia, have also recently been challenged. Thus, the genetic, geographic and temporal origins of modern domestic horses have remained unknown. Here we pinpoint the Western Eurasian steppes, especially the lower Volga-Don region, as the homeland of modern domestic horses. Furthermore, we map the population changes accompanying domestication from 273 ancient horse genomes. This reveals that modern domestic horses ultimately replaced almost all other local populations as they expanded rapidly across Eurasia from about 2000 BC, synchronously with equestrian material culture, including Sintashta spoke-wheeled chariots. We find that equestrianism involved strong selection for critical locomotor and behavioural adaptations at the GSDMC and ZFPM1 genes. Our results reject the commonly held association between horseback riding and the massive expansion of Yamnaya steppe pastoralists into Europe around 3000 BC driving the spread of Indo-European languages. This contrasts with the scenario in Asia where Indo-Iranian languages, chariots and horses spread together, following the early second millennium BC Sintashta culture

The Origins and Spread of Domestic Horses from the Western Eurasian Steppes

Domestication of horses fundamentally transformed long-range mobility and warfare1. However, modern domesticated breeds do not descend from the earliest domestic horse lineage associated with archaeological evidence of bridling, milking and corralling2–4 at Botai, Central Asia around 3500 bc3. Other longstanding candidate regions for horse domestication, such as Iberia5 and Anatolia6, have also recently been challenged. Thus, the genetic, geographic and temporal origins of modern domestic horses have remained unknown. Here we pinpoint the Western Eurasian steppes, especially the lower Volga-Don region, as the homeland of modern domestic horses. Furthermore, we map the population changes accompanying domestication from 273 ancient horse genomes. This reveals that modern domestic horses ultimately replaced almost all other local populations as they expanded rapidly across Eurasia from about 2000 bc, synchronously with equestrian material culture, including Sintashta spoke-wheeled chariots. We find that equestrianism involved strong selection for critical locomotor and behavioural adaptations at the GSDMC and ZFPM1 genes. Our results reject the commonly held association7 between horseback riding and the massive expansion of Yamnaya steppe pastoralists into Europe around 3000 bc8,9 driving the spread of Indo-European languages10. This contrasts with the scenario in Asia where Indo-Iranian languages, chariots and horses spread together, following the early second millennium bc Sintashta culture11,12. © 2021, The Author(s).We thank all members of the AGES group at CAGT. We are grateful for the Museum of the Institute of Plant and Animal Ecology (UB RAS, Ekaterinburg) for providing specimens. The work by G. Boeskorov is done on state assignment of DPMGI SB RAS. This project was supported by the University Paul Sabatier IDEX Chaire d’Excellence (OURASI); Villum Funden miGENEPI research programme; the CNRS ‘Programme de Recherche Conjoint’ (PRC); the CNRS International Research Project (IRP AMADEUS); the France Génomique Appel à Grand Projet (ANR-10-INBS-09-08, BUCEPHALE project); IB10131 and IB18060, both funded by Junta de Extremadura (Spain) and European Regional Development Fund; Czech Academy of Sciences (RVO:67985912); the Zoological Institute ZIN RAS (АААА-А19-119032590102-7); and King Saud University Researchers Supporting Project (NSRSP–2020/2). The research was carried out with the financial support of the Russian Foundation for Basic Research (19-59-15001 and 20-04-00213), the Russian Science Foundation (16-18-10265, 20-78-10151, and 21-18-00457), the Government of the Russian Federation (FENU-2020-0021), the Estonian Research Council (PRG29), the Estonian Ministry of Education and Research (PRG1209), the Hungarian Scientific Research Fund (Project NF 104792), the Hungarian Academy of Sciences (Momentum Mobility Research Project of the Institute of Archaeology, Research Centre for the Humanities); and the Polish National Science Centre (2013/11/B/HS3/03822). This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie (grant agreement 797449). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreements 681605, 716732 and 834616)