Use of QSARs in international decision-making frameworks to predict health effects of chemical substances

This article is a review of the use of quantitative (and qualitative) structure-activity relationships (QSARs and SARs) by regulatory agencies and authorities to predict acute toxicity, mutagenicity, carcinogenicity, and other health effects. A number of SAR and QSAR applications, by regulatory agencies and authorities, are reviewed. These include the use of simple QSAR analyses, as well as the use of multivariate QSARs, and a number of different expert system approaches

The alignment of agricultural and nature conservation policies in the European Union.

Europe is a region of relatively high population density and productive agriculture subject to substantial government intervention under the Common Agricultural Policy (CAP). Many habitats and species of high conservation interest have been created by the maintenance of agricultural practices over long periods. These practices are often no longer profitable, and nature conservation initiatives require government support to cover the cost for them to be continued. The CAP has been reformed both to reduce production of agricultural commodities at costs in excess of world prices and to establish incentives for landholders to adopt voluntary conservation measures. A separate nature conservation policy has established an extensive series of protected sites (Natura 2000) that has, as yet, failed to halt the loss of biodiversity. Additional broader scale approaches have been advocated for conservation in the wider landscape matrix, including the alignment of agricultural and nature conservation policies, which remains a challenge. Possibilities for alignment include further shifting of funds from general support for farmers toward targeted payments for biodiversity goals at larger scales and adoption of an ecosystem approach. The European response to the competing demands for land resources may offer lessons globally as demands on rural land increase.This is the author accepted manuscript. The final version is available fromWiley via http://dx.doi.org/10.1111/cobi.1253

A genomewide association study in divergently selected lines in rabbits reveals novel genomic regions associated with litter size traits

[EN] Uterine capacity (UC), defined as the total number of kits from unilaterally ovariectomized does at birth, has a high genetic correlation with litter size. The aim of our research was to identify genomic regions associated with litter size traits through a genome-wide association study using rabbits from a divergent selection experiment for UC. A high-density SNP array (200K) was used to genotype 181 does from a control population, high and low UC lines. Traits included total number born (TNB), number born alive (NBA), number born dead, ovulation rate (OR), implanted embryos (IE), and embryo, foetal and prenatal survivals at second parity. We implemented the Bayes B method and the associations were tested by Bayes factors and the percentage of genomic variance (GV) explained by windows. Different genomic regions associated with TNB, NBA, IE, and OR were found. These regions explained 7.36%, 1.27%, 15.87%, and 3.95% of GV, respectively. Two consecutive windows on chromosome 17 were associated with TNB, NBA, and IE. This genomic region accounted for 6.32% of GV of TNB. In this region, we found the BMP4, PTDGR, PTGER2, STYX and CDKN3 candidate genes which presented functional annotations linked to some reproductive processes. Our findings suggest that a genomic region on chromosome 17 has an important effect on litter size traits. However, further analyses are needed to validate this region in other maternal rabbit lines.The work was funded by project AGL2014-55921-C2-1-P from the National Programme for Fostering Excellence in Scientific and Technical Research Project I+D. B. Samuel Sosa-Madrid was supported by a grant from the National Secretariat of Science, Technology, and Innovation of Panama (SENACYT) for a master's degree (the first stage of this study): BECA-2199-40-2012. Also, he was supported by an FPI grant from the Ministry of Economy and Competitiveness of Spain (the second stage of this study): BES-2015-074194.Sosa-Madrid, BS.; Santacreu Jerez, MA.; Blasco Mateu, A.; Fontanesi, L.; Pena, R.; Ibáñez-Escriche, N. (2020). A genomewide association study in divergently selected lines in rabbits reveals novel genomic regions associated with litter size traits. Journal of Animal Breeding and Genetics. 137(2):123-138. https://doi.org/10.1111/jbg.12451S1231381372Aken, B. L., Ayling, S., Barrell, D., Clarke, L., Curwen, V., Fairley, S., … Searle, S. M. J. (2016). The Ensembl gene annotation system. Database, 2016, baw093. doi:10.1093/database/baw093Al-Samerria, S., Al-Ali, I., McFarlane, J. R., & Almahbobi, G. (2015). The impact of passive immunisation against BMPRIB and BMP4 on follicle development and ovulation in mice. REPRODUCTION, 149(5), 403-411. doi:10.1530/rep-14-0451Argente, M. J., Merchán, M., Peiró, R., García, M. L., Santacreu, M. A., Folch, J. 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Assessment of a global positioning system to evaluate activities of organic chickens at pasture

The aims of the present study were to assess the use of a global positioning system (GPS) monitoring device to evaluate the activities of organic chickens at pasture. Two hundred male birds from 2 strains (100 slow-growing and 100 fast-growing birds) were reared separately in 4 indoor pens (0.10 m2/bird), each with access to a grass paddock (10 m2/bird; 2 replications/ genotype). During the last week of age (from 73 to 80 d of age), the kinetic activity of chickens was monitored by behavioral observations (n = 20; focal bird sampling method) and a GPS (n = 10; Super Trackstick, Atex International, Route d'Esch, Luxembourg) equipped with a universal serial bus port for quick viewing on Google Earth's 3-D model, giving information concerning the date, hour, environmental conditions, and coordinates of monitored birds. Based on the focal bird sampling method, fast-growing birds tended to stay indoors rather than forage in the pasture, whereas slow-growing birds spent more time outdoors (P < 0.05). Moreover, visual observations confirmed GPS records, whereas slow growing birds were observed to perform more active behaviors stand less, and spend more time outdoors than indoors. Based on GPS tracks, slow-growing chickens covered an average daily distance of 1,230 m, whereas fastgrowing birds covered only 125 m. In conclusion, GPS appears to be a suitable way to evaluate the kinetic activity of chickens. We also concluded that locomotor activity, which requires a high energy consumption, is low in fast-growing birds compared with slow-growing ones, allowing the fast-growing birds to reallocate energy to productive traits

Nitrate contamination of drinking water: relationship with HPRT variant frequency in lymphocyte DNA and urinary excretion of N-nitrosamines.

We studied peripheral lymphocyte HPRT variant frequency and endogenous nitrosation in human populations exposed to various nitrate levels in their drinking water. Four test populations of women volunteers were compared. Low and medium tap water nitrate exposure groups (14 and 21 subjects) were using public water supplies with nitrate levels of 0.02 and 17.5 mg/l, respectively. Medium and high well water nitrate exposure groups (6 and 9 subjects) were using private water wells with mean nitrate levels of 25 and 135 mg/l, respectively. Higher nitrate intake by drinking water consumption resulted in a dose-dependent increase in 24-hr urinary nitrate excretion and in increased salivary nitrate and nitrite levels. The mean log variant frequency of peripheral lymphocytes was significantly higher in the medium well water exposure group than in the low and medium tap water exposure groups. An inverse correlation between peripheral lymphocyte labeling index and nitrate concentration of drinking water was observed. Analysis of N-nitrosamine in the urine of 22 subjects by gas chromatography-mass spectrometry revealed the presence of N-nitrosopyrrolidine in 18 subjects. Analysis of the mutagenicity of well water samples showed that a small number of the well water samples were mutagenic in the Ames Salmonella typhimurium test after concentration over XAD-2 resin. In conclusion, consumption of drinking water, especially well water, with high nitrate levels can imply a genotoxic risk for humans as indicated by increased HPRT variant frequencies and by endogenous formation of carcinogenic N-nitroso compounds from nitrate-derived nitrite

False positive and false negative errors in the design and implementation of agri-environmental policies: a case study on water quality and agricultural nutrients

When designing and implementing agri-environmental policies to reduce nutrient loss, action programmes may falsely address areas where the nutrient issue from agricultural activity is not currently important and is not likely to become so in the future (a false positive), or may fail to address areas where the agricultural nutrient issue is currently important or may likely become so in the future (a false negative). Based on a case study of the Louros watershed in Greece, this work identifies database and modelling sources of false positives and negatives and proposes a decision making process aimed at minimizing the possibility of committing such errors. The baseline is well simulated and shows that the Louro’s watershed falls behind a Good Environmental Status, at least marginally. Simulated mitigation measures show that the river’s status can be upgraded to “Good”, at least as concerns nitrates and ammonium. Simulated climate change does not seem to exert an important positive or negative effect. Land use changes forecasting considerably less cultivated area have a significant effect on Total Phosphorous but not on nitrates or ammonium concentrations. The non-linearity between nutrient disposition (inputs) and nutrient concentration in downstream water bodies (output) and the many factors that affect the nutrient disposition-transportation-concentration chain, highlights the importance of simulating the effects of mitigation actions and of future climate and land use changes before adopting and establishing agri-environmental measures

Who is dominant? Occupational Health and Safety management in Chinese shipping

This paper investigates the implementation of the International Safety Management (ISM) Code in the Chinese chemical shipping industry. In particular, it examines the tension between management focus on speedy production and seafarers’ participation in safety related decision making and analyses how this tension is managed. It shows that while on paper companies have policies stating safety commitment in compliance with the ISM Code, in practice shore management tends to prioritise efficient production. When Occupational Health and Safety (OHS) and ship’s sailing schedules are in conflict, managers implicitly request shipmasters to prioritise the ‘core interest’ of the company. Although the ISM Code endows shipmasters with overriding authorities in relation to shipboard safety management, they tend to read between the lines and tacitly follow managers’ intentions. The study suggests that if the ISM implementation makes a difference, it is the practice that managers become more subtle in giving orders to exert their dominance. The study further reveals that the management’s practice is not only irresponsive to seafarers’ safety concerns but also makes rather limited contributions to promote OHS Management

Farm management factors associated with bulk tank somatic cell count in Irish dairy herds

The relationship between bulk tank somatic cell count (SCC) and farm management and infrastructure was examined using data from 398 randomly selected, yet representative, Irish dairy farms where the basal diet is grazed grass. Median bulk tank SCC for the farms was 282,887 cells/ml ranging from 82,209 to 773,028 cells/ml. Two questionnaires were administered through face-to-face contact with each farmer. Herd-level factors associated with bulk tank SCC were determined using linear models with annual somatic cell score (i.e., arithmetic mean of the natural logarithm of bulk tank SCC) included as the dependent variable. All herd level factors were analysed individually in separate regression models, which included an adjustment for geographical location of the farm; a multiple regression model was subsequently developed. Management practices associated with low SCC included the use of dry cow therapy, participation in a milk recording scheme and the use of teat disinfection post-milking. There was an association between low SCC and an increased level of hygiene and frequency of cleaning of the holding yard, passageways and cubicles. Herd management factors associated with bulk tank SCC in Irish grazing herds are generally in agreement with most previous studies from confinement systems of milk production