Gipsy 3D: Analysis, Visualization and Vo-Tools

The scientific goals of the AMIGA project are based on the analysis of a significant amount of spectroscopic 3D data. In order to perform this work we present an initiative to develop a new VO compliant package, including present core applications and tasks offered by the Groningen Image Processing System (GIPSY), and new ones based on use cases elaborated in collaboration with ad- vanced users. One of the main goals is to provide local interoperability between GIPSY (visualization and data analysis) and other VO software. The connectivity with the Virtual Observatory environment will provide general access to 3D data VO archives and services, maximizing the potential for scientific discovery.Comment: 2 pages, 1 figure, to appear in the proceedings of the "Multi-wavelength Astronomy and Virtual Observatory" Workshop held at ESAC 1-3 Dec 200

Simulated effects of herb competition on planted Quercus faginea seedlings in Mediterranean abandoned cropland

We tested simulated effects of herb competition on the performance of planted seedlings of Quercus faginea ssp. faginea in Mediterranean abandoned cropland. We produced three types of environment with respect to herb competition: absence of competition (AC), below-ground competition (BGC), and total competition (TC). We assessed the performance of Q. faginea seedlings in each treatment in five ways: (1) seedling mortality, (2) leaf length and total plant leaf area, (3) water potential, (4) total biomass and biomass allocation, and (5) non-structural carbohydrate storage in different plant organs. We also measured (6) soil moisture at different depths and (7) biomass production of herbs. The TC treatment reduced water availability more than the BGC treatment, in agreement with the most pronounced water stress in seedlings under TC conditions. BGC and TC treatments showed a high and similar seedling mortality, which was one order of magnitude higher than that in the AC treatment. Competition treatments affected glucose concentration in both shoots and roots, and followed the rank TC > BGC > AC. Q. faginea seedlings might compensate a lower water availability through glucose accumulation in leaves to reduce the osmotic potential. There was a maximum starch concentration in the BGC treatment that hints that a moderate resource limitation would limit tissue growth but not carbon assimilation. We conclude that the negative effects of herbs on Q. faginea seedlings are mostly a result of competition for water, and that this competition is noticeable since the earliest stages of the establishment. Complete weed removal is a technique that would strongly improve seedling survivorship.This research has been funded by the projects Factores limitantes de la revegetación con especies leñosas autóctonas de áreas degradadas en ambientes mediterráneos.\ud Rendimiento de distintas actuaciones de manejo (REN2000-745), granted by the\ud CICYT (Spanish government) and Estrategias para la restauración de paisajes\ud degradados en zonas secas (E040/2001), granted by the Universidad de Alcalá. We are\ud indebted to the students Olivier Pastre and Antoine Aubeneau for their assistance in\ud field and lab work. We acknowledge the comments on a preliminary version of this\ud manuscript from our colleagues Fernando Valladares, Pedro Villar, and Miguel A.\ud Zavala. Peter Buckley and an anonymous reviewer improved its final version

Unexpected appetitive events promote positive affective state in juvenile European sea bass

Some animal species exhibit considerable physiological and behavioural alterations in response to captivity. It has been hypothesized, but rarely tested, that such changes reflect a negative affective state that is associated to this specific context. In the last years, judgement bias measures have emerged as reliable indicators of animal affective state, under the assumption that individuals in a negative affective state are more likely to evaluate ambiguous stimuli as negative and display therefore pessimistic behaviours. Here, we have developed a judgement bias task for juvenile European sea bass (Dicentrarchus labrax) aiming to measure optimism/pessimism in this marine species, which have previously been reported to show important dysregulations in captive settings. Our results show that juvenile sea bass exhibit a considerable bias towards pessimistic behaviours in laboratory settings. Furthermore, juveniles that received an unexpected positive event during the judgement bias test displayed more optimistic responses toward ambiguous stimuli as compared to control fish, indicating a positive change in their affective state induced by the appetitive experience. These results reveal a direct interaction of the internal affective state with decision-making processing under ambiguity in juvenile European sea bass, highlighting therefore the potential of judgement bias tests as a tool for the advancement and improvement of our understanding of welfare in finfish aquaculture.Fundação para a Ciência e Tecnologia - FCT; Ministry of Science and Innovation (MCIN)info:eu-repo/semantics/publishedVersio

Short telomeres drive pessimistic judgement bias in zebrafish.

The role of telomerase reverse transcriptase has been widely investigated in the contexts of ageing and age-related diseases. Interestingly, decreased telomerase activities (and accelerated telomere shortening) have also been reported in patients with emotion-related disorders, opening the possibility for subjective appraisal of stressful stimuli playing a key role in stress-driven telomere shortening. In fact, patients showing a pessimistic judgement bias have shorter telomeres. However, in humans the evidence for this is correlational and the causal directionality between pessimism and telomere shortening has not been established experimentally yet. We have developed and validated a judgement bias experimental paradigm to measure subjective evaluations of ambiguous stimuli in zebrafish. This behavioural assay allows classification of individuals in an optimistic-pessimistic dimension (i.e. from individuals that consistently evaluate ambiguous stimuli as negative to others that perceive them as positive). Using this behavioural paradigm we found that telomerase-deficient zebrafish (tert - / - ) were more pessimistic in response to ambiguous stimuli than wild-type zebrafish. The fact that individuals with constitutive shorter telomeres have pessimistic behaviours demonstrates for the first time in a vertebrate model a genetic basis of judgement bias.info:eu-repo/semantics/publishedVersio

FIRST REVIEW OF THE LYNCODONTINI MATERIAL (MUSTELIDAE, CARNIVORA, MAMMALIA) FROM THE LOWER PLEISTOCENE ARCHAEO-PALAEONTOLOGICAL SITES OF ORCE (SOUTHEASTERN SPAIN)

Two archaeo-palaeontological Lower Pleistocene sites of Orce (Baza Basin, SE Spain), Fuente Nueva 3 (1.3 Ma) and Barranco León (1.4 Ma), preserve some of the earliest evidences of human presence in the European continent. During the 2013 field season, a small Lyncodontini mustelid mandible was found at Fuente Nueva-3. This finding was accompanied by a lower canine (c1), also from the same site, and a lower fourth premolar (p4) from Barranco León. Here, we report on the morphological and biometrical study of these materials, in comparison to other Eurasian Pliocene-Pleistocene species of the tribe Lyncodontini. The analyses revealed an affinity between the taxon from Fuente Nueva-3 and Barranco León with the small-sized European species Martellictis ardea (Gervais, 1848-1852), allowing us to ascribe the described material to the latter species. The presence of M. ardea in the sites of Orce is the southernmost occurrence of the species in the Iberian Peninsula and an important finding in the scarce fossil record of Lyncodontini in Europe

Hydrological heterogeneity in Mediterranean reclaimed slopes: runoff and sediment yield at the patch and slope scales along a gradient of overland flow

Hydrological heterogeneity is recognized as a fundamental ecosystem attribute in drylands controlling the flux of water and energy through landscapes. Therefore, mosaics of runoff and sediment source patches and sinks are frequently identified in these dry environments. There is a remarkable scarcity of studies about hydrological spatial heterogeneity in restored slopes, where ecological succession and overland flow are interacting. We conducted field research to study the hydrological role of patches and slopes along an "overland flow gradient" (gradient of overland flow routing through the slopes caused by different amounts of run-on coming from upslope) in three reclaimed mining slopes of Mediterranean-continental climate. We found that runoff generation and routing in non-rilled slopes showed a pattern of source and sink areas of runoff. Such hydrological microenvironments were associated with seven vegetation patches (characterized by plant community types and cover). Two types of sink patches were identified: shrub Genista scorpius patches could be considered as "deep sinks", while patches where the graminoids Brachypodium retusum and Lolium perenne dominate were classified as "surface sinks" or "runoff splays". A variety of source patches were also identified spanning from "extreme sources" (Medicago sativa patches; equivalent to bare soil) to "poor sources" (areas scattered by dwarf-shrubs of Thymus vulgaris or herbaceous tussocks of Dactylis glomerata). Finally, we identified the volume of overland flow routing along the slope as a major controlling factor of "hydrological diversity" (heterogeneity of hydrological behaviours quantified as Shannon diversity index): when overland flow increases at the slope scale hydrological diversity diminishes

Structural and functional control of surface-patch to hillslope runoff and sediment connectivity in Mediterranean dry reclaimed slope systems

Connectivity has emerged as a useful concept for exploring the movement of water and sediments between landscape locations and across spatial scales. In this study, we examine the structural and functional controls of surfacepatch to hillslope runoff and sediment connectivity in three Mediterranean dry reclaimed mining slope systems that have different long-term development levels of vegetation and rill networks. Structural connectivity was assessed using flow path analysis of coupled vegetation distribution and surface topography, providing field indicators of the extent to which surface patches that facilitate runoff and sediment production are physically linked to one another in the studied hillslopes. Functional connectivity was calculated using the ratio of patch-scale to hillslope-scale observations of runoff and sediment yield for 21 monitored hydrologically active rainfall events. The impact of the dynamic interactions between rainfall conditions and structural connectivity on functional connectivity were further analysed using general linear models with a backward model structure selection approach. Functional runoff connectivity during precipitation events was found to be dynamically controlled by antecedent precipitation conditions and rainfall intensity and strongly modulated by the structural connectivity of the slopes. On slopes without rills, both runoff and sediments for all events were largely redistributed within the analysed hillslopes, resulting in low functional connectivity. Sediment connectivity increased with rainfall intensity, particularly in the presence of rill networks where active incision under high-intensity storm conditions led to large non-linear increases in sediment yield from the surface-patch to the hillslope scales. Overall, our results demonstrate the usefulness of applying structuraland functional-connectivity metrics for practical applications and for assessing the complex links and controlling factors that regulate the transference of both surface water and sediments across different landscape scales

Epidemic dynamics in open quantum spin systems

We explore the non-equilibrium evolution and stationary states of an open many-body system which displays epidemic spreading dynamics in a classical and a quantum regime. Our study is motivated by recent experiments conducted in strongly interacting gases of highly excited Rydberg atoms where the facilitated excitation of Rydberg states competes with radiative decay. These systems approximately implement open quantum versions of models for population dynamics or disease spreading where species can be in a healthy, infected or immune state. We show that in a two-dimensional lattice, depending on the dominance of either classical or quantum effects, the system may display a different kind of non-equilibrium phase transition. We moreover discuss the observability of our findings in laser driven Rydberg gases with particular focus on the role of long-range interactions

Herbivores, saprovores and natural enemies respond differently to within-field plant characteristics of wheat fields

Understanding ecosystem functioning in a farmland context by considering the variety of ecological strategies employed by arthropods is a core challenge in ecology and conservation science. We adopted a functional approach in an assessment of the relationship between three functional plant groups (grasses, broad-leaves and legumes) and the arthropod community in winter wheat fields in a Mediterranean dryland context. We sampled the arthropod community as thoroughly as possible with a combination of suction catching and flight-interception trapping. All specimens were identified to the appropriate taxonomic level (family, genus or species) and classified according to their form of feeding: chewing-herbivores, sucking-herbivores, flower-consumers, omnivores, saprovores, parasitoids or predators. We found, a richer plant community favoured a greater diversity of herbivores and, in turn, a richness of herbivores and saprovores enhanced the communities of their natural enemies, which supports the classical trophic structure hypothesis. Grass cover had a positive effect on sucking-herbivores, saprovores and their natural enemies and is probably due to grasses’ ability to provide, either directly or indirectly, alternative resources or simply by offering better environmental conditions. By including legumes in agroecosystems we can improve the conservation of beneficial arthropods like predators or parasitoids, and enhance the provision of ecosystem services such as natural pest controlPeer ReviewedPostprint (author's final draft