A new approach to model oxygen dependent benthic phosphate fluxes in the Baltic Sea

Highlights • A new description of sediment phosphorus dynamics was implemented in a 3D-model. • Oxygen consumption affects oxygen penetration in coastal sediments. • Low oxygen concentrations determine the oxygen penetration in deeper water sediments. • More than 80% of the phosphorus loads (1980–2008) are retained in the Baltic Sea. • Phosphorus is released from anoxic sediments and retained in oxic sediments. Abstract The new approach to model the oxygen dependent phosphate release by implementing formulations of the oxygen penetration depths (OPD) and mineral bound inorganic phosphorus pools to the Swedish Coastal and Ocean Biogeochemical model (SCOBI) is described. The phosphorus dynamics and the oxygen concentrations in the Baltic proper sediment are studied during the period 1980–2008 using SCOBI coupled to the 3D-Rossby Centre Ocean model. Model data are compared to observations from monitoring stations and experiments. The impact from oxygen consumption on the determination of the OPD is found to be largest in the coastal zones where also the largest OPD are found. In the deep water the low oxygen concentrations mainly determine the OPD. Highest modelled release rate of phosphate from the sediment is about 59 × 103 t P year− 1 and is found on anoxic sediment at depths between 60–150 m, corresponding to 17% of the Baltic proper total area. The deposition of organic and inorganic phosphorus on sediments with oxic bottom water is larger than the release of phosphorus, about 43 × 103 t P year− 1. For anoxic bottoms the release of total phosphorus during the investigated period is larger than the deposition, about 19 × 103 t P year− 1. In total the net Baltic proper sediment sink is about 23.7 × 103 t P year− 1. The estimated phosphorus sink efficiency of the entire Baltic Sea is on average about 83% during the period

Decreased expression of genes involved in oxidative phosphorylation in human pancreatic islets from patients with type 2 diabetes

Objective: Gene expression alterations, especially in target tissues of insulin, have been associated with type 2 diabetes (T2D). In this study, we examined if genes involved in oxidative phosphorylation (OXPHOS) show differential gene expression and DNA methylation in pancreatic islets from patients with T2D compared with non-diabetic donors. Design and methods: Gene expression was analyzed in human pancreatic islets from 55 non-diabetic donors and nine T2D donors using microarray. Results: While the expected number of OXPHOS genes with reduced gene expression is 7.21, we identified 21 downregulated OXPHOS genes in pancreatic islets from patients with T2D using microarray analysis. This gives a ratio of observed over expected OXPHOS genes of 26.37 by a χ-test with P=2.81 × 10. The microarray data was validated by qRT-PCR for four selected OXPHOS genes: NDUFA5, NDUFA10, COX11, and ATP6V1H. All four OXPHOS genes were significantly downregulated in islets from patients with T2D compared with non-diabetic donors using qRT-PCR (P≤0.01). Furthermore, HbAlc levels correlated negatively with gene expression of NDUFA5, COX11, and ATP6V1H (

Pregnancy to postpartum transition of serum metabolites in women with gestational diabetes

Context Gestational diabetes is commonly linked to development of type 2 diabetes mellitus (T2DM). There is a need to characterize metabolic changes associated with gestational diabetes in order to find novel biomarkers for T2DM. Objective To find potential pathophysiological mechanisms and markers for progression from gestational diabetes mellitus to T2DM by studying the metabolic transition from pregnancy to postpartum. Design The metabolic transition profile from pregnancy to postpartum was characterized in 56 women by mass spectrometry-based metabolomics; 11 women had gestational diabetes mellitus, 24 had normal glucose tolerance, and 21 were normoglycaemic but at increased risk for gestational diabetes mellitus. Fasting serum samples collected during trimester 3 (gestational week 32 ± 0.6) and postpartum (10.5 ± 0.4 months) were compared in diagnosis-specific multivariate models (orthogonal partial least squares analysis). Clinical measurements (e.g., insulin, glucose, lipid levels) were compared and models of insulin sensitivity and resistance were calculated for the same time period. Results Women with gestational diabetes had significantly increased postpartum levels of the branched-chain amino acids (BCAAs) leucine, isoleucine, and valine, and their circulating lipids did not return to normal levels after pregnancy. The increase in BCAAs occurred postpartum since the BCAAs did not differ during pregnancy, as compared to normoglycemic women. Conclusions Postpartum levels of specific BCAAs, notably valine, are related to gestational diabetes during pregnancy

UK hazards from a large Icelandic effusive eruption. Effusive Eruption Modelling Project final report

In response to the recent introduction of large, long-lasting gas-rich volcanic eruptions to the UK National Risk Register (risk H55) a modelling project has been conducted to improve our understanding of potential hazards to the UK from such an eruption on Iceland. A precautionary “reasonable worst case” eruption scenario based on the 1783-1784 CE Laki eruption has been determined using the results of an expert elicitation of scientists. This scenario has been simulated 80 times using two different atmospheric chemistry and transport models (NAME and EMEP4UK) over 10 years of meteorology (2003-2012). The results provide information on the range of concentrations of sulphur dioxide (SO2), sulphate aerosol (SO4) and some halogen species that might be experienced in the UK during such an eruption and the likelihood of key thresholds being exceeded and the duration of their exceedance. Data for the surface and for a range of key flight altitudes have been produced. These are evaluated against the threshold bandings of the UK’s Air Quality Index (AQI). The impact on UK ecosystems has also been considered. The data are intended to be used by UK Government Departments for further research into the impacts on the aviation, health, environmental and agricultural sectors. The results show that the prevailing meteorological conditions are the key influence on which parts of the North Atlantic and European region are affected at any time. The results demonstrate that the UK is unlikely to be affected by week after week of significantly elevated concentrations; rather there will a number of short (hours to days) pollution episodes where concentrations at the surface would be elevated bove Moderate and High air quality index levels. This pattern reflects the generally changeable nature of the weather in the UK. At the surface, consecutive exceedance durations are longer for SO4 than SO2, and can be particularly lengthy (1-2 weeks) in the Low air quality index levels, which may be of relevance to health impact assessments. The indications of potential peak concentrations and their corresponding AQI exceedance probabilities within this report serve to inform national, high-level generic risk planning. For more specific response planning, a much larger modelling study with multiple eruption scenarios and a greater number of meteorological realisations would be needed

Modelling and mapping of exceedance of critical loads and critical levels for acidification and eutrophication in the UK 2013-2016. Final report

This report covers the work of the original contract (2013-15) and the following one-year extension (2015-16). The overall purpose of this project was to maintain, and where appropriate update, the UK critical loads database, and to provide estimates of critical load and critical level exceedance based on current pollutant deposition or concentrations, and scenarios for the future. The exceedance results were used to inform policy makers on the areas of sensitive habitats and designated sites potentially at risk from air pollution and were updated annually to provide a UK indicator of the impacts of air pollution on ecosystems. The project also supported the UK National Focal Centre (NFC) for critical loads modelling and mapping. The 1-year extension to this contract additionally included the biodiversity modelling required to enable the UK NFC to begin work in preparation for responding to the 2015-17 “Call for Data” under the UNECE Convention on Long-Range Transboundary Air Pollution (CLRTAP)

Dietary intake of n-3 long-chain polyunsaturated fatty acids and risk of myocardial infarction in coronary artery disease patients with or without diabetes mellitus: a prospective cohort study

Background: A beneficial effect of a high n-3 long-chain polyunsaturated fatty acid (LCPUFA) intake has been observed in heart failure patients, who are frequently insulin resistant. We investigated the potential influence of impaired glucose metabolism on the relation between dietary intake of n-3 LCPUFAs and risk of acute myocardial infarction (AMI) in patients with coronary artery disease. Methods: This prospective cohort study was based on the Western Norway B-Vitamin Intervention Trial and included 2,378 patients with coronary artery disease with available baseline glycosylated hemoglobin (HbA1c) and dietary data. Patients were sub-grouped as having no diabetes (HbA1c <5.7%), pre-diabetes (HbA1c ≥5.7%), or diabetes (previous diabetes, fasting baseline serum glucose ≥7.0, or non-fasting glucose ≥11.1 mmol/L). AMI risk was evaluated by Cox regression (age and sex adjusted), comparing the upper versus lower tertile of daily dietary n-3 LCPUFA intake. Results: The participants (80% males) had a mean age of 62 and follow-up of 4.8 years. A high n-3 LCPUFA intake was associated with reduced risk of AMI (hazard ratio 0.38, 95%CI 0.18, 0.80) in diabetes patients (median HbA1c = 7.2%), whereas no association was observed in pre-diabetes patients. In patients without diabetes a high intake tended to be associated with an increased risk (hazard ratio1.45, 95%CI 0.84, 2.53), which was significant for fatal AMI (hazard ratio 4.79, 95%CI 1.05, 21.90) and associated with lower HbA1c (mean ± standard deviation 4.55 ±0.68 versus 4.92 ±0.60, P = 0.02). No such differences in HbA1c were observed in those with pre-diabetes or diabetes. Conclusions: A high intake of n-3 LCPUFAs was associated with a reduced risk of AMI, independent of HbA1c, in diabetic patients, but with an increased risk of fatal AMI and lower HbA1c among patients without impaired glucose metabolism. Further studies should investigate whether patients with diabetes may benefit from having a high intake of n-3 LCPUFAs and whether patients with normal glucose tolerance should be careful with a very high intake of these fatty acids.publishedVersio

Hundreds of variants clustered in genomic loci and biological pathways affect human height

Most common human traits and diseases have a polygenic pattern of inheritance: DNA sequence variants at many genetic loci influence the phenotype. Genome-wide association (GWA) studies have identified more than 600 variants associated with human traits, but these typically explain small fractions of phenotypic variation, raising questions about the use of further studies. Here, using 183,727 individuals, we show that hundreds of genetic variants, in at least 180 loci, influence adult height, a highly heritable and classic polygenic trait. The large number of loci reveals patterns with important implications for genetic studies of common human diseases and traits. First, the 180 loci are not random, but instead are enriched for genes that are connected in biological pathways (P = 0.016) and that underlie skeletal growth defects (P < 0.001). Second, the likely causal gene is often located near the most strongly associated variant: in 13 of 21 loci containing a known skeletal growth gene, that gene was closest to the associated variant. Third, at least 19 loci have multiple independently associated variants, suggesting that allelic heterogeneity is a frequent feature of polygenic traits, that comprehensive explorations of already-discovered loci should discover additional variants and that an appreciable fraction of associated loci may have been identified. Fourth, associated variants are enriched for likely functional effects on genes, being over-represented among variants that alter amino-acid structure of proteins and expression levels of nearby genes. Our data explain approximately 10% of the phenotypic variation in height, and we estimate that unidentified common variants of similar effect sizes would increase this figure to approximately 16% of phenotypic variation (approximately 20% of heritable variation). Although additional approaches are needed to dissect the genetic architecture of polygenic human traits fully, our findings indicate that GWA studies can identify large numbers of loci that implicate biologically relevant genes and pathways.

Coccidian Infection Causes Oxidative Damage in Greenfinches

The main tenet of immunoecology is that individual variation in immune responsiveness is caused by the costs of immune responses to the hosts. Oxidative damage resulting from the excessive production of reactive oxygen species during immune response is hypothesized to form one of such costs. We tested this hypothesis in experimental coccidian infection model in greenfinches Carduelis chloris. Administration of isosporan coccidians to experimental birds did not affect indices of antioxidant protection (TAC and OXY), plasma triglyceride and carotenoid levels or body mass, indicating that pathological consequences of infection were generally mild. Infected birds had on average 8% higher levels of plasma malondialdehyde (MDA, a toxic end-product of lipid peroxidation) than un-infected birds. The birds that had highest MDA levels subsequent to experimental infection experienced the highest decrease in infection intensity. This observation is consistent with the idea that oxidative stress is a causative agent in the control of coccidiosis and supports the concept of oxidative costs of immune responses and parasite resistance. The finding that oxidative damage accompanies even the mild infection with a common parasite highlights the relevance of oxidative stress biology for the immunoecological research