Upstream dam impacts on gilded catfish Brachyplatystoma rousseauxii (Siluriformes: Pimelodidae) in the Bolivian Amazon

This paper explores the effects of two run-of-river dams (Jirau and Santo Antônio) built in cascade in the middle Madeira River (Brazil) on the interruption of long-distance migration routes of the gilded catfish (Brachyplatystoma rousseauxii). A participative monitoring system was set up to compare capture by commercial fishers approximately 1500 km upstream ofthe dams in Bolivia, before (1998-2007) and after (2015-2017) dam closure. A significant decrease in gilded catfish catches and in catch per unit effort was observed after dam closure, whereas no significant difference in mean weight was found. Back-estimation of age suggests that the few individuals remaining after dam closure in 2009 are a mixture of old homers that returned upstream before dam closure, and residents hatched after dam closure and trapped in the upper Madeira. Unless fishways in the Madeira River dams improve their efficiency, the gilded catfish might become rare and in danger of regional extinction in the upper Madeira basin in the next few years, negatively affecting river fisheries.Fil: Van Damme, Paul A.. Instituto de Investigación Aplicada de Recursos Acuáticos; Bolivia. Universidad Mayor de San Simón; BoliviaFil: Córdova Clavijo, Leslie. Instituto de Investigación Aplicada de Recursos Acuáticos; BoliviaFil: Baigún, Claudio Rafael M.. Universidad Nacional de San Martín. Instituto de Investigación e Ingeniería Ambiental. - Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigación e Ingeniería Ambiental; ArgentinaFil: Hauser, Marilia. Universidade Federal de Rondônia; Brasil. Centre National de la Recherche Scientifique. Institut de Recherche pour le Développement; FranciaFil: da Costa Doria, Carolina R.. Centre National de la Recherche Scientifique. Institut de Recherche pour le Développement; Francia. Universidade Federal de Rondônia; BrasilFil: Duponchelle, Fabrice. Universidade Federal de Rondônia; Brasi

Commercial traceability of <i>Arapaima</i> spp. fisheries in the Amazon basin: can biogeochemical tags be useful?

The development of analytical tools to determine the origin of fishes is useful to better understand patterns of habitat use and to monitor, manage, and control fisheries, including certification of food origin. The application of isotopic analyses to study calcified structures of fishes (scales, vertebrae, and otoliths) may provide robust information about the fish geographic origin and environmental living conditions. In this study, we used Sr and C isotopic markers recorded in otoliths of wild and farmed commercialized pirarucu (Arapaima spp.) to evaluate their prediction potential to trace the fishes origin. Wild and farmed fish specimens, as well as food used for feeding pirarucu in captivity, were collected from different sites. Isotope composition of otoliths performed by isotope-ratio mass spectrometry (IRMS; δ13C) and femtosecond laser ablation multi-collector inductively coupled plasma mass spectrometry (LAfs-MC-ICPMS; 87Sr∕86Sr) were compared to the isotopic composition of water and of the food given to the fishes in the farms. Wild fish specimens that lived in environments with the largest fluctuation of river water Sr isotope ratios over time presented the largest Sr isotope variations in otoliths. A quadratic discriminant analysis on otolith isotopic composition provided 58&thinsp;% of correct classification for fish production (wild and farmed) and 76&thinsp;% of correct classification for the fish region. Classification accuracy for region varied between 100&thinsp;% and 29&thinsp;% for the Madeira and the Lower Amazon fishes, respectively. Overall, this preliminary trial is not yet fully developed to be applied as a commercial traceability tool. However, given the importance of Arapaima spp. for food security and the generation of economic resources for millions of people in the Amazon basin, further analyses are needed to increase the discrimination performance of these biogeographical tags.</p

Commercial traceability of <i>Arapaima</i> spp. fisheries in the Amazon basin: can biogeochemical tags be useful?

The development of analytical tools to determine the origin of fishes is useful to better understand patterns of habitat use and to monitor, manage, and control fisheries, including certification of food origin. The application of isotopic analyses to study calcified structures of fishes (scales, vertebrae, and otoliths) may provide robust information about the fish geographic origin and environmental living conditions. In this study, we used Sr and C isotopic markers recorded in otoliths of wild and farmed commercialized pirarucu (Arapaima spp.) to evaluate their prediction potential to trace the fishes origin. Wild and farmed fish specimens, as well as food used for feeding pirarucu in captivity, were collected from different sites. Isotope composition of otoliths performed by isotope-ratio mass spectrometry (IRMS; δ13C) and femtosecond laser ablation multi-collector inductively coupled plasma mass spectrometry (LAfs-MC-ICPMS; 87Sr∕86Sr) were compared to the isotopic composition of water and of the food given to the fishes in the farms. Wild fish specimens that lived in environments with the largest fluctuation of river water Sr isotope ratios over time presented the largest Sr isotope variations in otoliths. A quadratic discriminant analysis on otolith isotopic composition provided 58&thinsp;% of correct classification for fish production (wild and farmed) and 76&thinsp;% of correct classification for the fish region. Classification accuracy for region varied between 100&thinsp;% and 29&thinsp;% for the Madeira and the Lower Amazon fishes, respectively. Overall, this preliminary trial is not yet fully developed to be applied as a commercial traceability tool. However, given the importance of Arapaima spp. for food security and the generation of economic resources for millions of people in the Amazon basin, further analyses are needed to increase the discrimination performance of these biogeographical tags.</p

Age and growth of the Amazonian migratory catfish Brachyplatystoma rousseauxii in the Madeira River basin before the construction of dams

The goliath catfish Brachyplatystoma rousseauxii has crucial economical and ecological functions in the Amazon basin. Although its life history characteristics have been studied in the Amazon, there is little information in the Madeira River basin, which holds genetically distinct populations and where dams were recently built. Using fish collected in Bolivia, Brazil and Peru, this study provides a validation of growth rings deposition and details the growth patterns of B. rousseauxii in the Madeira before the dams' construction. Age structure and growth parameters were determined from 497 otolith readings. The species exhibits two growth rings per year and sampled fish were between 0 and 16 years old. In the Brazilian portion of the basin, mainly young individuals below 5 years old were found, whereas older fish (> 5 years) were caught only in the Bolivian and Peruvian stretches, indicating that after migrating upstream to reproduce, adults remain in the headwaters of the Madeira River. Comparing with previous publications, B. rousseauxii had a slower growth and 20 cm lower maximum standard length in the Madeira River than in the Amazon River. This study provides a baseline for future evaluation of changes in population dynamics of the species following dams closure.Santo Antonio Energia (SAE)Universidade Federal de Rondonia (UNIR)Instituto de Estudos e Pesquisas Agroambientais e Organizacoes Sustentaveis (IEPAGRO)CAPES [1402376, 047/2012, 6632/14-9]CNPq [204344/2015-8]Foundation of Support to Research of the Amazon [PAREV/FAPEAM 019/2010]FAPESP (Sao Paulo Research Foundation) [2016/07910-0]Univ Fed Rondonia UNIR, Dept Biol, Lab Ictiol & Pesca, BR 364,Km 9,5, BR-76801059 Porto Velho, RO, BrazilPrograma Posgrad Rede Biodiversidade & Biotechnol, BR 364,Km 9,5, BR-76801059 Porto Velho, RO, BrazilUAGRM, IRD, IIAP, LMI,EDIA, Montpellier, FranceINPA, Av Andre Araujo 2936, BR-69067375 Manaus, AM, BrazilUniv Fed Alagoas UFAL, Av Lourival Melo Mota,S-N Tabuleiro Martins, BR-57072900 Maceio, AL, BrazilUniv Fed Sao Paulo, Rua Doutor Carvalho Mendonca 144, BR-11070100 Santos, SP, BrazilUniv Fed Amazonas, Av Gen Rodrigo Octavio Jordao Ramos 3000, BR-69077000 Manaus, AM, BrazilIIAP, Vv Jose Quinones Km 2-5,Apartado Postal 784, Iquitos, PeruIRD, UMR BOREA, MNHN, CNRS 7208,SU,UCN,UA,IRD 207, Ave Agropolis 911, F-34394 Montpellier, FranceUMSS, ULRA, FAUNAGUA, ECOSINTEGRALES SRL, Ave Max Fernandez Final S-N, Cochabamba, BoliviaECOSINTEGRALES SRL, Res Act, Carlos Muller St 211, Cochabamba, Cercado, BoliviaInst Amazon Invest Cient SINCHI, Ave Vasquez Cobo Entre Calles 15 & 16, Bogota, ColombiaUniv Fed Sao Paulo, Rua Doutor Carvalho Mendonca 144, BR-11070100 Santos, SP, BrazilCAPES [1402376, 047/2012, 6632/14-9]CNPq [204344/2015-8][PAREV/FAPEAM 019/2010]FAPESP [2016/07910-0]Web of Scienc

6. Peces amazónicos y cambio climático

Con el 15% de todos los peces de agua dulce descritos en el mundo, la cuenca amazónica es el sistema de agua dulce más biodiverso del planeta. Hoy en día, los factores principales de degradación de los ecosistemas de agua dulce en la región amazónica son la rápida expansión de las infraestructuras y actividades económicas. Estas perturbaciones provocan importantes efectos negativos en las comunidades de peces y podrían verse amplificados por los impactos del cambio climático. Las pérdidas de hábitat originados por el cambio climático no deberían tener efectos sobre las tasas de extinción de la especies. Sin embargo, el estrés térmico y la limitación de oxígeno podrían provocar extinciones locales de ciertas especies y producir cambios progresivos en la estructura y composición de las comunidades actuales de peces. Las especies tolerantes al aumento de temperatura, como el Paiche, se expandirán mientras que las especies sensibles a este aumento se reducirán. Cabe destacar que hoy en día las acciones de conservación deben enfocarse en la reducción de los efectos de las amenazas antropogénicas en curso.Avec 15% de tous les poissons d'eau douce décrits dans le monde, le bassin amazonien est le système d'eau douce présentant la plus grande biodiversité de la planète. Aujourd'hui, les principaux facteurs de dégradation des écosystèmes d'eau douce dans la région amazonienne sont l'expansion rapide des infrastructures et les activités économiques. Ces perturbations provoquent d'importants effets négatifs sur les communautés de poissons et pourraient être amplifiés par les impacts du changement climatique. La perte d'habitat due au changement climatique ne devrait avoir aucun effet sur les taux d'extinction des espèces. Cependant, le stress lié à la température et la limitation de l'oxygène pourraient provoquer l'extinction locale de certaines espèces et produire des changements progressifs dans la structure et la composition des communautés actuelles de poissons. Les populations d'espèces tolérantes à l'augmentation de température, comme le Paiche, augmenteront, tandis que les populations d'espèces sensibles à cette augmentation diminueront. Il est important de noter que, à l'heure actuelle, les actions de conservation doivent se concentrer sur la réduction des effets des menaces anthropiques en cours.With 15% of all described freshwater fish in the world, the Amazon basin is the most biodiverse freshwater System of the planet. Nowadays, the main factors of degradation of freshwater ecosystems in the Amazon region are the rapid expansion of infrastructure and economic activities. These disturbances cause negative effects on fish communities and could be amplified by the impacts of climate change. Loss of habitat due to climate change should have no effect on rates of species extinction. However, thermal stress and oxygen limitation could cause local extinctions of certain species and produce Progressive changes in the structure and composition of existing fish communities. Tolerant species to temperature increase -as the Paiche- should expand, while sensitive species should be reduced. It is noteworthy that conservation actions should focus on reducing the effects of anthropogenic threats in progress

Parallel Evolution of a Type IV Secretion System in Radiating Lineages of the Host-Restricted Bacterial Pathogen Bartonella

Adaptive radiation is the rapid origination of multiple species from a single ancestor as the result of concurrent adaptation to disparate environments. This fundamental evolutionary process is considered to be responsible for the genesis of a great portion of the diversity of life. Bacteria have evolved enormous biological diversity by exploiting an exceptional range of environments, yet diversification of bacteria via adaptive radiation has been documented in a few cases only and the underlying molecular mechanisms are largely unknown. Here we show a compelling example of adaptive radiation in pathogenic bacteria and reveal their genetic basis. Our evolutionary genomic analyses of the α-proteobacterial genus Bartonella uncover two parallel adaptive radiations within these host-restricted mammalian pathogens. We identify a horizontally-acquired protein secretion system, which has evolved to target specific bacterial effector proteins into host cells as the evolutionary key innovation triggering these parallel adaptive radiations. We show that the functional versatility and adaptive potential of the VirB type IV secretion system (T4SS), and thereby translocated Bartonella effector proteins (Beps), evolved in parallel in the two lineages prior to their radiations. Independent chromosomal fixation of the virB operon and consecutive rounds of lineage-specific bep gene duplications followed by their functional diversification characterize these parallel evolutionary trajectories. Whereas most Beps maintained their ancestral domain constitution, strikingly, a novel type of effector protein emerged convergently in both lineages. This resulted in similar arrays of host cell-targeted effector proteins in the two lineages of Bartonella as the basis of their independent radiation. The parallel molecular evolution of the VirB/Bep system displays a striking example of a key innovation involved in independent adaptive processes and the emergence of bacterial pathogens. Furthermore, our study highlights the remarkable evolvability of T4SSs and their effector proteins, explaining their broad application in bacterial interactions with the environment