Evaluation of the Ecosystem Services of the Central Marsh in Southern Iraq

Ecosystems provide humans with services that include benefits from food, fresh water, climate regulation, and socio-economic assets. The Mesopotamian marshlands are among the largest wetlands in the Middle East and they provide various benefits. However, ecosystem services of the Marshlands are consistently undervalued in national economic analysis and decision making. This study focusses on the Central Marshes, the first National Park in Iraq, and is the first attempt at valuing a series of ecosystem services from a valuable natural ecosystem in Iraq. We adopted the Toolkit for Ecosystem Services Site-Based Assessment (TESSA) for the determination of biophysical and economic values of services at the site level. Data on key ecosystem services (as determined by 30 interviews with residents of the Marshes) included the trading of fish, harvested plants, water buffalo milk, and fodder were collected across six months in 2014. We valued the ecosystem services within the CM (40,000 ha) over a 6-month period to have a total value of 860,078.23 USD. This estimated total value was the sum of 86,637.25 USD from harvested plants, 551,334.80 USD from trading fish, 167, 303.70 USD from trading water buffalo milk, and 54,804.00 USD from trading fodder. The average income per individual in Iraq in 2014 was 6720 USD (World Bank data - https://data.worldbank.org/country/iraq): thus, the CM provided an average salary for 256 people. Our results provided greater understanding of the ecosystem services contributed by the Central Marshes and has highlighted the crucial role of nature in supporting sustainable well-being for humans living in the area. In addition, the results can be used to enhance local policy, to aid management plans of the National park, and to estimate lost and damage that could result from impact of climate change on the area

Pollution threatens water quality in the Central Marshes of Southern Iraq

تلوث المياه مشكلة يمكن أن تتفاقم بسبب الجفاف مع زيادة تراكيز المواد غير المرغوب فيها. توفر الاهوار الطبيعية إمكانية تحسين جودة المياه وهنا نقدم أدلة على هذه الخدمة بناءً على تدفق المياه من نهر الفرات (الذي عانى من انخفاض كبير في التدفق) إلى الأهوار في جنوب العراق. تم إنشاء سدة ترابية في عام 2010 على نهر الفرات لمنع المياه التي يقل ارتفاعها عن 1.7 متر من المرور من محافظة ذي قار (الجبايش) إلى محافظة البصرة (المدَينه) كاستجابة للجفاف الشديد الذي واجه المنطقة في عامي 2009 و 2010. ونتيجة لذلك ، أصبحت الاهوار الوسطى في الجبايش موقعا نهائيا (بدون منفذ) الى كل مياه نهر الفرات التي تاتي من غرب العراق محملة بمختلف الملوثات والنفايات الزراعية. تم اختبار قدرة الاهوار الوسطى على العمل كبالوعة لتقليل تراكم العناصر الغذائية (NO2 ، NO3 ، PO4) ، والملوحة ، والأيونات الرئيسة ، والمعادن الثقيلة (Cu ، Ni ، Pb ، Cd ، Zn) في نهر الفرات. قسمت منطقة الدراسة إلى أربع مناطق أفقية (النهر وثلاث مناطق داخل الهور) وأجريت ثمانية مسوحات ميدانية من تشرين الثاني 2013 إلى حزيران 2014 لجمع عينات المياه باستخدام منهجية الخط المستقيم (transect line methodology). كانت الملوحة والأيونات الرئيسية أعلى بشكل معنوي داخل الهور مقارنة بالنهر. ومع ذلك ، لم يتم العثور على اختلافات بين قيم المغذيات في النهر والهور مما يشير إلى أن دور الهور للعمل كبالوعة لهذه المواد كان محدودا  وان تراكم الملوثات وتركيزها كان اكثر في داخل الهور منه الى المناطق القريبة للنهر. لذلك فإن التراكم طويل الأمد يشكل تحديًا كبيرًا يواجه الهور في ظل ظروف شحة المياه في نهر الفرات ، وهذا يتطلب اهتمامًا عاجلاً ، خاصة بالنظر إلى مكانة الموقع كموقع للتراث العالمي (لخدمات النظم الطبيعية المقدمة للسكان المحليين) وكمنطقة تنوع بيولوجي مهمة. ملف ملحقWater pollution is an issue that can be exacerbated by drought as increased concentrations of unwanted substances are a consequence of lower water levels. Polluted water that flows into natural marshlands leads to the deposition of pollutants in the interior of the marsh. Here we present evidence that the interior of the Central Marsh (CM) in southern Iraq suffers from higher levels of pollution than areas closer to the source of water entering the marsh (the Euphrates River). A 1.7m embankment that halts the flow of the Euphrates is only infrequently breached and so the CM is effectively the terminal destination of the waters (and their associated pollutants and agricultural waste) flowing from the West of Iraq. A range of water quality metrics were measured where the Euphrates enters the CM and at increasing distances into the interior of the CM. The following measures were taken:  NO2, NO3, PO4 , Salinity, Major ions, and Heavy Metals (Cu, Ni, Pb, Cd, Zn). The area of study was divided into four horizontal zones (the river and three zones inside the marsh) and eight field surveys were carried out from November 2013 to June 2014 to collect water samples by using a transect line methodology.  Salinity and major ions (Na, K, Cl, Ca, and Mg) were significantly higher inside the marsh compared with levels in the river water immediately before it entered the CM.  These findings indicate  the increased risk of these pollutants to humans and wildlife living in and using the CM.  This issue  requires urgent attention, especially to the status of the CM as a World Heritage site (for the ecosystem services provided to local people) as an Important Biodiversity Area. The reported declines in water quantity in the Euphrates over recent decades will likely further exacerbate the problems we report. Supplement fil

Fibronectin rescues estrogen receptor α from lysosomal degradation in breast cancer cells

Estrogen receptor α (ERα) is expressed in tissues as diverse as brains and mammary glands. In breast cancer, ERα is a key regulator of tumor progression. Therefore, understanding what activates ERα is critical for cancer treatment in particular and cell biology in general. Using biochemical approaches and superresolution microscopy, we show that estrogen drives membrane ERα into endosomes in breast cancer cells and that its fate is determined by the presence of fibronectin (FN) in the extracellular matrix; it is trafficked to lysosomes in the absence of FN and avoids the lysosomal compartment in its presence. In this context, FN prolongs ERα half-life and strengthens its transcriptional activity. We show that ERα is associated with β1-integrin at the membrane, and this integrin follows the same endocytosis and subcellular trafficking pathway triggered by estrogen. Moreover, ERα+ vesicles are present within human breast tissues, and colocalization with β1-integrin is detected primarily in tumors. Our work unravels a key, clinically relevant mechanism of microenvironmental regulation of ERα signaling.Fil: Sampayo, Rocío Guadalupe. Universidad Nacional de San Martin. Instituto de Nanosistemas; Argentina. Universidad de Buenos Aires. Facultad de Medicina. Instituto de Oncología "Ángel H. Roffo"; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Toscani, Andrés Martin. Universidad Nacional de Luján; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Rubashkin, Matthew G.. University of California; Estados UnidosFil: Thi, Kate. Lawrence Berkeley National Laboratory; Estados UnidosFil: Masullo, Luciano Andrés. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física de Buenos Aires; ArgentinaFil: Violi, Ianina Lucila. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Centro de Investigaciones en Bionanociencias "Elizabeth Jares Erijman"; ArgentinaFil: Lakins, Jonathon N.. University of California; Estados UnidosFil: Caceres, Alfredo Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra. Universidad Nacional de Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra; ArgentinaFil: Hines, William C.. Lawrence Berkeley National Laboratory; Estados UnidosFil: Coluccio Leskow, Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; Argentina. Universidad Nacional de Luján; ArgentinaFil: Stefani, Fernando Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física de Buenos Aires; ArgentinaFil: Chialvo, Dante Renato. Universidad de Buenos Aires; Argentina. Universidad Nacional de San Martín. Escuela de Ciencia y Tecnología. Centro Internacional de Estudios Avanzados; ArgentinaFil: Bissell, Mina J.. Lawrence Berkeley National Laboratory; Estados UnidosFil: Weaver, Valerie M.. University of California; Estados UnidosFil: Simian, Marina. Universidad Nacional de San Martin. Instituto de Nanosistemas; Argentina. Universidad de Buenos Aires. Facultad de Medicina. Instituto de Oncología "Ángel H. Roffo"; Argentin

Genome-Wide Association Scan for Diabetic Nephropathy Susceptibility Genes in Type 1 Diabetes

OBJECTIVE—Despite extensive evidence for genetic susceptibility to diabetic nephropathy, the identification of susceptibility genes and their variants has had limited success. To search for genes that contribute to diabetic nephropathy, a genome-wide association scan was implemented on the Genetics of Kidneys in Diabetes collection. RESEARCH DESIGN AND METHODS—We genotyped 360,000 single nucleotide polymorphisms (SNPs) in 820 case subjects (284 with proteinuria and 536 with end-stage renal disease) and 885 control subjects with type 1 diabetes. Confirmation of implicated SNPs was sought in 1,304 participants of the Diabetes Control and Complications Trial (DCCT)/Epidemiology of Diabetes Interventions and Complications (EDIC) study, a long-term, prospective investigation of the development of diabetes- associated complications. RESULTS—A total of 13 SNPs located in four genomic loci were associated with diabetic nephropathy with P1105. The strongest association was at the FRMD3 (4.1 protein ezrin, radixin, moesin [FERM] domain containing 3) locus (odds ratio [OR]1.45, P5.0107). A strong association was also identified at the CARS (cysteinyl-tRNA synthetase) locus (OR 1.36, P3.1106). Associations between both loci and time to onset of diabetic nephropathy were supported in the DCCT/EDIC study (hazard ratio [HR]1.33, P0.02, and HR1.32, P 0.01, respectively). We demonstrated expression of both FRMD3 and CARS in human kidney. CONCLUSIONS—We identified genetic associations for susceptibility to diabetic nephropathy at two novel candidate loci near the FRMD3 and CARS genes. Their identification implicates previously unsuspected pathways in the pathogenesis of this important late complication of type 1 diabetes

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Multiorgan MRI findings after hospitalisation with COVID-19 in the UK (C-MORE): a prospective, multicentre, observational cohort study

Introduction: The multiorgan impact of moderate to severe coronavirus infections in the post-acute phase is still poorly understood. We aimed to evaluate the excess burden of multiorgan abnormalities after hospitalisation with COVID-19, evaluate their determinants, and explore associations with patient-related outcome measures. Methods: In a prospective, UK-wide, multicentre MRI follow-up study (C-MORE), adults (aged ≥18 years) discharged from hospital following COVID-19 who were included in Tier 2 of the Post-hospitalisation COVID-19 study (PHOSP-COVID) and contemporary controls with no evidence of previous COVID-19 (SARS-CoV-2 nucleocapsid antibody negative) underwent multiorgan MRI (lungs, heart, brain, liver, and kidneys) with quantitative and qualitative assessment of images and clinical adjudication when relevant. Individuals with end-stage renal failure or contraindications to MRI were excluded. Participants also underwent detailed recording of symptoms, and physiological and biochemical tests. The primary outcome was the excess burden of multiorgan abnormalities (two or more organs) relative to controls, with further adjustments for potential confounders. The C-MORE study is ongoing and is registered with ClinicalTrials.gov, NCT04510025. Findings: Of 2710 participants in Tier 2 of PHOSP-COVID, 531 were recruited across 13 UK-wide C-MORE sites. After exclusions, 259 C-MORE patients (mean age 57 years [SD 12]; 158 [61%] male and 101 [39%] female) who were discharged from hospital with PCR-confirmed or clinically diagnosed COVID-19 between March 1, 2020, and Nov 1, 2021, and 52 non-COVID-19 controls from the community (mean age 49 years [SD 14]; 30 [58%] male and 22 [42%] female) were included in the analysis. Patients were assessed at a median of 5·0 months (IQR 4·2–6·3) after hospital discharge. Compared with non-COVID-19 controls, patients were older, living with more obesity, and had more comorbidities. Multiorgan abnormalities on MRI were more frequent in patients than in controls (157 [61%] of 259 vs 14 [27%] of 52; p<0·0001) and independently associated with COVID-19 status (odds ratio [OR] 2·9 [95% CI 1·5–5·8]; padjusted=0·0023) after adjusting for relevant confounders. Compared with controls, patients were more likely to have MRI evidence of lung abnormalities (p=0·0001; parenchymal abnormalities), brain abnormalities (p<0·0001; more white matter hyperintensities and regional brain volume reduction), and kidney abnormalities (p=0·014; lower medullary T1 and loss of corticomedullary differentiation), whereas cardiac and liver MRI abnormalities were similar between patients and controls. Patients with multiorgan abnormalities were older (difference in mean age 7 years [95% CI 4–10]; mean age of 59·8 years [SD 11·7] with multiorgan abnormalities vs mean age of 52·8 years [11·9] without multiorgan abnormalities; p<0·0001), more likely to have three or more comorbidities (OR 2·47 [1·32–4·82]; padjusted=0·0059), and more likely to have a more severe acute infection (acute CRP >5mg/L, OR 3·55 [1·23–11·88]; padjusted=0·025) than those without multiorgan abnormalities. Presence of lung MRI abnormalities was associated with a two-fold higher risk of chest tightness, and multiorgan MRI abnormalities were associated with severe and very severe persistent physical and mental health impairment (PHOSP-COVID symptom clusters) after hospitalisation. Interpretation: After hospitalisation for COVID-19, people are at risk of multiorgan abnormalities in the medium term. Our findings emphasise the need for proactive multidisciplinary care pathways, with the potential for imaging to guide surveillance frequency and therapeutic stratification

A Major Step Forward in Continuous Miner Automation

Progress on a major research and development project undertaken by the CSIRO Mining Technology Group to advance the automation capability of continuous mining equipment in underground coal mining operations is described. The aim is to increase the overall rate of roadway development as well as providing a safer working environment for underground mine personnel. The outcomes achieved at the half-way mark of this ACARP funded three-year research and development project are reported. Details of the technical developments undertaken towards demonstration of a “self-steering” capability to enable a Continuous Miner to automatically maintain a given mining heading and mining horizon under production conditions are provided. Reported outcomes include the means to accurately determine both the location and orientation of a Continuous Miner in real-time using a combination of a navigation-grade inertial navigation unit, Doppler radar and optical flow technologies. Comprehensive performance evaluations have been conducted using a scaled skid-steer mobility platform and results achieved to the present stage of the project indicate that the required automated self-steering functionality is achievable under production conditions. The project outcomes represent an important move towards achieving a step change improvement in underground roadway development practice

A practical inertial navigation solution for continuous miner automation

The outcomes achieved at the completion of a major industry-funded project undertaken by the CSIRO Mining Technology Group to advance the automation capability of continuous mining equipment in underground coal mining operations are reported. The details of a practical steering and guidance solution for autonomous Continuous Miner operation employing novel inertial navigation aiding techniques are described. The results of navigation performance evaluation using a scaled skid-steer mobility platform completing three segments of a two-heading roadway development pattern under autonomous control are presented. These results represent a significant milestone in achieving a step change improvement in underground roadway development practice

Longwall automation: trends, challenges and opportunities

This paper explores the ongoing development and implementation of longwall automation technology to achieve greater levels of underground coal mining performance. The primary driver behind the research and development effort is to increase the safety, productivity and efficiency of longwall mining operations to enhance the underlying mining business. A brief review of major longwall automation challenges is given followed by a review of the insights and benefits associated with the LASC longwall shearer automation solution. Areas of technical challenge in sensing, decision support, autonomy and human interaction are then highlighted, with specific attention given to remote operating centres, proximity detection and systems-level architectures in order to motivate further automation system development. The vision for a fully integrated coal mining ecosystem is discussed with the goal of delivering a high-performance, zero-exposure and environmentally coherent mining operations. Keywords: Safety, Productivity, Environment, Mining automation, Longwall mining, Remote mining, Sensin