Empleo de análisis de datos a gran escala para evaluar rasgos de historia vital y de comportamiento: el caso de la población de cigüeñas blancas Ciconia ciconia reintroducidas en los Países Bajos

The White stork Ciconia ciconia has been the object of several successful reintroduction programmes in the last decades. As a consequence, populations have been monitored over large spatial scales. Despite these intense efforts, very few reliable estimates of life history traits are available for this species. Such general knowledge however constitutes a prerequisite for investigating the consequences of conservation measures. Using the large–scale and long–term ringing and resighting data set of White storks in the Netherlands, we investigated the variation of survival and resighting rates with age, time and previous individual resighting history, and in a second step supplementary feeding, using capture–recapture models. Providing food did not seem to affect survival directly, but may have an indirect effect via the alteration of migratory behaviour. Large–scale population monitoring is important in obtaining precise and reliable estimates of life history traits and assessing the consequences of conservation measures on these traits, which will prove useful for managers to take adequate measures in future conservation strategies.Durante las últimas décadas, la cigüeña blanca Ciconia ciconia ha sido objeto de diversos y satisfactorios programas de reintroducción, lo que ha permitido controlar poblaciones a grandes escalas espaciales. Pese a la intensidad de tales esfuerzos, se dispone de muy pocas estimaciones fiables acerca de los rasgos de la historia vital de esta especie. No obstante, estos conocimientos generales constituyen un requisito previo para investigar las consecuencias de las medidas de conservación. El empleo de datos de reavistaje y de anillamiento a largo plazo y a gran escala de las cigüeñas blancas de los Países Bajos nos ha permitido investigar la variación en las tasas de supervivencia y de reavistaje según la edad, el tiempo y la historia previa de reavistajes individuales. Asimismo, en una segunda fase, hemos analizado los efectos de la alimentación suplementaria a partir de modelos de captura–recaptura. Parece que la provisión de alimentos no incidió directamente en la supervivencia, pero es posible que tuviera un efecto indirecto como consecuencia de la alteración del comportamiento migratorio. El control de la población a gran escala es fundamental para obtener estimaciones precisas y fiables de rasgos de historia vital, así como para evaluar las consecuencias de las medidas de conservación de dichos rasgos, que resultarán de especial utilidad para los gestores a la hora de emprender iniciativas apropiadas con respecto a las estrategias de conservación futuras

Etude par simulation numérique du retraitement des déchets du T.M.S.R. (Thorium Molten Salt Reactor)

Les réacteurs à sels fondus semblent aujourd'hui présenter une alternative intéressante aux réacteurs de quatrième génération refroidis au sodium. En effet, les réacteurs à sels fondus ont beaucoup évolué depuis le M.S.B.R. (prototype américain de réacteur à sels fondus modéré au graphite et fonctionnant en spectre thermique). Le concept évolue aujourd'hui vers des réacteurs sans modérateur en coeur dont le spectre neutronique s'est considérablement durci par rapport au spectre thermique du M.S.B.R. Ces réacteurs possèdent une unité de retraitement couplée qui permet de purifier le sel et d'optimiser la gestion des déchets rejetés. On espère ainsi définir un retraitement efficace qui minimiserait la radiotoxicité de ce type de réacteur. Ce rapport explique comment on simule l'évolution des réacteurs à sels fondus et on calcule la radiotoxicité des déchets produits. Les résultats donnés ici ne sont qu'indicatifs et servent surtout à monter que les outils et méthodes développés pendant ce stage sont satisfaisants et permettront une étude beaucoup plus poussée lors de la thèse qui suit

Minimizing the fissile inventory of the molten salt fast reactor

International audienceMolten salt reactors in the configurations presented here, called Molten Salt Fast Reactors (MSFR), have been selected for further studies by the Generation IV International Forum. These reactors may be operated in simplified and safe conditions in the Th/233U fuel cycle with fluoride salts. We present here the concept, before focusing on a possible optimization in term of minimization of the initial fissile inventory. Our studies demonstrate that an inventory of 233U lower than 4 metric tons per GWe may be easily reached, and bring to light the limitations of the concept due to the irradiation damages to the structural materials and to the capacities of the heat exchangers. We conclude that these two issues will have to be studied in depth to allow a realistic evaluation of the global possibilities of such a reactor

Win-stay, lose-switch and public information strategies for patch fidelity of songbirds with rare extra-pair paternity

Determining where organisms breed and understanding why they breed in particular locations are fundamental biological questions with conservation implications. Breeding-site fidelity is common in migratory, territorial songbirds and is typically thought to occur following reproductive success with a social mate and success of nearby conspecifics. It is currently unknown if frequency of extra-pair paternity in a population influences use of information about reproductive success of nearby conspecifics for site fidelity decisions. We investigated patch fidelity of white-eyed vireos (Vireo griseus) based on reproductive success and quantified frequency of extra-pair paternity. We found support only for females making patch fidelity decisions following reproductive success with a social mate. Patch fidelity of males was not associated with reproductive success of nearby conspecifics, suggesting males may not use this information when extra-pair paternity is infrequent or the association is non-existent in this species

Collective Animal Behavior from Bayesian Estimation and Probability Matching

Animals living in groups make movement decisions that depend, among other factors, on social interactions with other group members. Our present understanding of social rules in animal collectives is based on empirical fits to observations and we lack first-principles approaches that allow their derivation. Here we show that patterns of collective decisions can be derived from the basic ability of animals to make probabilistic estimations in the presence of uncertainty. We build a decision-making model with two stages: Bayesian estimation and probabilistic matching.
In the first stage, each animal makes a Bayesian estimation of which behavior is best to perform taking into account personal information about the environment and social information collected by observing the behaviors of other animals. In the probability matching stage, each animal chooses a behavior with a probability given by the Bayesian estimation that this behavior is the most appropriate one. This model derives very simple rules of interaction in animal collectives that depend only on two types of reliability parameters, one that each animal assigns to the other animals and another given by the quality of the non-social information. We test our model by obtaining theoretically a rich set of observed collective patterns of decisions in three-spined sticklebacks, Gasterosteus aculeatus, a shoaling fish species. The quantitative link shown between probabilistic estimation and collective rules of behavior allows a better contact with other fields such as foraging, mate selection, neurobiology and psychology, and gives predictions for experiments directly testing the relationship between estimation and collective behavior

Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Indexación: Web of Science; PubMedBackground Berry size is considered as one of the main selection criteria in table grape breeding programs. However, this is a quantitative and polygenic trait, and its genetic determination is still poorly understood. Considering its economic importance, it is relevant to determine its genetic architecture and elucidate the mechanisms involved in its expression. To approach this issue, an RNA-Seq experiment based on Illumina platform was performed (14 libraries), including seedless segregants with contrasting phenotypes for berry weight at fruit setting (FST) and 6–8 mm berries (B68) phenological stages. Results A group of 526 differentially expressed (DE) genes were identified, by comparing seedless segregants with contrasting phenotypes for berry weight: 101 genes from the FST stage and 463 from the B68 stage. Also, we integrated differential expression, principal components analysis (PCA), correlations and network co-expression analyses to characterize the transcriptome profiling observed in segregants with contrasting phenotypes for berry weight. After this, 68 DE genes were selected as candidate genes, and seven candidate genes were validated by real time-PCR, confirming their expression profiles. Conclusions We have carried out the first transcriptome analysis focused on table grape seedless segregants with contrasting phenotypes for berry weight. Our findings contributed to the understanding of the mechanisms involved in berry weight determination. Also, this comparative transcriptome profiling revealed candidate genes for berry weight which could be evaluated as selection tools in table grape breeding programs.http://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0789-

Scale-free memory model for multiagent reinforcement learning. Mean field approximation and rock-paper-scissors dynamics

A continuous time model for multiagent systems governed by reinforcement learning with scale-free memory is developed. The agents are assumed to act independently of one another in optimizing their choice of possible actions via trial-and-error search. To gain awareness about the action value the agents accumulate in their memory the rewards obtained from taking a specific action at each moment of time. The contribution of the rewards in the past to the agent current perception of action value is described by an integral operator with a power-law kernel. Finally a fractional differential equation governing the system dynamics is obtained. The agents are considered to interact with one another implicitly via the reward of one agent depending on the choice of the other agents. The pairwise interaction model is adopted to describe this effect. As a specific example of systems with non-transitive interactions, a two agent and three agent systems of the rock-paper-scissors type are analyzed in detail, including the stability analysis and numerical simulation. Scale-free memory is demonstrated to cause complex dynamics of the systems at hand. In particular, it is shown that there can be simultaneously two modes of the system instability undergoing subcritical and supercritical bifurcation, with the latter one exhibiting anomalous oscillations with the amplitude and period growing with time. Besides, the instability onset via this supercritical mode may be regarded as "altruism self-organization". For the three agent system the instability dynamics is found to be rather irregular and can be composed of alternate fragments of oscillations different in their properties.Comment: 17 pages, 7 figur

Neighbours' Breeding Success and the Sex Ratio of Their Offspring Affect the Mate Preferences of Female Zebra Finches

Several hypotheses on divorce predict that monogamous pairs should split up more frequently after a breeding failure. Yet, deviations from the expected pattern “success-stay, failure-leave” have been reported in several species. One possible explanation for these deviations would be that individuals do not use only their own breeding performance (i.e., private information) but also that of others (i.e., public information) to decide whether or not to divorce. To test this hypothesis, we investigated the relative importance of private and public information for mate choice decisions in female zebra finches (Taeniopygia guttata).We manipulated the reproductive performance of breeding pairs and measured females' preferences for their mate and the neighbouring male first following pair formation and then seven weeks later when all females had laid eggs and the young were independent. Although all females reduced their preference for their mate after a breeding failure, the decrease was significant only when the neighbouring pair had reproduced successfully. Furthermore, there was no evidence that females biased the sex ratio of their offspring according to their mate's attractiveness. On the other hand, after reproduction, both successful and unsuccessful females increased their preferences for males who had produced a larger proportion of sons. Despite the fact that other mechanisms may have also contributed to our findings, we suggest that females changed their mate preferences based on the proportion of sons produced by successful males, because offspring sex ratio reflects the male's testosterone level at the moment of fertilization and hence is an indicator of his immune condition

Translocation as a Novel Approach to Study Effects of a New Breeding Habitat on Reproductive Output in Wild Birds

Environmental conditions under which species reproduce have major consequences on breeding success and subsequent fitness. Therefore breeding habitat choice is ultimately important. Studies rarely address the potential fitness pay-offs of alternative natural breeding habitats by experimental translocation. Here we present a new tool to study fitness consequences of free living birds in different habitats. We translocated a migratory passerine, the pied flycatcher (Ficedula hypoleuca), to a novel site, where pairs were subjected to a short stay (2–4 days) in a nest box-equipped aviary before being released. We show that it is technically possible to retain birds in the new area for breeding, allowing the study of reproductive consequences of dispersal under natural conditions. The translocation resulted in an extension of the interval between arrival and egg laying of four days, highlighting the importance of having an adequate control group. Clutch size and nestling parameters did not differ significantly between translocated and unmanipulated females, which suggests that the procedure did not affect birds in their reproductive performance later on. This method could be applied broadly in evolutionary and ecological research, e.g., to study the potential fitness benefits and costs for dispersing to more northern latitudes as a way of adapting to climate change

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

UMR-AGAP Equipe DAVV (Diversité, adaptation et amélioration de la vigne) ; équipe ID (Intégration de Données)International audienceAbstractBackgroundAs for many crops, new high-quality grapevine varieties requiring less pesticide and adapted to climate change are needed. In perennial species, breeding is a long process which can be speeded up by gaining knowledge about quantitative trait loci linked to agronomic traits variation. However, due to the long juvenile period of these species, establishing numerous highly recombinant populations for high resolution mapping is both costly and time-consuming. Genome wide association studies in germplasm panels is an alternative method of choice, since it allows identifying the main quantitative trait loci with high resolution by exploiting past recombination events between cultivars. Such studies require adequate panel design to represent most of the available genetic and phenotypic diversity. Assessing linkage disequilibrium extent and panel power is also needed to determine the marker density required for association studies.ResultsStarting from the largest grapevine collection worldwide maintained in Vassal (France), we designed a diversity panel of 279 cultivars with limited relatedness, reflecting the low structuration in three genetic pools resulting from different uses (table vs wine) and geographical origin (East vs West), and including the major founders of modern cultivars. With 20 simple sequence repeat markers and five quantitative traits, we showed that our panel adequately captured most of the genetic and phenotypic diversity existing within the entire Vassal collection. To assess linkage disequilibrium extent and panel power, we genotyped single nucleotide polymorphisms: 372 over four genomic regions and 129 distributed over the whole genome. Linkage disequilibrium, measured by correlation corrected for kinship, reached 0.2 for a physical distance between 9 and 458 Kb depending on genetic pool and genomic region, with varying size of linkage disequilibrium blocks. This panel achieved reasonable power to detect associations between traits with high broad-sense heritability (> 0.7) and causal loci with intermediate allelic frequency and strong effect (explaining > 10 % of total variance).ConclusionsOur association panel constitutes a new, highly valuable resource for genetic association studies in grapevine, and deserves dissemination to diverse field and greenhouse trials to gain more insight into the genetic control of many agronomic traits and their interaction with the environment