FORUM: Without fear or favour: An open letter to my colleagues in journalism education:

"Polytechnics have tightend up their own regimes, making their own demands of journalism teachers in terms of internal reporting procedures, restrcturings, etc. Universities have now entered the fray bigtime, i.e. the Wellington Polytechnic takeover, Auckland Institute of Technology's redesignation as Auckland University of Technology. The Tertiary Education Commission (TEC) has sent a nasty shock through everyone's lives, lacing greater emphasis on increasing reasearch outputs. Rather than lessening with the years, the persssure on journalism educators has, if anything, become greater. I sometimes wonder why we do it...

Identification of citrullinated α-enolase as a candidate autoantigen in rheumatoid arthritis

Antibodies against citrullinated proteins are highly specific for rheumatoid arthritis (RA), but little is understood about their citrullinated target antigens. We have detected a candidate citrullinated protein by immunoblotting lysates of monocytic and granulocytic HL-60 cells treated with peptidylarginine deiminase. In an initial screen of serum samples from four patients with RA and one control, a protein of molecular mass 47 kDa from monocytic HL-60s reacted with sera from the patients, but not with the serum from the control. Only the citrullinated form of the protein was recognised. The antigen was identified by tandem mass spectrometry as α-enolase, and the positions of nine citrulline residues in the sequence were determined. Serum samples from 52 patients with RA and 40 healthy controls were tested for presence of antibodies against citrullinated and non-citrullinated α-enolase by immunoblotting of the purified antigens. Twenty-four sera from patients with RA (46%) reacted with citrullinated α-enolase, of which seven (13%) also recognised the non-citrullinated protein. Six samples from the controls (15%) reacted with both forms. α-Enolase was detected in the RA joint, where it co-localised with citrullinated proteins. The presence of antibody together with expression of antigen within the joint implicates citrullinated α-enolase as a candidate autoantigen that could drive the chronic inflammatory response in RA

Shift from Carbon Flow through the Microbial Loop to the Viral Shunt in Coastal Antarctic Waters during Austral Summer

The relative flow of carbon through the viral shunt and the microbial loop is a pivotal factor controlling the contribution of secondary production to the food web and to rates of nutrient remineralization and respiration. The current study examines the significance of these processes in the coastal waters of the Antarctic during the productive austral summer months. Throughout the study a general trend towards lower bacterioplankton and heterotrophic nanoflagellate (HNF) abundances was observed, whereas virioplankton concentration increased. A corresponding decline of HNF grazing rates and shift towards viral production, indicative of viral infection, was measured. Carbon flow mediated by HNF grazing decreased by more than half from 5.7 µg C L−1 day−1 on average in December and January to 2.4 µg C L−1 day−1 in February. Conversely, carbon flow through the viral shunt increased substantially over the study from on average 0.9 µg C L−1 day−1 in December to 7.6 µg C L−1 day−1 in February. This study shows that functioning of the coastal Antarctic microbial community varied considerably over the productive summer months. In early summer, the system favors transfer of matter and energy to higher trophic levels via the microbial loop, however towards the end of summer carbon flow is redirected towards the viral shunt, causing a switch towards more recycling and therefore increased respiration and regeneration

Plasticity in dormancy behaviour of Calanoides acutus in Antarctic coastal waters

Copepods that enter dormancy, such as Calanoides acutus, are key primary consumers in Southern Ocean food webs where they convert a portion of the seasonal phytoplankton biomass into a longer-term energetic and physiological resource as wax ester (WE) reserves. We studied the seasonal abundance and lipid profiles of pre-adult and adult C. acutus in relation to phytoplankton dynamics on the Western Antarctic Peninsula. Initiation of dormancy occurred when WE unsaturation was relatively high, and chlorophyll a (Chl a) concentrations, predominantly attributable to diatoms, were reducing. Declines in WE unsaturation during the winter may act as a dormancy timing mechanism with increased Chl a concentrations likely to promote sedimentation that results in a teleconnection between the surface and deep water inducing ascent. A late summer diatom bloom was linked to early dormancy termination of females and a second spawning event. The frequency and duration of high biomass phytoplankton blooms may have consequences for the lifespan of the iteroparous C. acutus females (either 1 or 2 years) if limited by a total of two main spawning events. Late summer recruits, generated by a second spawning event, likely benefitted from lower predation and high phytoplankton food availability. The flexibility of copepods to modulate their life-cycle strategy in response to bottom-up and top-down conditions enables individuals to optimize their probability of reproductive success in the very variable environment prevalent in the Southern Ocean

Fitting Ranked English and Spanish Letter Frequency Distribution in U.S. and Mexican Presidential Speeches

The limited range in its abscissa of ranked letter frequency distributions causes multiple functions to fit the observed distribution reasonably well. In order to critically compare various functions, we apply the statistical model selections on ten functions, using the texts of U.S. and Mexican presidential speeches in the last 1-2 centuries. Dispite minor switching of ranking order of certain letters during the temporal evolution for both datasets, the letter usage is generally stable. The best fitting function, judged by either least-square-error or by AIC/BIC model selection, is the Cocho/Beta function. We also use a novel method to discover clusters of letters by their observed-over-expected frequency ratios.Comment: 7 figure

Descriptive epidemiology of energy expenditure in the UK: findings from the National Diet and Nutrition Survey 2008-15.

BACKGROUND: Little is known about population levels of energy expenditure, as national surveillance systems typically employ only crude measures. The National Diet and Nutrition Survey (NDNS) in the UK measured energy expenditure in a 10% subsample by gold-standard doubly labelled water (DLW). METHODS: DLW-subsample participants from the NDNS (383 males, 387 females) aged 4-91 years were recruited between 2008 and 2015 (rolling programme). Height and weight were measured and body-fat percentage estimated by deuterium dilution. RESULTS: Absolute total energy expenditure (TEE) increased steadily throughout childhood, ranging from 6.2 and 7.2 MJ/day in 4- to 7-year-olds to 9.7 and 11.7 MJ/day for 14- to 16-year-old girls and boys, respectively. TEE peaked in 17- to 27-year-old women (10.7 MJ/day) and 28- to 43-year-old men (14.4 MJ/day), before decreasing gradually in old age. Physical-activity energy expenditure (PAEE) declined steadily with age from childhood (87 kJ/day/kg in 4- to 7-year-olds) through to old age (38 kJ/day/kg in 71- to 91-year-olds). No differences were observed by time, region and macronutrient composition. Body-fat percentage was strongly inversely associated with PAEE throughout life, irrespective of expressing PAEE relative to body mass or fat-free mass. Compared with females with 40% recorded 29 kJ/day/kg body mass and 18 kJ/day/kg fat-free mass less PAEE in analyses adjusted for age, geographical region and time of assessment. Similarly, compared with males with 35% recorded 26 kJ/day/kg body mass and 10 kJ/day/kg fat-free mass less PAEE. CONCLUSIONS: This first nationally representative study reports levels of human-energy expenditure as measured by gold-standard methodology; values may serve as a reference for other population studies. Age, sex and body composition are the main determinants of energy expenditure. Key Messages This is the first nationally representative study of human energy expenditure, covering the UK in the period 2008-2015. Total energy expenditure (MJ/day) increases steadily with age throughout childhood and adolescence, peaks in the 3rd decade of life in women and 4th decade of life in men, before decreasing gradually in old age. Physical activity energy expenditure (kJ/day/kg or kJ/day/kg fat-free mass) declines steadily with age from childhood to old age, more steeply so in males. Body-fat percentage is strongly inversely associated with physical activity energy expenditure. We found little evidence that energy expenditure varied by geographical region, over time, or by dietary macronutrient composition.The authors were supported by the UK Medical Research Council (unit programme numbers. MC_UU_12015/1, MC_UU_12015/3, U105960371) and the NIHR Biomedical Research Centre in Cambridge (IS-BRC-1215-20014). TL was funded by the Cambridge Trust

Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons

Alternative splicing—the production of multiple messenger RNA isoforms from a single gene—is regulated in part by RNA binding proteins. While the RBPs transformer2 alpha (Tra2α) and Tra2β have both been implicated in the regulation of alternative splicing, their relative contributions to this process are not well understood. Here we find simultaneous—but not individual—depletion of Tra2α and Tra2β induces substantial shifts in splicing of endogenous Tra2β target exons, and that both constitutive and alternative target exons are under dual Tra2α–Tra2β control. Target exons are enriched in genes associated with chromosome biology including CHEK1, which encodes a key DNA damage response protein. Dual Tra2 protein depletion reduces expression of full-length CHK1 protein, results in the accumulation of the DNA damage marker γH2AX and decreased cell viability. We conclude Tra2 proteins jointly control constitutive and alternative splicing patterns via paralog compensation to control pathways essential to the maintenance of cell viability

Heteroepitaxy of lattice-matched compound semiconductors on silicon

The heteroepitaxial overgrowth of silicon by nearly lattice-matched compound semiconductors is reviewed in the context of the separation of the chemical problems associated with the initial sealing of the silicon surface by a contiguous epitaxial compound film from the problems associated with the generation of strain during heteroepitaxial growth. Of the mixed compound systems available dilute solid solutions of composition Al x Ga 1Ϫx N y P 1Ϫy and ZnS y Se 1Ϫy as well as ZnSi x Ge 1Ϫx P are suitable candidates for the exactly lattice-matched epitaxial overgrowth of silicon. Real-time process monitoring by nonintrusive methods is important for gaining an understanding of the epitaxial overgrowth mechanism and for controlling the film properties. A new method, p-polarized reflectance spectroscopy is introduced that provides detailed information about the growth rate per cycle, the bulk optical properties of the film and its topography. Submonolayer resolution is accomplished for thousands of Å of film growth by pulsed chemical beam epitaxy. While the cubic materials considered here generally afford easier control of the electrical and optical properties, the noncubic materials have advantages in the sealing of the silicon surface because of their anisotropic growth and the formation of metastable solid solutions that may permit the graded growth of compound films under exactly lattice-matched conditions. Therefore, no clear-cut preference in the materials selection for nearly lattice-matched overgrowth of silicon by compound semiconductors can be identified at this time

Thermodynamic Geometry: Evolution, Correlation and Phase Transition

Under the fluctuation of the electric charge and atomic mass, this paper considers the theory of the thin film depletion layer formation of an ensemble of finitely excited, non-empty $d/f$-orbital heavy materials, from the thermodynamic geometric perspective. At each state of the local adiabatic evolutions, we examine the nature of the thermodynamic parameters, \textit{viz.}, electric charge and mass, changing at each respective embeddings. The definition of the intrinsic Riemannian geometry and differential topology offers the properties of (i) local heat capacities, (ii) global stability criterion and (iv) global correlation length. Under the Gaussian fluctuations, such an intrinsic geometric consideration is anticipated to be useful in the statistical coating of the thin film layer of a desired quality-fine high cost material on a low cost durable coatant. From the perspective of the daily-life applications, the thermodynamic geometry is thus intrinsically self-consistent with the theory of the local and global economic optimizations. Following the above procedure, the quality of the thin layer depletion could self-consistently be examined to produce an economic, quality products at a desired economic value.Comment: 22 pages, 5 figures, Keywords: Thermodynamic Geometry, Metal Depletion, Nano-science, Thin Film Technology, Quality Economic Characterization; added 1 figure and 1 section (n.10), and edited bibliograph

Endocrine remodelling of the adult intestine sustains reproduction in Drosophila.

The production of offspring is energetically costly and relies on incompletely understood mechanisms that generate a positive energy balance. In mothers of many species, changes in key energy-associated internal organs are common yet poorly characterised functionally and mechanistically. In this study, we show that, in adult Drosophila females, the midgut is dramatically remodelled to enhance reproductive output. In contrast to extant models, organ remodelling does not occur in response to increased nutrient intake and/or offspring demands, but rather precedes them. With spatially and temporally directed manipulations, we identify juvenile hormone (JH) as an anticipatory endocrine signal released after mating. Acting through intestinal bHLH-PAS domain proteins Methoprene-tolerant (Met) and Germ cell-expressed (Gce), JH signals directly to intestinal progenitors to yield a larger organ, and adjusts gene expression and sterol regulatory element-binding protein (SREBP) activity in enterocytes to support increased lipid metabolism. Our findings identify a metabolically significant paradigm of adult somatic organ remodelling linking hormonal signals, epithelial plasticity, and reproductive output. DOI: http://dx.doi.org/10.7554/eLife.06930.00