Characterization of a wheat HSP70 gene and its expression in response to stripe rust infection and abiotic stresses

Members of the family of 70-kD heat shock proteins (HSP70 s) play various stress-protective roles in plants. In this study, a wheat HSP70 gene was isolated from a suppression subtractive hybridization (SSH) cDNA library of wheat leaves infected by Puccinia striiformis f. sp. tritici. The gene, that was designated as TaHSC70, was predicted to encode a protein of 690 amino acids, with a molecular mass of 73.54 KDa and a pI of 5.01. Further analysis revealed the presence of a conserved signature that is characteristic for HSP70s and phylogenetic analysis demonstrated that TaHSC70 is a homolog of chloroplast HSP70s. TaHSC70 mRNA was present in leaves of both green and etiolated wheat seedlings and in stems and roots. The transcript level in roots was approximately threefold less than in leaves but light–dark treatment did not charge TaHSC70 expression. Following heat shock of wheat seedlings at 40°C, TaHSC70 expression increased in leaves of etiolated seedlings but remained stable at the same level in green seedlings. In addition, TaHSC70 was differentially expressed during an incompatible and compatible interaction with wheat-stripe rust, and there was a transient increase in expression upon treatment with methyl jasmonate (MeJA) treatment. Salicylic acid (SA), ethylene (ET) and abscisic acid (ABA) treatments had no influence on TaHSC70 expression. These results suggest that TaHSC70 plays a role in stress-related responses, and in defense responses elicited by infection with stripe rust fungus and does so via a JA-dependent signal transduction pathway

X-Ray-Diffraction Study of Charge-Density-Waves and Oxygen-Ordering in YBa2Cu3O6+x Superconductor

We report a temperature-dependent increase below 300 K of diffuse superlattice peaks corresponding to q_0 =(~2/5,0,0) in an under-doped YBa_2Cu_3O_6+x superconductor (x~0.63). These peaks reveal strong c-axis correlations involving the CuO_2 bilayers, show a non-uniform increase below \~220 K with a plateau for ~100-160 K, and appear to saturate in the superconducting phase. We interpret this unconventional T-dependence of the ``oxygen-ordering'' peaks as a manifestation of a charge density wave in the CuO_2 planes coupled to the oxygen-vacancy ordering.Comment: 4 pages, 4 figure

Measuring the cosmological bulk flow using the peculiar velocities of supernovae

We study large-scale coherent motion in our universe using the existing Type IA supernovae data. If the recently observed bulk flow is real, then some imprint must be left on supernovae motion. We run a series of Monte Carlo Markov Chain runs in various redshift bins and find a sharp contrast between the z 0.05 data. The$z < 0.05 data are consistent with the bulk flow in the direction (l,b)=({290^{+39}_{-31}}^{\circ}, {20^{+32}_{-32}}^{\circ}) with a magnitude of v_bulk = 188^{+119}_{-103} km/s at 68% confidence. The significance of detection (compared to the null hypothesis) is 95%. In contrast, z > 0.05 data (which contains 425 of the 557 supernovae in the Union2 data set) show no evidence for bulk flow. While the direction of the bulk flow agrees very well with previous studies, the magnitude is significantly smaller. For example, the Kashlinsky, et al.'s original bulk flow result of v_bulk > 600 km/s is inconsistent with our analysis at greater than 99.7% confidence level. Furthermore, our best-fit bulk flow velocity is consistent with the expectation for the \Lambda CDM model, which lies inside the 68% confidence limit.Comment: Version published in JCA

Activity recognition using a supervised non-parametric hierarchical HMM

The problem of classifying human activities occurring in depth image sequences is addressed. The 3D joint positions of a human skeleton and the local depth image pattern around these joint positions define the features. A two level hierarchical Hidden Markov Model (H-HMM), with independent Markov chains for the joint positions and depth image pattern, is used to model the features. The states corresponding to the H-HMM bottom level characterize the granular poses while the top level characterizes the coarser actions associated with the activities. Further, the H-HMM is based on a Hierarchical Dirichlet Process (HDP), and is fully non-parametric with the number of pose and action states inferred automatically from data. This is a significant advantage over classical HMM and its extensions. In order to perform classification, the relationships between the actions and the activity labels are captured using multinomial logistic regression. The proposed inference procedure ensures alignment of actions from activities with similar labels. Our construction enables information sharing, allows incorporation of unlabelled examples and provides a flexible factorized representation to include multiple data channels. Experiments with multiple real world datasets show the efficacy of our classification approach

Superfield T-duality rules

A geometric treatment of T-duality as an operation which acts on differential forms in superspace allows us to derive the complete set of T-duality transformation rules which relate the superfield potentials of D=10 type IIA supergravity with those of type IIB supergravity including Ramond-Ramond superfield potentials and fermionic supervielbeins. We show that these rules are consistent with the superspace supergravity constraints.Comment: 24 pages, latex, no figures. V2 misprints corrected. V3. One reference ([30]) and a comment on it ('Notice added') on p. 19 adde

High-Temperature Hall Effect in Ga(1-x)Mn(x)As

The temperature dependence of the Hall coefficient of a series of ferromagnetic Ga(1-x)Mn(x)As samples is measured in the temperature range 80K < T < 500K. We model the Hall coefficient assuming a magnetic susceptibility given by the Curie-Weiss law, a spontaneous Hall coefficient proportional to rho_xx^2(T), and including a constant diamagnetic contribution in the susceptibility. For all low resistivity samples this model provides excellent fits to the measured data up to T=380K and allows extraction of the hole concentration (p). The calculated p are compared to alternative methods of determining hole densities in these materials: pulsed high magnetic field (up to 55 Tesla) technique at low temperatures (less than the Curie temperature), and electrochemical capacitance- voltage profiling. We find that the Anomalous Hall Effect (AHE) contribution to rho_xy is substantial even well above the Curie temperature. Measurements of the Hall effect in this temperature regime can be used as a testing ground for theoretical descriptions of transport in these materials. We find that our data are consistent with recently published theories of the AHE, but they are inconsistent with theoretical models previously used to describe the AHE in conventional magnetic materials.Comment: 6 pages, 5 figures, 1 table. Accepted to Phys.Rev.

The geochemistry of environmentally important trace elements in UK coals, with special reference to the Parkgate coal in the Yorkshire-Nottinghamshire Coalfield, UK

The Parkgate coal of Langsettian age in the Yorkshire-Nottinghamshire coalfield is typical of many coals in the UK in that it has a high sulphur (S) content. Detailed information on the distribution of the forms of S, both laterally and vertically through the seam, was known from previous investigations. In the present work, 38 interval samples from five measured sections of the coal were comprehensively analysed for major, minor and trace elements and the significance of the relationships established using both raw and centered log transformed data. The major elements are used to quantify the variations in the inorganic and organic coal components and determine the trace element associations. Pyrite contains nearly all of the Hg, As, Se, Tl and Pb and is also the major source of the Mo, Ni, Cd and Sb. The clays contain the following elements in decreasing order of association: Rb, Cs, Li, Ga, U, Cr, V, Sc, Y, Bi, Cu, Nb, Sn, Te and Th. Nearly all of the Rb is present in the clay fraction, whereas for elements such as V, Cu and U, a significant amount is thought to be present in the organic matter, based on the K vs trace element regression equations. Only Ge, and possibly Be, would appear to have a dominant organic source. The trace element concentrations are calculated for pyrite, the clay fraction and organic matter. For pyrite it is noted that concentrations agree with published data from the Yorkshire-Nottinghamshire coalfield and also that Tl concentrations (median of 0.33 ppm) in the pyrite are greater than either Hg or Cd. Unlike these elements, Tl has attracted less attention and possibly more information is needed on its anthropogenic distribution and impacts on man and the environment. A seawater source is thought to be responsible for the high concentrations of S, Cl and the non-detrital trace elements in the Parkgate coal. Indicative of the seawater control is the Th/U ratio, which expresses the detrital to non-detrital element contributions. Using other elements, similar ratios can be calculated, which in combination offer greater interpretative value. (C) 2009 Elsevier B.V. All rights reserved

The CcmC-CcmE interaction during cytochrome c maturation by System I is driven by protein-protein and not protein-heme contacts.

Cytochromes c are ubiquitous proteins, essential for life in most organisms. Their distinctive characteristic is the covalent attachment of heme to their polypeptide chain. This post-translational modification is performed by a dedicated protein system, which in many Gram-negative bacteria and plant mitochondria is a nine-protein apparatus (CcmA-I) called System I. Despite decades of study, mechanistic understanding of the protein-protein interactions in this highly complex maturation machinery is still lacking. Here, we focused on the interaction of CcmC, the protein that sources the heme cofactor, with CcmE, the pivotal component of System I responsible for the transfer of the heme to the apocytochrome. Using in silico analyses, we identified a putative interaction site between these two proteins (residues Asp &lt;sup&gt;47&lt;/sup&gt; , Gln &lt;sup&gt;50&lt;/sup&gt; , and Arg &lt;sup&gt;55&lt;/sup&gt; on CcmC; Arg &lt;sup&gt;73&lt;/sup&gt; , Asp &lt;sup&gt;101&lt;/sup&gt; , and Glu &lt;sup&gt;105&lt;/sup&gt; on CcmE), and we validated our findings by in vivo experiments in Escherichia coli Moreover, employing NMR spectroscopy, we examined whether a heme-binding site on CcmE contributes to this interaction and found that CcmC and CcmE associate via protein-protein rather than protein-heme contacts. The combination of in vivo site-directed mutagenesis studies and high-resolution structural techniques enabled us to determine at the residue level the mechanism for the formation of one of the key protein complexes for cytochrome c maturation by System I

Anomalous Hopping Exponents of Ultrathin Films of Metals

The temperature dependence of the resistance R(T) of ultrathin quench-condensed films of Ag, Bi, Pb and Pd has been investigated. In the most resistive films, R(T)=Roexp(To/T)^x, where x=0.75. Surprisingly, the exponent x was found to be constant for a wide range of Ro and To in all four materials, possibly implying a consistent underlying conduction mechanism. The results are discussed in terms of several different models of hopping conduction.Comment: 6 pages, 5 figure

Hyperon semileptonic decays and quark spin content of the proton

We investigate the hyperon semileptonic decays and the quark spin content of the proton $\Delta \Sigma$ taking into account flavor SU(3) symmetry breaking. Symmetry breaking is implemented with the help of the chiral quark-soliton model in an approach, in which the dynamical parameters are fixed by the experimental data for six hyperon semileptonic decay constants. As a result we predict the unmeasured decay constants, particularly for $\Xi^0 \to \Sigma^+$, which will be soon measured and examine the effect of the SU(3) symmetry breaking on the spin content $\Delta \Sigma$ of the proton. Unfortunately large experimental errors of $\Xi^-$ decays propagate in our analysis making $\Delta \Sigma$ and $\Delta s$ practically undetermined. We conclude that statements concerning the values of these two quantities, which are based on the exact SU(3) symmetry, are premature. We stress that the meaningful results can be obtained only if the experimental errors for the $\Xi$ decays are reduced.Comment: The final version accepted for publication in Phys. Rev. D. 18 pages, RevTex is used with 4 figures include