Roost availability may constrain shorebird distribution:Exploring the energetic costs of roosting and disturbance around a tropical bay

High tides force shorebirds from their intertidal feeding areas to refuges known as roosts. This paper explores the energetic costs of roost disturbance of great knot (Calidris tenuirostris) and red knot (C. canutus) at Roebuck Bay, North-western Australia, assessing disturbance levels at different roost sites through direct observation and automatic radio-telemetry, and applying physiological equations and predictive roost choice models to estimate energetic costs of disturbance through a complete tidal cycle. The study area had a variety of roosts, but use of each was constrained by conditions of tide and time. The roost most suitable for shorebirds on daytime high tides of intermediate height experienced high levels of disturbance from both natural sources (birds of prey) and humans. Flight costs caused by disturbance at this site exceeded the costs of flying to and roosting at the nearest alternative roost, 25 km away. However, shorebirds did not roost at the alternate site, possibly because of the risk of heat stress in a prolonged flight in tropical conditions. Increases in disturbance levels at just one of the roost sites of Roebuck Bay would increase energetic costs substantially, and could easily reach the point at which feeding areas accessed from this roost cannot be used without incurring a net energy deficit. Roost availability can therefore limit access to feeding areas and hence limit population size. Adequate provision and management of roost sites is accordingly an important consideration in conservation of sites used by coastal shorebirds. (c) 2006 Elsevier Ltd. All rights reserved

Do body condition and plumage during fuelling predict northwards departure dates of Great Knots Calidris tenuirostris from north-west Australia?

It is often assumed that strong selection pressures give rise to trade-offs between body condition and time in long-distance migrating birds. Birds that are 'behind schedule' in fuel deposition or moult should delay departure, and this should result in a negative correlation between initial condition and departure date. We tested this hypothesis in the Great Knot Calidris tenuirostris migrating from north-west Australia to eastern Asia en route to Siberia. Great Knot gain mass and moult into breeding plumage before leaving northern Australia in late March and early April, and fly 5400-6000 km to eastern China and Korea. We radiotracked 27 individuals (17 males and ten females) to determine departure dates; 23 migrated and four remained in Australia. We characterized body condition at capture using body mass, predicted pectoral muscle mass (based on ultrasound estimates of the size of the pectoral muscles) and breeding plumage scores. Residual condition indices were uncorrelated, indicating that at the individual level, variation in one fuelling component was not strongly associated with variation in the other components. Birds that did not depart had lower residual body mass and breeding plumage indices than those that did migrate; these four birds may have been subadults. Neither sex, size nor the condition indices explained variation in departure date of migrants. Reasons for this are explored. Departure dates for northward migrating waders indicate that the migration window (span over which birds depart) decreases with proximity to the northern breeding grounds. We suggest that migration schedules become tighter as birds get nearer to the breeding grounds. Thus the lack of a relationship between condition and departure date in Great Knots may reflect the fact that the departure episode under study is the first one in sequence and is still 4-8 weeks before breeding

Rapid population decline in migratory shorebirds relying on Yellow Sea tidal mudflats as stopover sites

Migratory animals are threatened by human-induced global change. However, little is known about how stopover habitat, essential for refuelling during migration, affects the population dynamics of migratory species. Using 20 years of continent-wide citizen science data, we assess population trends of ten shorebird taxa that refuel on Yellow Sea tidal mudflats, a threatened ecosystem that has shrunk by >65% in recent decades. Seven of the taxa declined at rates of up to 8% per year. Taxa with the greatest reliance on the Yellow Sea as a stopover site showed the greatest declines, whereas those that stop primarily in other regions had slowly declining or stable populations. Decline rate was unaffected by shared evolutionary history among taxa and was not predicted by migration distance, breeding range size, non-breeding location, generation time or body size. These results suggest that changes in stopover habitat can severely limit migratory populations

A global threats overview for Numeniini populations: synthesising expert knowledge for a group of declining migratory birds

The Numeniini is a tribe of thirteen wader species (Scolopacidae, Charadriiformes) of which seven are near-threatened or globally threatened, including two critically endangered. To help inform conservation management and policy responses, we present the results of an expert assessment of the threats that members of this taxonomic group face across migratory flyways. Most threats are increasing in intensity, particularly in non-breeding areas, where habitat loss resulting from residential and commercial development, aquaculture, mining, transport, disturbance, problematic invasive species, pollution and climate change were regarded as having the greatest detrimental impact. Fewer threats (mining, disturbance, problematic native species and climate change) were identified as widely affecting breeding areas. Numeniini populations face the greatest number of non-breeding threats in the East Asian-Australasian Flyway, especially those associated with coastal reclamation; related threats were also identified across the Central and Atlantic Americas, and East Atlantic flyways. Threats on the breeding grounds were greatest in Central and Atlantic Americas, East Atlantic and West Asian flyways. Three priority actions were associated with monitoring and research: to monitor breeding population trends (which for species breeding in remote areas may best be achieved through surveys at key non-breeding sites), to deploy tracking technologies to identify migratory connectivity, and to monitor land-cover change across breeding and non-breeding areas. Two priority actions were focused on conservation and policy responses: to identify and effectively protect key non-breeding sites across all flyways (particularly in the East Asian - Australasian Flyway), and to implement successful conservation interventions at a sufficient scale across human-dominated landscapes for species’ recovery to be achieved. If implemented urgently, these measures in combination have the potential to alter the current population declines of many Numeniini species and provide a template for the conservation of other groups of threatened species

Parasites of non-native freshwater fishes introduced into england and wales suggest enemy release and parasite acquisition

When non-native species are introduced into a new range, their parasites can also be introduced, with these potentially spilling-over into native hosts. However, in general, evidence suggests that a high proportion of their native parasites are lost during introduction and infections by some new parasites from the native range might occur, potentially resulting in parasite spill-back to native species. These processes were investigated here using parasite surveys and literature review on seven non-native freshwater fishes introduced into England and Wales. Comparison of the mean numbers of parasite species and genera per population for each fish species England andWaleswith their native ranges revealed\9 % of the native parasite fauna were present in their populations in England and Wales. There was no evidence suggesting these introduced parasites had spilled over into sympatric native fishes. The non-native fishes did acquire parasites following their introduction, providing potential for parasite spill-back to sympatric fishes, and resulted in non-significant differences in overall mean numbers of parasites per populations between the two ranges. Through this acquisition, the non-native fishes also had mean numbers of parasite species and genera per population that were not significantly different to sympatric native fishes. Thus, the non-native fishes in England and Wales showed evidence of enemy release, acquired new parasites following introduction providing potential for spill-back, but showed no evidence of parasite spill-over

Genetic mechanisms of critical illness in COVID-19.

Host-mediated lung inflammation is present1, and drives mortality2, in the critical illness caused by coronavirus disease 2019 (COVID-19). Host genetic variants associated with critical illness may identify mechanistic targets for therapeutic development3. Here we report the results of the GenOMICC (Genetics Of Mortality In Critical Care) genome-wide association study in 2,244 critically ill patients with COVID-19 from 208 UK intensive care units. We have identified and replicated the following new genome-wide significant associations: on chromosome 12q24.13 (rs10735079, P = 1.65 × 10-8) in a gene cluster that encodes antiviral restriction enzyme activators (OAS1, OAS2 and OAS3); on chromosome 19p13.2 (rs74956615, P = 2.3 × 10-8) near the gene that encodes tyrosine kinase 2 (TYK2); on chromosome 19p13.3 (rs2109069, P = 3.98 ×  10-12) within the gene that encodes dipeptidyl peptidase 9 (DPP9); and on chromosome 21q22.1 (rs2236757, P = 4.99 × 10-8) in the interferon receptor gene IFNAR2. We identified potential targets for repurposing of licensed medications: using Mendelian randomization, we found evidence that low expression of IFNAR2, or high expression of TYK2, are associated with life-threatening disease; and transcriptome-wide association in lung tissue revealed that high expression of the monocyte-macrophage chemotactic receptor CCR2 is associated with severe COVID-19. Our results identify robust genetic signals relating to key host antiviral defence mechanisms and mediators of inflammatory organ damage in COVID-19. Both mechanisms may be amenable to targeted treatment with existing drugs. However, large-scale randomized clinical trials will be essential before any change to clinical practice