Parasitic copepods from Egyptian Red Sea fishes: Bomolochidae Claus, 1875

© The Author(s) 2015 Open Access - This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The attached file is the published version of the article

Soil microbial populations in deep floodplain soils are adapted to infrequent but regular carbon substrate addition

This is the final version of the article. Available from Elsevier via the DOI in this record.Floodplain soils provide an important link in the land-ocean aquatic continuum. Understanding microbial activity in these soils, which can be many metres deep, is a key component in our understanding of the role of floodplains in the carbon (C) cycle. We sampled the mineral soil profile to 3 m depth from two floodplain sites under long-term pasture adjacent to the river Culm in SW England, UK. Soil chemistry (C, nitrogen (N), phosphorus (P), soil microbial biomass (SMB), moisture content) and soil solution (pH, dissolved organic C (DOC) and N, nitrate, ammonium, water extractable P) were analysed over the 3 m depth in 6 increments: 0.0–0.2, 0.2–0.7, 1.0–1.5, 1.5–2.0, 2.0–2.5, and 2.5–3.0 m. 14 C-glucose was added to the soil and the evolution of 14 CO 2 measured during a 29 d incubation. From soil properties and 14 C-glucose mineralisation, three depth groups emerged, with distinct turnover times extrapolated from initial k 1 mineralisation rate constants of 2 h (topsoil 0.0–0.2 m), 4 h (subsoil 0.2–0.7 m), and 11 h (deep subsoil 1.0–3.0 m). However, when normalised by SMB, k 1 rate constants had no significant differences across all depths. Deep subsoil had a 2 h lag to reach maximal 14 CO 2 production whereas the topsoil and subsoil (0.2–0.7 m) achieved maximum mineralisation rates immediately. SMB decreased with depth, but only to half of the surface population, with the proportion of SMB-C to total C increasing from 1% in topsoil to 15% in deep subsoil ( > 1.0 m). The relatively large SMB concentration and rapid mineralisation of 14 C-glucose suggests that DOC turnover in deep soil horizons in floodplains is limited by access to biologically available C and not the size of the microbial population.Natural Environment Research Council (NERC)Biotechnology and Biological Sciences Research Council (BBSRC

How can we realize sustainable development goals in rocky desertified regions by enhancing crop yield with reduction of environmental risks?

This is the final version. Available from MDPI via the DOI in this record. Data Availability Statement: The data utilized in the study is available from the authors, on reasonable request.To meet the sustainable development goals in rocky desertified regions like Guizhou Province in China, we should maximize the crop yield with minimal environmental costs. In this study, we first calculated the yield gap for 6 main crop species in Guizhou Province and evaluated the quantitative relationships between crop yield and influencing variables utilizing ensembled artificial neural networks. We also tested the influence of adjusting the quantity of local fertilization and irrigation on crop production in Guizhou Province. Results showed that the total yield of the selected crops had, on average, reached over 72.5% of the theoretical maximum yield. Increasing irrigation tended to be more consistently effective at increasing crop yield than additional fertilization. Conversely, appropriate reduction of fertilization may even benefit crop yield in some regions, simultaneously resulting in significantly higher fertilization efficiency with lower residuals in the environment. The total positive impact of continuous intensification of irrigation and fertilization on most crop species was limited. Therefore, local stakeholders are advised to consider other agricultural management measures to improve crop yield in this region.National Natural Science Foundation of ChinaNatural Environment Research Counci

Periodic relations between terrestrial vegetation and climate factors across the globe

This is the final version. Available on open access from MDPI via the DOI in this record. The GLASS LAI data from 1981 to 2014 were acquired from the Chinese National Earth System Science Data Sharing Infrastructure website (http://www.geodata.cn/thematicView/GLASS.html)In this paper, cross-spectrum analysis was used to verify the agreement of periodicity between the global LAI (leaf area index) and climate factors. The results demonstrated that the LAI of deciduous forests and permanent wetlands have high agreement with temperature, rainfall and radiation over annual cycles. A low agreement between the LAI and seasonal climate variables was observed for some of the temperate and tropical vegetation types including shrublands and evergreen broadleaf forests, possibly due to the diversity of vegetation and human activities. Across all vegetation types, the LAI demonstrated a large time lag following variation in radiation (>1 month), whereas relatively short lag periods were observed between the LAI and annual temperature (around 2 weeks)/rainfall patterns (less than 10 days), suggesting that the impact of radiation on global vegetation growth is relatively slow, which is in accord with the results of previous studies. This work can provide a benchmark of the phenological drivers in global vegetation, from the perspective of periodicity, as well as helping to parameterize and refine the DGVMs (Dynamic Global Vegetation Models) for different vegetation types.National Natural Science Foundation of ChinaChina Scholarship Counci

Geomorphically mediated carbon dynamics of floodplain soils and implications for net effect of carbon erosion

This is the final version. Available from Wiley via the DOI in this record. DATA AVAILABILITY: The data that support the findings of this study are openly available in “figshare” at http://doi.org/10.6084/m9.figshare.17263883.v1The fate of organic carbon deposited in floodplain sediments is an important control on the magnitude and direction of the carbon flux from anthropogenically accelerated erosion and channelization of the riverine network. Globally, carbon deposition rates and mean residence time (MRT) within different geomorphic settings remains poorly constrained. We sampled soil profiles to 0.8 m depth from two geomorphic zones: active channel belt (ACB) and lowland floodplain, under long-term pasture adjacent to the river Culm in SW England, UK. We evaluated sedimentation rates and carbon storage using fallout radionuclide 137Cs, particle size and total carbon analyses. Variation in decomposition was assessed via empirical (soil aggregate size, density fractionation combined with natural abundance 13C analysis) and modelling simulation (using the RothC model and catchment implications explored using a floodplain evolution model). Sedimentation and carbon accumulation rates were 5–6 times greater in the ACB than the floodplain. Carbon decomposition rates also varied with geomorphic setting. In floodplain cores, faster decomposition rates were indicated by greater 13C-enrichment and subsoils dominated by mineral-associated soil organic carbon. Whereas, in the ACB, carbon was less processed and 13C-depleted, with light fraction and macroaggregate-carbon throughout the cores, and RothC modelled decomposition rates were 4-fold less than lowland floodplain cores. Including the ACB in floodplain carbon MRT calculations increased overall MRT by 10%. The major differences in the balance of sedimentation and decomposition rates between active and inactive floodplains suggests the relative extent of these contrasting zones is critical to the overall carbon balance. Restoration projects could enhance soil carbon storage by maximizing active floodplain areas by increasing river channel complexity.Natural Environment Research CouncilNatural Environment Research Counci

Analysing and simulating spatial patterns of crop yield in Guizhou Province based on artificial neural networks

Supplemental material for this article is available online.This is the author accepted manuscript, the final version is available from SAGE via the DOI in this record.The area of karst terrain in China covers 3.63×106 km2, with more than 40% in the southwestern region over the Guizhou Plateau. Karst comprises exposed carbonate bedrock over approximately 1.30×106 km2 of this area, which suffers from soil degradation and poor crop yield. This paper aims to gain a better understanding of the environmental controls on crop yield in order to enable more sustainable use of natural resources for food production and development. More precisely, four kinds of artificial neural network were used to analyse and simulate the spatial patterns of crop yield for seven crop species grown in Guizhou Province, exploring the relationships with meteorological, soil, irrigation and fertilization factors. The results of spatial classification showed that most regions of high-level crop yield per area and total crop yield are located in the central-north area of Guizhou. Moreover, the three artificial neural networks used to simulate the spatial patterns of crop yield all demonstrated a good correlation coefficient between simulated and true yield. However, the Back Propagation network had the best performance based on both accuracy and runtime. Among the 13 influencing factors investigated, temperature (16.4%), radiation (15.3%), soil moisture (13.5%), fertilization of N (13.5%) and P (12.4%) had the largest contribution to crop yield spatial distribution. These results suggest that neural networks have potential application in identifying environmental controls on crop yield and in modelling spatial patterns of crop yield, which could enable local stakeholders to realize sustainable development and crop production goals.Natural Environment Research Council (NERC)National Natural Science Foundation of ChinaChina Scholarship Counci

BREATHER (PENTA 16) short-cycle therapy (SCT) (5 days on/2 days off) in young people with chronic human immunodeficiency virus infection: an open, randomised, parallel-group Phase II/III trial.

BACKGROUND: For human immunodeficiency virus (HIV)-infected adolescents facing lifelong antiretroviral therapy (ART), short-cycle therapy (SCT) with long-acting agents offers the potential for drug-free weekends, less toxicity, better adherence and cost savings. OBJECTIVES: To determine whether or not efavirenz (EFV)-based ART in short cycles of 5 days on and 2 days off is as efficacious (in maintaining virological suppression) as continuous EFV-based ART (continuous therapy; CT). Secondary objectives included the occurrence of new clinical HIV events or death, changes in immunological status, emergence of HIV drug resistance, drug toxicity and changes in therapy. DESIGN: Open, randomised, non-inferiority trial. SETTING: Europe, Thailand, Uganda, Argentina and the USA. PARTICIPANTS: Young people (aged 8-24 years) on EFV plus two nucleoside reverse transcriptase inhibitors and with a HIV-1 ribonucleic acid level [viral load (VL)] of  12 months. INTERVENTIONS: Young people were randomised to continue daily ART (CT) or change to SCT (5 days on, 2 days off ART). MAIN OUTCOME MEASURES: Follow-up was for a minimum of 48 weeks (0, 4 and 12 weeks and then 12-weekly visits). The primary outcome was the difference between arms in the proportion with VL > 50 copies/ml (confirmed) by 48 weeks, estimated using the Kaplan-Meier method (12% non-inferiority margin) adjusted for region and age. RESULTS: In total, 199 young people (11 countries) were randomised (n = 99 SCT group, n = 100 CT group) and followed for a median of 86 weeks. Overall, 53% were male; the median age was 14 years (21% ≥ 18 years); 13% were from the UK, 56% were black, 19% were Asian and 21% were Caucasian; and the median CD4% and CD4 count were 34% and 735 cells/mm(3), respectively. By week 48, only one participant (CT) was lost to follow-up. The SCT arm had a 27% decreased drug exposure as measured by the adherence questionnaire and a MEMSCap(™) Medication Event Monitoring System (MEMSCap Inc., Durham, NC, USA) substudy (median cap openings per week: SCT group, n = 5; CT group, n = 7). By 48 weeks, six participants in the SCT group and seven in the CT group had a confirmed VL > 50 copies/ml [difference -1.2%, 90% confidence interval (CI) -7.3% to 4.9%] and two in the SCT group and four in the CT group had a confirmed VL > 400 copies/ml (difference -2.1%, 90% CI -6.2% to 1.9%). All six participants in the SCT group with a VL > 50 copies/ml resumed daily ART, of whom five were resuppressed, three were on the same regimen and two with a switch; two others on SCT resumed daily ART for other reasons. Overall, three participants in the SCT group and nine in the CT group (p = 0.1) changed ART regimen, five because of toxicity, four for simplification reasons, two because of compliance issues and one because of VL failure. Seven young people (SCT group, n = 2; CT group, n = 5) had major non-nucleoside reverse transcriptase inhibitor mutations at VL failure, of whom two (n = 1 SCT group, n = 1 CT group) had the M184V mutation. Two young people had new Centers for Disease Control B events (SCT group, n = 1; CT group, n = 1). There were no significant differences between SCT and CT in grade 3/4 adverse events (13 vs. 14) or in serious adverse events (7 vs. 6); there were fewer ART-related adverse events in the SCT arm (2 vs. 14; p = 0.02). At week 48 there was no evidence that SCT led to increased inflammation using an extensive panel of markers. Young people expressed a strong preference for SCT in a qualitative substudy and in pre- and post-trial questionnaires. In total, 98% of the young people are taking part in a 2-year follow-up extension of the trial. CONCLUSIONS: Non-inferiority of VL suppression in young people on EFV-based first-line ART with a VL of < 50 copies/ml was demonstrated for SCT compared with CT, with similar resistance, safety and inflammatory marker profiles. The SCT group had fewer ART-related adverse events. Further evaluation of the immunological and virological impact of SCT is ongoing. A limitation of the trial is that the results cannot be generalised to settings where VL monitoring is either not available or infrequent, nor to use of low-dose EFV. Two-year extended follow-up of the trial is ongoing to confirm the durability of the SCT strategy. Further trials of SCT in settings with infrequent VL monitoring and with other antiretroviral drugs such as tenofovir alafenamide, which has a long intracellular half-life, and/or dolutegravir, which has a higher barrier to resistance, are planned. TRIAL REGISTRATION: Current Controlled Trials ISRCTN97755073; EUDRACT 2009-012947-40; and CTA 27505/0005/001-0001. FUNDING: This project was funded by the National Institute for Health Research (NIHR) Health Technology Assessment programme (projects 08/53/25 and 11/136/108), the European Commission through EuroCoord (FP7/2007/2015), the Economic and Social Research Council, the PENTA Foundation, the Medical Research Council and INSERM SC10-US19, France, and will be published in full in Health Technology Assessment; Vol. 20, No. 49. See the NIHR Journals Library website for further project information

Design and deployment of semiochemical traps for capturing 1 Anthonomus rubi Herbst (Coleoptera: Curculionidae) and Lygus rugulipennis Poppius (Hetereoptera: Miridae) in soft fruit crops

Strawberry blossom weevil (SBW), Anthonomus rubi Herbst (Coleoptera: Curculionidae) and European tarnished plant bug (ETB), Lygus rugulipennis Poppius (Hetereoptera: Miridae), cause significant damage to strawberry and raspberry crops. Using the SBW aggregation pheromone and ETB sex pheromone we optimized and tested a single trap for both species. A series of field experiments in crops and semi-natural habitats in five European countries tested capture of the target pests and the ability to avoid captures of beneficial arthropods. A Unitrap containing a trapping agent of water and detergent and with a cross vane was more efficient at capturing both species compared to traps which incorporated glue as a trapping agent. Adding a green cross vane deterred attraction of non-pest species such as bees, but did not compromise catches of the target pests. The trap caught higher numbers of ETB and SBW if deployed at ground level and although a cross vane was not important for catches of ETB it was needed for significant captures of SBW. The potential for mass trapping SBW and ETB simultaneously in soft fruit crops is discussed including potential improvements to make this more effective and economic to deploy