104 research outputs found

    Wittgenstein and the Problem of Abusive Language

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    These days, more and more social movements are focusing on changing the ways we speak. As a result of these movements, words that were once commonplace until quite recently are being pushed out of our language because of their power to hurt people. This tells us that political groups recognize the power of words to greatly damage us. In this paper, I explore Wittgenstein’s philosophy of language in order to shed light on how we can use language to insult each other. Both the early and the later Wittgenstein are able to account, in some respects, for how we understand insults. Insults rely first on there being a fact that someone can point out about us and second on an injurious normative judgment about these facts. By outlining Wittgenstein’s ideas in both Tractatus Logico-Philosoficus and Philosophical Investigations we are able to create an account of how we can understand these abusive uses of language. Additionally, we can use the later ideas of the Philosophical Investigations, especially his criticisms of his earlier work, to account for how these groups are able to change language and attempt to remove these abusive uses of language

    Improved deoxyribozymes for synthesis of covalently branched DNA and RNA

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    A covalently branched nucleic acid can be synthesized by joining the 2β€²-hydroxyl of the branch-site ribonucleotide of a DNA or RNA strand to the activated 5β€²-phosphorus of a separate DNA or RNA strand. We have previously used deoxyribozymes to synthesize several types of branched nucleic acids for experiments in biotechnology and biochemistry. Here, we report in vitro selection experiments to identify improved deoxyribozymes for synthesis of branched DNA and RNA. Each of the new deoxyribozymes requires Mn2+ as a cofactor, rather than Mg2+ as used by our previous branch-forming deoxyribozymes, and each has an initially random region of 40 rather than 22 or fewer combined nucleotides. The deoxyribozymes all function by forming a three-helix-junction (3HJ) complex with their two oligonucleotide substrates. For synthesis of branched DNA, the best new deoxyribozyme, 8LV13, has kobs on the order of 0.1 minβˆ’1, which is about two orders of magnitude faster than our previously identified 15HA9 deoxyribozyme. 8LV13 also functions at closer-to-neutral pH than does 15HA9 (pH 7.5 versus 9.0) and has useful tolerance for many DNA substrate sequences. For synthesis of branched RNA, two new deoxyribozymes, 8LX1 and 8LX6, were identified with broad sequence tolerances and substantial activity at pH 7.5, versus pH 9.0 for many of our previous deoxyribozymes that form branched RNA. These experiments provide new, and in key aspects improved, practical catalysts for preparation of synthetic branched DNA and RNA

    Sheared Flow As A Stabilizing Mechanism In Astrophysical Jets

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    It has been hypothesized that the sustained narrowness observed in the asymptotic cylindrical region of bipolar outflows from Young Stellar Objects (YSO) indicates that these jets are magnetically collimated. The j cross B force observed in z-pinch plasmas is a possible explanation for these observations. However, z-pinch plasmas are subject to current driven instabilities (CDI). The interest in using z-pinches for controlled nuclear fusion has lead to an extensive theory of the stability of magnetically confined plasmas. Analytical, numerical, and experimental evidence from this field suggest that sheared flow in magnetized plasmas can reduce the growth rates of the sausage and kink instabilities. Here we propose the hypothesis that sheared helical flow can exert a similar stabilizing influence on CDI in YSO jets.Comment: 13 pages, 2 figure

    Pleosporales

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    One hundred and five generic types of Pleosporales are described and illustrated. A brief introduction and detailed history with short notes on morphology, molecular phylogeny as well as a general conclusion of each genus are provided. For those genera where the type or a representative specimen is unavailable, a brief note is given. Altogether 174 genera of Pleosporales are treated. Phaeotrichaceae as well as Kriegeriella, Zeuctomorpha and Muroia are excluded from Pleosporales. Based on the multigene phylogenetic analysis, the suborder Massarineae is emended to accommodate five families, viz. Lentitheciaceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae and Trematosphaeriaceae

    A study protocol to evaluate the relationship between outdoor air pollution and pregnancy outcomes

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    <p>Abstract</p> <p>Background</p> <p>The present study protocol is designed to assess the relationship between outdoor air pollution and low birth weight and preterm births outcomes performing a semi-ecological analysis. Semi-ecological design studies are widely used to assess effects of air pollution in humans. In this type of analysis, health outcomes and covariates are measured in individuals and exposure assignments are usually based on air quality monitor stations. Therefore, estimating individual exposures are one of the major challenges when investigating these relationships with a semi-ecologic design.</p> <p>Methods/Design</p> <p>Semi-ecologic study consisting of a retrospective cohort study with ecologic assignment of exposure is applied. Health outcomes and covariates are collected at Primary Health Care Center. Data from pregnant registry, clinical record and specific questionnaire administered orally to the mothers of children born in period 2007-2010 in Portuguese Alentejo Litoral region, are collected by the research team. Outdoor air pollution data are collected with a lichen diversity biomonitoring program, and individual pregnancy exposures are assessed with spatial geostatistical simulation, which provides the basis for uncertainty analysis of individual exposures. Awareness of outdoor air pollution uncertainty will improve validity of individual exposures assignments for further statistical analysis with multivariate regression models.</p> <p>Discussion</p> <p>Exposure misclassification is an issue of concern in semi-ecological design. In this study, personal exposures are assigned to each pregnant using geocoded addresses data. A stochastic simulation method is applied to lichen diversity values index measured at biomonitoring survey locations, in order to assess spatial uncertainty of lichen diversity value index at each geocoded address. These methods assume a model for spatial autocorrelation of exposure and provide a distribution of exposures in each study location. We believe that variability of simulated exposure values at geocoded addresses will improve knowledge on variability of exposures, improving therefore validity of individual exposures to input in posterior statistical analysis.</p

    Regulation of Translation in Haloarchaea: 5β€²- and 3β€²-UTRs Are Essential and Have to Functionally Interact In Vivo

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    Recently a first genome-wide analysis of translational regulation using prokaryotic species had been performed which revealed that regulation of translational efficiency plays an important role in haloarchaea. In fact, the fractions of genes under differential growth phase-dependent translational control in the two species Halobacterium salinarum and Haloferax volcanii were as high as in eukaryotes. However, nothing is known about the mechanisms of translational regulation in archaea. Therefore, two genes exhibiting opposing directions of regulation were selected to unravel the importance of untranslated regions (UTRs) for differential translational control in vivo

    Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function

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    Riboswitches are RNAs that modulate gene expression by ligand-induced conformational changes. However, the way in which sequence dictates alternative folding pathways of gene regulation remains unclear. In this study, we compute energy landscapes, which describe the accessible secondary structures for a range of sequence lengths, to analyze the transcriptional process as a given sequence elongates to full length. In line with experimental evidence, we find that most riboswitch landscapes can be characterized by three broad classes as a function of sequence length in terms of the distribution and barrier type of the conformational clusters: low-barrier landscape with an ensemble of different conformations in equilibrium before encountering a substrate; barrier-free landscape in which a direct, dominant β€œdownhill” pathway to the minimum free energy structure is apparent; and a barrier-dominated landscape with two isolated conformational states, each associated with a different biological function. Sharing concepts with the β€œnew view” of protein folding energy landscapes, we term the three sequence ranges above as the sensing, downhill folding, and functional windows, respectively. We find that these energy landscape patterns are conserved in various riboswitch classes, though the order of the windows may vary. In fact, the order of the three windows suggests either kinetic or thermodynamic control of ligand binding. These findings help understand riboswitch structure/function relationships and open new avenues to riboswitch design

    Z-pinch Vlasov-fluid equilibria including sheared-axial flow

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