Human pregnancy complicated by Chlamydia psittaci acquired from goat, a new zaonotic infection ?

Nous rapportons le cas d’une femme dont la grossesse s’est spontané ment interrompue à 32 semaines d’aménorrhée en raison d’une infection très sévère par Chlamydia psittaci. Cette infection est secondaire à un contact avec un troupeau de chèvres. Neuf cas d’infection materno-fœtale par Chlamydia psittaci d’origine animale sont décrits dans la littérature, il s’agit toujours d’une contamination par les brebis atteintes de chlamydiose abortive. La chèvre peut également être infectée par ce germe, mais la trans mission à la femme enceinte de la chlamydiose abortive caprine n’a pas été décrit jusqu’à présent.A case of chlamydial infection in pregnant woman is described. This infection was contracted from goat. The woman, who had contact with caprine abortion, spontaneously delivered a stillborn infant in the 32nd week of pregnancy. She developed dessiminated intravascular coagulation post partum with acute renal failure and pulmonary oedema. Nine cases of chlamydial infections in pregnant women have been reported in literature, in all cases, the infection was contracted from ewes suffering from enzootic abortion. Such an infection acquired from goat have not been previously described

Mitochondrial dynamics and disease, OPA1

AbstractThe mitochondria are dynamic organelles that constantly fuse and divide. An equilibrium between fusion and fission controls the morphology of the mitochondria, which appear as dots or elongated tubules depending the prevailing force. Characterization of the components of the fission and fusion machineries has progressed considerably, and the emerging question now is what role mitochondrial dynamics play in mitochondrial and cellular functions. Its importance has been highlighted by the discovery that two human diseases are caused by mutations in the two mitochondrial pro-fusion genes, MFN2 and OPA1. This review will focus on data concerning the function of OPA1, mutations in which cause optic atrophy, with respect to the underlying pathophysiological processes

The use of gestures in the conversations of people with aphasia

Background: Gestures are spontaneous hand and arm movements that frequently accompany speech and play an important role in everyday communication. When communication is impaired by aphasia, gestures are affected as well. It is important to find out how people with aphasia (PWA) use gesture as an accompaniment to speech, as a compensatory modality, and during lexical retrieval. This novel study examined the use and functions of gesture in conversation and investigated parameters (i.e., conversation partner, topic, and participant factors) that could have an influence on gesture production. Methodology: Language and conversation data of 20 PWA and 21 neurologically healthy participants (NHP) were collected. Participants took part in conversations with two conversation partners (familiar and unfamiliar) and two conversation topics (narrative and procedural). Video samples were analysed for gesture production, speech production, and word-finding difficulties (WFD). Results: The two groups of participants produced a similar number of gestures (t (37) = -1.060, p = .296). Gesture type was not examined statistically but showed some marginal differences between groups. Unfamiliar conversation partners elicited significantly more gestures than familiar conversation partners (F (1, 37) = 24.358, p < .001). Additionally, participants produced significantly more gestures in procedural than in narrative topics (F (1, 37) =44.807, p < .001). While all participants experienced a similar number of WFD, there was a difference between PWA and NHP regarding gesture production and resolution of WFD: NHP resolved the majority of all WFD, independent of a co-occurring gesture. Nevertheless, for PWA and NHP, there was a significant relationship between gesture production and the resolution of the WFD (X2 (1) = 12.356, p < .01 for PWA and X2 (1) = 40.657, p < .01 for NHP), indicating that WFD that occurred with gestures were more likely to be resolved than WFD that occurred without gesture production. Participants used gestures with different functions, such as facilitative gestures to resolve WFD or augmentative gestures to supplement speech. For PWA, different participant factures, such as fluency of speech (rs (17) = .487, p = .035), lexical production skills (rs (17) = .584, p = .009), and cognition (rs (17) = .582, p = .009) were linked to gesture production. Conclusions: These findings shed light on gesture processing and the different functions gestures can serve within conversation. Furthermore, they highlight the importance of pragmatic influence, such as conversation topic and conversation partner on the production of gestures. The significant relationships between participant factors and gesture production in aphasia extend the understanding of relevant skills needed to successfully employ gestures in conversation. Next to language skills, such as speech fluency and lexical retrieval, cognitive skills affected gesture production as well

Genome sequencing of Xanthomonas axonopodis pv. phaseoli CFBP4834-R reveals that flagellar motility is not a general feature of xanthomonads.

Xanthomonads are plant-associated bacteria that establish neutral, commensal or pathogenic relationships with plants. The list of common characteristics shared by all members of the genus Xanthomonas is now well established based on the entire genome sequences that are currently available and that represent various species, numerous pathovars of X. axonopodis (sensu Vauterin et al., 2000), X. oryzae and X. campestris, and many strains within some pathovars. These ?-proteobacteria are motile by a single polar flagellum. Motility is an important feature involved in biofilm formation, plant colonization and hence considered as a pathogenicity factor. X. axonopodis pv. phaseoli var. fuscans (Xapf) is one of the causal agents of common bacterial blight of bean and 4834-R is a highly aggressive strain of this pathogen that was isolated from a seed-borne epidemic in France in 1998. We obtained a high quality assembled sequence of the genome of this strain with 454-Solexa and 2X Sanger sequencing. Housekeeping functions are conserved in this genome that shares core characteristics with genomes of other xanthomonads: the six secretion systems which have been described so far in Gram negative bacteria are all present, as well as their ubiquitous substrates or effectors and a rather usual number of mobile elements. Elements devoted to the adaptation to the environment constitute an important part of the genome with a chemotaxis island and dispersed MCPs, numerous two-component systems, and numerous TonB dependent transporters. Furthermore, numerous multidrug efflux systems and functions dedicated to biofilm formation that confer resistance to stresses are also present. An intriguing feature revealed by genome analysis is a long deletion of 35 genes (33 kbp) involved in flagellar biosynthesis. This deletion is replaced by an insertion sequence called ISXapf2. Genes such as flgB to flgL and fliC to fleQ which are involved in the flagellar structure (rod, P- and L-ring, hook, cap and filament) are absent in the genome of strain 4834-R that is not motile. Primers were designed to detect this deletion by PCR in a collection of more than 300 strains representing different species and pathovars of Xanthomonas, and less than 5% of the tested xanthomonads strains were found nonmotile because of a deletion in the flagellum gene cluster. We observed that half of the Xapf strains isolated from the same epidemic than strain 4834-R was non-motile and that this ratio was conserved in the strains colonizing the next bean seed generation. Isolation of such variants in a natural epidemic reveals that either flagellar motility is not a key function for fitness or that some complementation occurs within the bacterial population. (Résumé d'auteur

Inferring causal molecular networks: empirical assessment through a community-based effort

Inferring molecular networks is a central challenge in computational biology. However, it has remained unclear whether causal, rather than merely correlational, relationships can be effectively inferred in complex biological settings. Here we describe the HPN-DREAM network inference challenge that focused on learning causal influences in signaling networks. We used phosphoprotein data from cancer cell lines as well as in silico data from a nonlinear dynamical model. Using the phosphoprotein data, we scored more than 2,000 networks submitted by challenge participants. The networks spanned 32 biological contexts and were scored in terms of causal validity with respect to unseen interventional data. A number of approaches were effective and incorporating known biology was generally advantageous. Additional sub-challenges considered time-course prediction and visualization. Our results constitute the most comprehensive assessment of causal network inference in a mammalian setting carried out to date and suggest that learning causal relationships may be feasible in complex settings such as disease states. Furthermore, our scoring approach provides a practical way to empirically assess the causal validity of inferred molecular networks

Inferring causal molecular networks: empirical assessment through a community-based effort

It remains unclear whether causal, rather than merely correlational, relationships in molecular networks can be inferred in complex biological settings. Here we describe the HPN-DREAM network inference challenge, which focused on learning causal influences in signaling networks. We used phosphoprotein data from cancer cell lines as well as in silico data from a nonlinear dynamical model. Using the phosphoprotein data, we scored more than 2,000 networks submitted by challenge participants. The networks spanned 32 biological contexts and were scored in terms of causal validity with respect to unseen interventional data. A number of approaches were effective, and incorporating known biology was generally advantageous. Additional sub-challenges considered time-course prediction and visualization. Our results suggest that learning causal relationships may be feasible in complex settings such as disease states. Furthermore, our scoring approach provides a practical way to empirically assess inferred molecular networks in a causal sense

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

Abstract\ud \ud \ud \ud Background\ud Xanthomonads are plant-associated bacteria responsible for diseases on economically important crops. Xanthomonas fuscans subsp. fuscans (Xff) is one of the causal agents of common bacterial blight of bean. In this study, the complete genome sequence of strain Xff 4834-R was determined and compared to other Xanthomonas genome sequences.\ud \ud \ud \ud Results\ud Comparative genomics analyses revealed core characteristics shared between Xff 4834-R and other xanthomonads including chemotaxis elements, two-component systems, TonB-dependent transporters, secretion systems (from T1SS to T6SS) and multiple effectors. For instance a repertoire of 29 Type 3 Effectors (T3Es) with two Transcription Activator-Like Effectors was predicted. Mobile elements were associated with major modifications in the genome structure and gene content in comparison to other Xanthomonas genomes. Notably, a deletion of 33 kbp affects flagellum biosynthesis in Xff 4834-R. The presence of a complete flagellar cluster was assessed in a collection of more than 300 strains representing different species and pathovars of Xanthomonas. Five percent of the tested strains presented a deletion in the flagellar cluster and were non-motile. Moreover, half of the Xff strains isolated from the same epidemic than 4834-R was non-motile and this ratio was conserved in the strains colonizing the next bean seed generations.\ud \ud \ud \ud Conclusions\ud This work describes the first genome of a Xanthomonas strain pathogenic on bean and reports the existence of non-motile xanthomonads belonging to different species and pathovars. Isolation of such Xff variants from a natural epidemic may suggest that flagellar motility is not a key function for in planta fitness.AI is funded by a PhD grant from INRA-SPE and region Pays de la Loire, France. EG was funded by a PhD grant from the French Ministry of National Education and Research and French Guyana. SC, EG, MA, EL and LDN are funded by the LABEX TULIP (ANR-10-LABX-41), LSG is funded by ANR-2010-GENM-013 Xanthomix