Assessment of Ba/Ca in Arctica islandica shells as a proxy for phytoplankton dynamics in the Northwestern Atlantic Ocean

International audienceDespite its major role as a global climate regulator, little is known about the recent evolution of the North Atlantic Ocean, especially prior to the fifties, principally because of the lack of long-term instrumental data. Moreover, the North Atlantic Ocean is undergoing rapid changes at the physical scale leading to modifications at the biological scale increasing interest to monitor the environment. The phytoplankton is the base of the ocean life and its perturbation can lead to further changes in the food chain. Recording its dynamics implies to observe both its spatial and temporal variations. This study brings forward the use of the Ba/Ca ratio from shells of the long-living bivalve Arctica islandica collected in the Northwestern Atlantic Ocean near Saint-Pierre and Miquelon (SPM) as a recorder of the past and present phytoplankton dynamics. A high inter and intra-reproducibility and synchrony between Ba/Cashell profiles were demonstrated allowing the reconstruction of a 124 years annually-resolved Ba/Cashell master chronology (from 1893 to 2016). This master chronology was positively correlated to the surface chlorophyll a measured by satellite sensor at regional (around SPM) and global scales (Northwestern Atlantic)

Heme Uptake in Lactobacillus sakei Evidenced by a New Energy Coupling Factor (ECF)-Like Transport System

International audienceLactobacillus sakei is a non-pathogenic lactic acid bacterium and a natural inhabitant of meat ecosystems. Although red meat is a heme-rich environment, L. sakei does not need iron or heme for growth, while possessing a heme-dependent catalase. Iron incorporation into L. sakei from myoglobin and hemoglobin was formerly shown by microscopy and the L. sakei genome reveals the complete equipment for iron and heme transport. Here, we report the characterization of a five-gene cluster (lsa1836-1840) encoding a putative metal iron ABC transporter. Interestingly, this cluster, together with a heme dependent catalase gene, is also conserved in other species from the meat ecosystem. Our bioinformatic analyses revealed that the locus might correspond to a complete machinery of an Energy Coupling Factor (ECF) transport system. We quantified in vitro the intracellular heme in wild-type (WT) and in our Δlsa1836-1840 deletion mutant using an intracellular heme sensor and ICP-Mass spectrometry for quantifying incorporated 57Fe heme. We showed that in the WT L. sakei, heme accumulation occurs rapidly and massively in the presence of hemin, while the deletion mutant was impaired in heme uptake; this ability was restored by in trans complementation. Our results establish the main role of the L. sakei Lsa1836-1840 ECF-like system in heme uptake. Therefore, this research outcome sheds new light on other possible functions of ECF-like systems.Importance Lactobacillus sakei is a non-pathogenic bacterial species exhibiting high fitness in heme rich environments such as meat products, although it does not need iron nor heme for growth. Heme capture and utilization capacities are often associated with pathogenic species and are considered as virulence-associated factors in the infected hosts. For these reasons, iron acquisition systems have been deeply studied in such species, while for non-pathogenic bacteria the information is scarce. Genomic data revealed that several putative iron transporters are present in the genome of the lactic acid bacterium L. sakei. In this study, we demonstrate that one of them, is an ECF-like ABC transporter with a functional role in heme transport. Such evidence has not yet been brought for an ECF, therefore our study reveals a new class of heme transport system

In vitro simulation of oxic/suboxic diagenesis in an estuarine fluid mud subjected to redox oscillations

Estuarine turbidity maxima (ETMs) are sites of intense mineralisation of land-derived particulate organic matter (OM), which occurs under oxic/suboxic oscillating conditions owing to repetitive sedimentation and resuspension cycles at tidal and neap-spring time scales. To investigate the biogeochemical processes involved in OM mineralisation in ETMs, an experimental set up was developed to simulate in vitro oxic/anoxic oscillations in turbid waters and to follow the short timescale changes in oxygen, carbon, nitrogen, and manganese concentration and speciation. We present here the results of a 27-day experiment (three oxic periods and two anoxic periods) with an estuarine fluid mud from the Gironde estuary. Time courses of chemical species throughout the experiment evidenced the occurrence of four distinct characteristic periods with very different properties. Steady oxic conditions were characterised by oxygen consumption rates between 10 and 40 mu mol L-1 h(-1), dissolved inorganic carbon (DIC) production of 9-12 mu mol L-1 h(-1), very low NE4+ and Mn2+ concentrations, and constant NO3 production rates (0.4 - 0.7 mu mol L-1 h(-1)) due to coupled ammonification and nitrification. The beginning of anoxic periods (24 h following oxic to anoxic switches) showed DIC production rates of 2.5-8.6 mu mol L-1 h(-1) and very fast NO consumption (5.6-6.3 mu mol L-1 h(-1)) and NH4+ production (1.4-1.5 mu mol L-1 h(-1)). The latter rates were positively correlated to NO concentration and were apparently caused by the predominance of denitrification and dissimilatory nitrate reduction to ammonia. Steady anoxic periods were characterised by constant and low NO3- concentrations and DIG and NH4+ productions of less than 1.3 and 0.1 mu mol L-1 h(-1), respectively. Mn2+ and CH4 were produced at constant rates (respectively 0.3 and 0.015 mu mol L-1 h(-1)) throughout the whole anoxic periods and in the presence of nitrate. Finally, reoxidation periods (24-36 h following anoxic to oxic switches) showed rapid NH4+ and Mn2+ decreases to zero (1.6 and 0.8-2 mu mol L-1 h(-1), respectively) and very fast NO production (3 mu mol L-1 h(-1)). This NO3- production, together with marked transient peaks of dissolved organic carbon a few hours after anoxic to oxic switches, suggested that particulate OM mineralisation was enhanced during these transient reoxidation periods. An analysis based on C and N mass balance suggested that redox oscillation on short time scales (day to week) enhanced OM mineralisation relative to both steady oxic and steady anoxic conditions, making ETMs efficient biogeochemical reactors for the mineralisation of refractory terrestrial OM at the land-sea interface. (C) 2010 Elsevier Ltd. All rights reserved

The MALINA oceanographic expedition: how do changesin ice cover, permafrost and UV radiation impactbiodiversity and biogeochemical fluxesin the Arctic Ocean?

International audienceThe MALINA oceanographic campaign was conducted during summer 2009 to investigate the carbon stocks and the processes controlling the carbon fluxes in the Mackenzie River estuary and the Beaufort Sea. Dur- ing the campaign, an extensive suite of physical, chemical and biological variables was measured across seven shelf–basin transects (south-north) to capture the meridional gradient between the estuary and the open ocean.Key variables such as temperature, absolute salinity, radiance, irradiance, nutrient concentrations, chlorophyll-a concentration, bacteria, phytoplankton and zooplankton abundance and taxonomy, and carbon stocks and fluxes were routinely measured onboard the Canadian research icebreaker CCGS Amundsen and from a barge in shallow coastal areas or for sampling within broken ice fields. Here, we present the results of a joint effort to tidy and standardize the collected data sets that will facilitate their reuse in further studies of the changing Arctic Ocean