Effects of increasing the farm produced content in organic feeds on pig performances

In three experimental facilities (Exp.1, 2 and 3), two organic diets, one complex including processed feedstuffs as wheat bran and heat-treated soya beans (control), the other simplified and containing over 80 % of cereal and pulses (CP), were compared for growing-finishing pigs. The base components of the CP diets were moist maize grain, wheat and faba beans in Exp.1, triticale plus coloured-flowered peas in Exp.2, and triticale, oats, white-flowered peas and faba beans in Exp.3. The diets were formulated with similar energetic values and a lysine content (0.70 g ileal digestible lysine /MJ NE) 20 % lower than the conventional mean requirement for growing pigs. However, the CP diet had a lysine proportion 30% lower than requirement in Exp.1 and did not achieve the ideal protein pattern in Exp. 2 and 3. Diets were given in all experiments from 35 to 115 kg according to a feeding plan. Respectively 96, 100 and 80 pigs were used in Exp.1, 2 and 3 and were blocked in straw bedded pens of 4, 25 and 40. In Exp.1, pigs receiving the control diet had a lower average feed intake than those offered the CP diet (p0.05), 760 and 719 in Exp.2 (p=0.04) and 684 and 677 in Exp.3 (p>0.05). The feed conversion rate (g/g) was high and reached respectively 3.28 and 3.41 in Exp.1 (p=0.01), 3.2 and 3.,4 in Exp.2, 3.3 and 3.4 in Exp.3. The lean meat rate did not differ significantly in Exp.1, 2 and 3, for pigs given control and CP diets. The study underlines that with a moderate growth objective, an organic feed with a low energetic and protein concentration can yield a satisfying lean meat rate. In spite of a tendency for lower performances, especially concerning the feed conversion rate, a simplified diet based on cereal and pulses can be used, taking into account its economical interest for organic pig production

Pore evolution in interstellar ice analogues: simulating the effects of temperature increase

Context. The level of porosity of interstellar ices - largely comprised of amorphous solid water (ASW) - contains clues on the trapping capacity of other volatile species and determines the surface accessibility that is needed for solid state reactions to take place. Aims. Our goal is to simulate the growth of amorphous water ice at low temperature (10 K) and to characterize the evolution of the porosity (and the specific surface area) as a function of temperature (from 10 to 120 K). Methods. Kinetic Monte Carlo simulations are used to mimic the formation and the thermal evolution of pores in amorphous water ice. We follow the accretion of gas-phase water molecules as well as their migration on surfaces with different grid sizes, both at the top growing layer and within the bulk. Results. We show that the porosity characteristics change substantially in water ice as the temperature increases. The total surface of the pores decreases strongly while the total volume decreases only slightly for higher temperatures. This will decrease the overall reaction efficiency, but in parallel, small pores connect and merge, allowing trapped molecules to meet and react within the pores network, providing a pathway to increase the reaction efficiency. We introduce pore coalescence as a new solid state process that may boost the solid state formation of new molecules in space and has not been considered so far.Comment: 9 pages, 8 figures Accepted for publication in A&

Space-time evolution of electron cascades in diamond

Here we describe model calculations to follow the spatio-temporal evolution of secondary electron cascades in diamond. The band structure of the insulator has been explicitly incorporated into the calculations as it affects ionizations from the valence band. A Monte-Carlo model was constructed to describe the path of electrons following the impact of a single electron of energy E 250 eV. The results show the evolution of the secondary electron cascades in terms of the number of electrons liberated, the spatial distribution of these electrons, and the energy distribution among the electrons as a function of time. The predicted ionization rates (5-13 electrons in 100 fs) lie within the limits given by experiments and phenomenological models. Calculation of the local electron density and the corresponding Debye length shows that the latter is systematically larger than the radius of the electron cloud. This means that the electron gas generated does not represent a plasma in a single impact cascade triggered by an electron of E 250 eV energy. This is important as it justifies the independent-electron approximation used in the model. At 1 fs, the (average) spatial distribution of secondary electrons is anisotropic with the electron cloud elongated in the direction of the primary impact. The maximal radius of the cascade is about 50 A at this time. As the system cools, energy is distributed more equally, and the spatial distribution of the electron cloud becomes isotropic. At 90 fs maximal radius is about 150 A. The Monte-Carlo model described here could be adopted for the investigation of radiation damage in other insulators and has implications for planned experiments with intense femtosecond X-ray sources.Comment: 26 pages, latex, 13 figure

The first frost in the Pipe Nebula

Spectroscopic studies of ices in nearby star-forming regions indicate that ice mantles form on dust grains in two distinct steps, starting with polar ice formation (H2O rich) and switching to apolar ice (CO rich). We test how well the picture applies to more diffuse and quiescent clouds where the formation of the first layers of ice mantles can be witnessed. Medium-resolution near-infrared spectra are obtained toward background field stars behind the Pipe Nebula. The water ice absorption is positively detected at 3.0 micron in seven lines of sight out of 21 sources for which observed spectra are successfully reduced. The peak optical depth of the water ice is significantly lower than those in Taurus with the same visual extinction. The source with the highest water-ice optical depth shows CO ice absorption at 4.7 micron as well. The fractional abundance of CO ice with respect to water ice is 16+7-6 %, and about half as much as the values typically seen in low-mass star-forming regions. A small fractional abundance of CO ice is consistent with some of the existing simulations. Observations of CO2 ice in the early diffuse phase of a cloud play a decisive role in understanding the switching mechanism between polar and apolar ice formation.Comment: 17 pages, 8 figures, accepted by A&

Finding all maximal perfect haplotype blocks in linear time

Recent large-scale community sequencing efforts allow at an unprecedented level of detail the identification of genomic regions that show signatures of natural selection. Traditional methods for identifying such regions from individuals' haplotype data, however, require excessive computing times and therefore are not applicable to current datasets. In 2019, Cunha et al. (Advances in bioinformatics and computational biology: 11th Brazilian symposium on bioinformatics, BSB 2018, Niteroi, Brazil, October 30 - November 1, 2018, Proceedings, 2018. 10.1007/978-3-030-01722-4_3) suggested the maximal perfect haplotype block as a very simple combinatorial pattern, forming the basis of a new method to perform rapid genome-wide selection scans. The algorithm they presented for identifying these blocks, however, had a worst-case running time quadratic in the genome length. It was posed as an open problem whether an optimal, linear-time algorithm exists. In this paper we give two algorithms that achieve this time bound, one conceptually very simple one using suffix trees and a second one using the positional Burrows-Wheeler Transform, that is very efficient also in practice.Peer reviewe

The role of carbon grains in the deuteration of H2

Aims: The production of molecular hydrogen and its deuterated forms onto carbonaceous dust grains is investigated in detail. The goal of this study is to estimate the importance of the chemistry occuring on grain surfaces for the deuteration of H2. Furthermore, we aim to find a robust and general surface chemical model which can be used in different astrophysical environments. Methods: Surface processes are described for the cases of graphitic and amorphous--carbon grains, where laboratory work is available. Langmuir--Hinshelwood as well as Eley--Rideal surface chemistries are included in the model and their relative contributions are highlighted. Analytic expressions are derived for H2, HD, and D2 formation efficiencies for both type of grains. Rate equations are tested against stochastic methods. Results: As expected, rate equations and stochastic methods diverge for grain sizes lower than a critical value acrit. For grain sizes below this critical value, D2 formation decreases to favour HD formation. The formation efficiencies of H2 and D2 can be calculated by adding a correction factor to the rate equations methods. We found that because of the presence of chemisorbed sites, which can store atoms to form molecules up to high grain temperatures, the formation efficiency of HD and D2 is very high compared to models where only physisorption sites are taken into account. When considering a realistic distribution of dust grains, we found that the formation rate of H2 and HD is enhanced by an order of magnitude if small grains are taken into account. The processes described in this paper, that allow a strong enhancement of the deuterated forms of molecular hydrogen, could explain the high degree of deuterium fractionation observed in protostellar environments.Comment: 17 pages 25 figure

Accretion and photodesorption of CO ice as a function of the incident angle of deposition

Non-thermal desorption of inter- and circum-stellar ice mantles on dust grains, in particular ultraviolet photon-induced desorption, has gained importance in recent years. These processes may account for the observed gas phase abundances of molecules like CO toward cold interstellar clouds. Ice mantle growth results from gas molecules impinging on the dust from all directions and incidence angles. Nevertheless, the effect of the incident angle for deposition on ice photo-desorption rate has not been studied. This work explores the impact on the accretion and photodesorption rates of the incidence angle of CO gas molecules with the cold surface during deposition of a CO ice layer. Infrared spectroscopy monitored CO ice upon deposition at different angles, ultraviolet-irradiation, and subsequent warm-up. Vacuum-ultraviolet spectroscopy and a Ni-mesh measured the emission of the ultraviolet lamp. Molecules ejected from the ice to the gas during irradiation or warm-up were characterized by a quadrupole mass spectrometer. The photodesorption rate of CO ice deposited at 11 K and different incident angles was rather stable between 0 and 45$^{\circ}$. A maximum in the CO photodesorption rate appeared around 70$^{\circ}$-incidence deposition angle. The same deposition angle leads to the maximum surface area of water ice. Although this study of the surface area could not be performed for CO ice, the similar angle dependence in the photodesorption and the ice surface area suggests that they are closely related. Further evidence for a dependence of CO ice morphology on deposition angle is provided by thermal desorption of CO ice experiments

Porosity measurements of interstellar ice mixtures using optical laser interference and extended effective medium approximations

Aims. This article aims to provide an alternative method of measuring the porosity of multi-phase composite ices from their refractive indices and of characterising how the abundance of a premixed contaminant (e.g., CO2) affects the porosity of water-rich ice mixtures during omni-directional deposition. Methods. We combine optical laser interference and extended effective medium approximations (EMAs) to measure the porosity of three astrophysically relevant ice mixtures: H2O:CO2=10:1, 4:1, and 2:1. Infrared spectroscopy is used as a benchmarking test of this new laboratory-based method. Results. By independently monitoring the O-H dangling modes of the different water-rich ice mixtures, we confirm the porosities predicted by the extended EMAs. We also demonstrate that CO2 premixed with water in the gas phase does not significantly affect the ice morphology during omni-directional deposition, as long as the physical conditions favourable to segregation are not reached. We propose a mechanism in which CO2 molecules diffuse on the surface of the growing ice sample prior to being incorporated into the bulk and then fill the pores partly or completely, depending on the relative abundance and the growth temperature.Comment: 9 pages, 6 figures, 1 table. Accepted for publication in A&

Near-arcsecond resolution observations of the hot corino of the solar type protostar IRAS 16293-2422

Complex organic molecules have previously been discovered in solar type protostars, raising the questions of where and how they form in the envelope. Possible formation mechanisms include grain mantle evaporation, interaction of the outflow with its surroundings or the impact of UV/X-rays inside the cavities. In this Letter we present the first interferometric observations of two complex molecules, CH3CN and HCOOCH3, towards the solar type protostar IRAS16293-2422. The images show that the emission originates from two compact regions centered on the two components of the binary system. We discuss how these results favor the grain mantle evaporation scenario and we investigate the implications of these observations for the chemical composition and physical and dynamical state of the two components.Comment: 5 pages (apjemulate), 2 figures; accepted by ApJ

Formation of Water in the Warm Atmospheres of Protoplanetary Disks

The gas-phase chemistry of water in protoplanetary disks is analyzed with a model based on X-ray heating and ionization of the disk atmosphere. Several uncertain processes appear to play critical roles in generating the column densities of warm water that are detected from disks at infrared wavelengths. The dominant factors are the reactions that form molecular hydrogen, including formation on warm grains, and the ionization and heating of the atmosphere. All of these can work together to produce a region of high water abundances in the molecular transition layer of the inner disk atmosphere, where atoms are transformed into molecules, the temperature drops from thousands to hundreds of Kelvins, and the ionization begins to be dominated by the heavy elements. Grain formation of molecular hydrogen and mechanical heating of the atmosphere can play important roles in this region and directly affect the amount of warm water in protoplanetary disk atmospheres. Thus it may be possible to account for the existing measurements of water emission from Tauri disks without invoking transport of water from cooler to warmer regions. The hydroxyl radical OH is under-abundant in this model of disk atmospheres and requires consideration of additional production and excitation processes