The magnetic fields of large Virgo Cluster spirals

Because of its proximity the Virgo Cluster is an excellent target for studying interactions of galaxies with the cluster environment. Both the high-velocity tidal interactions and effects of ram pressure stripping by the intracluster gas can be investigated. Optical and/or \ion{H}{i} observations do not always show effects of weak interactions between galaxies and their encounters with the cluster medium. For this reason we searched for possible anomalies in the magnetic field structure in Virgo Cluster spirals which could be attributed to perturbations in their gas distribution and kinematics. Five angularly large Virgo Cluster spiral galaxies (NGC 4501, NGC 4438, NGC 4535, NGC 4548 and NGC 4654) were the targets for a sensitive total power and polarization study using the 100-m radio telescope in Effelsberg at 4.85 GHz. For two objects polarization data at higher frequencies have been obtained allowing Faraday rotation analysis. Distorted magnetic field structures were identified in all galaxies. Interaction-induced magnetized outflows were found in NGC 4438 (due to nuclear activity) and NGC 4654 (a combination of tidal tails and ram pressure effects). Almost all objects (except the anaemic NGC 4548) exhibit distortions in polarized radio continuum attributable to influence of the ambient gas. For some galaxies they agree with observations of other species, but sometimes (NGC 4535) the magnetic field is the only tracer of the interaction with the cluster environment. The cluster environment clearly affects the evolution of the galaxies due to ram pressure and tidal effects. Magnetic fields provide a very long-lasting memory of past interactions. Therefore, they are a good tracer of weak interactions which are difficult to detect by other observations.Comment: 13 pages, 12 figure

Molecular gas in the Andromeda galaxy

We present a new 12CO(J=1-0)-line survey of the Andromeda galaxy, M31, covering the bright disk with the highest resolution to date (85 pc along the major axis), observed On-the-Fly (in italics) with the IRAM 30-m telescope. We discuss the distribution of the CO emission and compare it with the distributions of HI and emission from cold dust traced at 175mum. Our main results are: 1. Most of the CO emission comes from the radial range R=3-16 kpc, but peaks near R=10 kpc. The emission is con- centrated in narrow, arm-like filaments defining two spiral arms with pitch angles of 7d-8d. The average arm-interarm brightness ratio along the western arms reaches 20 compared to 4 for HI. 2. For a constant conversion factor Xco, the molecular fraction of the neutral gas is enhanced in the arms and decreases radially. The apparent gas-to-dust ratios N(HI)/I175 and (N(HI)+2N(H2))/I175 increase by a factor of 20 between the centre and R=14 kpc, whereas the ratio 2N(H2)/I175 only increases by a factor of 4. Implications of these gradients are discussed. In the range R=8-14 kpc total gas and cold dust are well correlated; molecular gas is better correlated with cold dust than atomic gas.Comment: 21 pages, 16 figures. Accepted for publication in A&

Association of early life factors and brain tumour risk in a cohort study

Using population-based linked birth and cancer registry data, we investigated whether the risk of brain tumour in childhood (n=155) was associated with perinatal risk factors. This population-based cohort showed that being born into a larger family or to a mother with a history of miscarriage may increase childhood brain tumour risk

Turnover of Carbohydrate-Rich Vegetal Matter During Microaerobic Composting and After Amendment in Soil

We propose that microaerobic composting (MC) can be used to decompose vegetal matter with a short turnover time and large carbon (C) recycling potential. We used a novel method for measuring the degree of fragmentation of water-insoluble acid-soluble (WIAS) polysaccharides as a proxy in tracking their relative degree of degradation (i.e., fragmentation endpoint index). Oak leaves and food scrap processed by MC reached a fragmentation end point within 2 weeks. After amending the MC products into soil, the half-life of the polysaccharide residues was ~6–7 times longer (~100–110 days) than that measured during MC. The main products given up during MC were volatile organic acids (VOAs), alcohols and soluble carbohydrates in the compost tea, and CO2. These products accounted for about 2% of the initial carbon in the feedstock. Very small amounts of VOAs, particularly butyric acid, were formed in the amended soil. Based on a residence time of materials in fermentors of 2 weeks, a ~100-m3 capacity MC facility could process 2,000–4,000 metric tons of vegetable matter amended in ten hectares of arable land per year

Population genomics of sub-Saharan Drosophila melanogaster: African diversity and non-African admixture

(ABRIDGED) We report the genome sequencing of 139 wild-derived strains of D. melanogaster, representing 22 population samples from the sub-Saharan ancestral range of this species, along with one European population. Most genomes were sequenced above 25X depth from haploid embryos. Results indicated a pervasive influence of non-African admixture in many African populations, motivating the development and application of a novel admixture detection method. Admixture proportions varied among populations, with greater admixture in urban locations. Admixture levels also varied across the genome, with localized peaks and valleys suggestive of a non-neutral introgression process. Genomes from the same location differed starkly in ancestry, suggesting that isolation mechanisms may exist within African populations. After removing putatively admixed genomic segments, the greatest genetic diversity was observed in southern Africa (e.g. Zambia), while diversity in other populations was largely consistent with a geographic expansion from this potentially ancestral region. The European population showed different levels of diversity reduction on each chromosome arm, and some African populations displayed chromosome arm-specific diversity reductions. Inversions in the European sample were associated with strong elevations in diversity across chromosome arms. Genomic scans were conducted to identify loci that may represent targets of positive selection. A disproportionate number of candidate selective sweep regions were located near genes with varied roles in gene regulation. Outliers for Europe-Africa FST were found to be enriched in genomic regions of locally elevated cosmopolitan admixture, possibly reflecting a role for some of these loci in driving the introgression of non-African alleles into African populations

The Burden of Trachoma in South Sudan: Assessing the Health Losses from a Condition of Graded Severity

Trachoma is an infectious disease that is endemic to the Republic of South Sudan. In the absence of appropriate treatment recurrent re-infection in an individual will lead to progressively severe states of trachoma, eventually leading to the loss of visual acuity and finally blindness. Here we distinguish between three separate states of disease: trachoma with normal vision, trachoma with low vision and trachoma with blindness. The first of these states, trachoma with normal vision, is the least severe and the impact of this state on a population has not been well investigated. Trachoma, even before any loss of vision, comes with a great deal of pain and social consequences, and thus disability. In this study we employ data from South Sudan and estimate the burden caused by trachoma with normal vision for the first time. In doing so, we also reveal the extent of the gaps in our knowledge surrounding the natural history of trachoma and highlight areas of research that require urgent attention

Rapid motion adaptation reveals the temporal dynamics of spatiotemporal correlation between ON and OFF pathways

At the early stages of visual processing, information is processed by two major thalamic pathways encoding brightness increments (ON) and decrements (OFF). Accumulating evidence suggests that these pathways interact and merge as early as in primary visual cortex. Using regular and reverse-phi motion in a rapid adaptation paradigm, we investigated the temporal dynamics of within and across pathway mechanisms for motion processing. When the adaptation duration was short (188 ms), reverse-phi and regular motion led to similar adaptation effects, suggesting that the information from the two pathways are combined efficiently at early-stages of motion processing. However, as the adaption duration was increased to 752 ms, reverse-phi and regular motion showed distinct adaptation effects depending on the test pattern used, either engaging spatiotemporal correlation between the same or opposite contrast polarities. Overall, these findings indicate that spatiotemporal correlation within and across ON-OFF pathways for motion processing can be selectively adapted, and support those models that integrate within and across pathway mechanisms for motion processing

hSAGEing: An Improved SAGE-Based Software for Identification of Human Tissue-Specific or Common Tumor Markers and Suppressors

SAGE (serial analysis of gene expression) is a powerful method of analyzing gene expression for the entire transcriptome. There are currently many well-developed SAGE tools. However, the cross-comparison of different tissues is seldom addressed, thus limiting the identification of common- and tissue-specific tumor markers.To improve the SAGE mining methods, we propose a novel function for cross-tissue comparison of SAGE data by combining the mathematical set theory and logic with a unique “multi-pool method” that analyzes multiple pools of pair-wise case controls individually. When all the settings are in “inclusion”, the common SAGE tag sequences are mined. When one tissue type is in “inclusion” and the other types of tissues are not in “inclusion”, the selected tissue-specific SAGE tag sequences are generated. They are displayed in tags-per-million (TPM) and fold values, as well as visually displayed in four kinds of scales in a color gradient pattern. In the fold visualization display, the top scores of the SAGE tag sequences are provided, along with cluster plots. A user-defined matrix file is designed for cross-tissue comparison by selecting libraries from publically available databases or user-defined libraries