Consequences of ocean scale hypoxia constrained habitat for tropical pelagic fishes

Large areas of cold hypoxic water occur as distinct strata in the eastern tropical Pacific and Atlantic oceans as a result of high productivity initiated by intense nutrient upwelling. Recent studies show that this stratum restricts the depth distribution of tropical pelagic marlins, sailfish, and tunas in the eastern tropical Pacific by compressing the acceptable physical habitat into a narrow surface layer. This layer extends downward to a variable boundary defined by a shallow thermocline, often at 25 m, above a barrier of cold hypoxic water. The depth distributions of marlin and sailfish monitored with electronic tags and mean dissolved oxygen (DO) and temperature profiles show that this cold hypoxic environment constitutes a lower habitat boundary in the eastern tropical Pacific, but not in the western North Atlantic. where DO is not limiting. However. hypoxia-based habitat compression has not actually been demonstrated in the eastern tropical Atlantic Ocean, despite this region having similar oceanographic features to the eastern tropical Pacific. This paper explores the possibility that habitat compression of tropical pelagic fishes exists in the eastro tropical Atlantic and examines possible consequences of this phenomenon. We used Atlantic-wide catches of yellowfin tuna (Thunnus albacares) as an example why habitat compression off west Africa could eventually affect the total Atlantic stock

A preliminary analysis of spatiotemporal patterns in swordfish habitat distributions.

A species distribution model (SDM) for swordfish that was in the development stage has been finalized. The model used detailed biological and oceanographic data to define the spatial distribution of Swordfish. The SDM adequately predicted Swordfish habitat (and thus fish) distributions such that it was found suitable for investigations into the spatiotemporal distribution of habitat. Results of this preliminary investigation supports the current hypothesized stock boundaries between the north and south Atlantic stocks used for management. Both the north and south Atlantic may be experiencing an expansion of habitat. This could result in decreased density of swordfish into a larger area and/or change MSY production metrics. A more detailed examination of this possibility is recommended.Versión del edito

Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus

This is the final version of the article. It was first available from PLOS via http://dx.doi.org/10.1371/journal.pone.0144846All dLGN cell co-ordinates, V1 injection sites, dLGN boundary coordinates, experimental protocols and analysis scripts are available for download from figshare at https://figshare.com/s/36c6d937b1844eec80a1.The mouse dorsal lateral geniculate nucleus (dLGN) is an intermediary between retina and primary visual cortex (V1). Recent investigations are beginning to reveal regional complexity in mouse dLGN. Using local injections of retrograde tracers into V1 of adult and neonatal mice, we examined the developing organisation of geniculate projection columns: the population of dLGN-V1 projection neurons that converge in cortex. Serial sectioning of the dLGN enabled the distribution of labelled projection neurons to be reconstructed and collated within a common standardised space. This enabled us to determine: the organisation of cells within the dLGN-V1 projection columns; their internal organisation (topology); and their order relative to V1 (topography). Here, we report parameters of projection columns that are highly variable in young animals and refined in the adult, exhibiting profiles consistent with shell and core zones of the dLGN. Additionally, such profiles are disrupted in adult animals with reduced correlated spontaneous activity during development. Assessing the variability between groups with partial least squares regression suggests that 4?6 cryptic lamina may exist along the length of the projection column. Our findings further spotlight the diversity of the mouse dLGN?an increasingly important model system for understanding the pre-cortical organisation and processing of visual information. Furthermore, our approach of using standardised spaces and pooling information across many animals will enhance future functional studies of the dLGN.Funding was provided by a Wellcome Trust grant jointly awarded to IDT and SJE (083205, www.wellcome.ac.uk), and by MRC PhD Studentships awarded to MNL and ACH (http://www.mrc.ac.uk/)

On the mechanisms governing gas penetration into a tokamak plasma during a massive gas injection

A new 1D radial fluid code, IMAGINE, is used to simulate the penetration of gas into a tokamak plasma during a massive gas injection (MGI). The main result is that the gas is in general strongly braked as it reaches the plasma, due to mechanisms related to charge exchange and (to a smaller extent) recombination. As a result, only a fraction of the gas penetrates into the plasma. Also, a shock wave is created in the gas which propagates away from the plasma, braking and compressing the incoming gas. Simulation results are quantitatively consistent, at least in terms of orders of magnitude, with experimental data for a D 2 MGI into a JET Ohmic plasma. Simulations of MGI into the background plasma surrounding a runaway electron beam show that if the background electron density is too high, the gas may not penetrate, suggesting a possible explanation for the recent results of Reux et al in JET (2015 Nucl. Fusion 55 093013)

Velocity-space sensitivity of the time-of-flight neutron spectrometer at JET

The velocity-space sensitivities of fast-ion diagnostics are often described by so-called weight functions. Recently, we formulated weight functions showing the velocity-space sensitivity of the often dominant beam-target part of neutron energy spectra. These weight functions for neutron emission spectrometry (NES) are independent of the particular NES diagnostic. Here we apply these NES weight functions to the time-of-flight spectrometer TOFOR at JET. By taking the instrumental response function of TOFOR into account, we calculate time-of-flight NES weight functions that enable us to directly determine the velocity-space sensitivity of a given part of a measured time-of-flight spectrum from TOFOR

Relationship of edge localized mode burst times with divertor flux loop signal phase in JET

A phase relationship is identified between sequential edge localized modes (ELMs) occurrence times in a set of H-mode tokamak plasmas to the voltage measured in full flux azimuthal loops in the divertor region. We focus on plasmas in the Joint European Torus where a steady H-mode is sustained over several seconds, during which ELMs are observed in the Be II emission at the divertor. The ELMs analysed arise from intrinsic ELMing, in that there is no deliberate intent to control the ELMing process by external means. We use ELM timings derived from the Be II signal to perform direct time domain analysis of the full flux loop VLD2 and VLD3 signals, which provide a high cadence global measurement proportional to the voltage induced by changes in poloidal magnetic flux. Specifically, we examine how the time interval between pairs of successive ELMs is linked to the time-evolving phase of the full flux loop signals. Each ELM produces a clear early pulse in the full flux loop signals, whose peak time is used to condition our analysis. The arrival time of the following ELM, relative to this pulse, is found to fall into one of two categories: (i) prompt ELMs, which are directly paced by the initial response seen in the flux loop signals; and (ii) all other ELMs, which occur after the initial response of the full flux loop signals has decayed in amplitude. The times at which ELMs in category (ii) occur, relative to the first ELM of the pair, are clustered at times when the instantaneous phase of the full flux loop signal is close to its value at the time of the first ELM