Sobre la utilización de modelos estocásticos en neurofisiología

This is a way to calculate the neuron-associated transfer function in physiological processes, in which the entry is an random signal or series of random signals, particularity occurring in a Poisson distribution. Here we consider the case of a linear system only

Analysis by RNA-seq of transcriptomic changes elicited by heat shock in Leishmania major

Besides their medical relevance, Leishmania is an adequate model for studying post-transcriptional mechanisms of gene expression. In this microorganism, mRNA degradation/stabilization mechanisms together with translational control and post-translational modifications of proteins are the major drivers of gene expression. Leishmania parasites develop as promastigotes in sandflies and as amastigotes in mammalians, and during host transmission, the parasite experiences a sudden temperature increase. Here, changes in the transcriptome of Leishmania major promastigotes after a moderate heat shock were analysed by RNA-seq. Several of the up-regulated transcripts code for heat shock proteins, other for proteins previously reported to be amastigote-specific and many for hypothetical proteins. Many of the transcripts experiencing a decrease in their steady-state levels code for transporters, proteins involved in RNA metabolism or translational factors. In addition, putative long noncoding RNAs were identified among the differentially expressed transcripts. Finally, temperature-dependent changes in the selection of the spliced leader addition sites were inferred from the RNA-seq data, and particular cases were further validated by RT-PCR and Northern blotting. This study provides new insights into the post-transcriptional mechanisms by which Leishmania modulate gene expressionThis work was supported by grants (to B.A. and J.M.R.) from Ministerio de Economía, Industria y Competitividad, project number SAF2017-86965-R (co-funded with FEDER funds), and by the Network of Tropical Diseases Research RICET (RD16/0027/0008), co-funded with FEDER funds. The CBMSO receives institutional grants from the Fundación Ramón Areces and from the Fundación Banco de Santande

The thermal state of molecular clouds in the Galactic Center: evidence for non-photon-driven heating

We used the Atacama Pathfinder Experiment (APEX) 12 m telescope to observe the J_KaKc=3_03-2_02, 3_22-2_21, and 3_21-2_20 transitions of para-H_2CO at 218 GHz simultaneously to determine kinetic temperatures of the dense gas in the central molecular zone (CMZ) of our Galaxy. The map extends over approximately 40 arcmin x 8 arcmin (~100x20 pc^2) along the Galactic plane with a linear resolution of 1.2 pc. The strongest of the three lines, the H_2CO (3_03-2_02) transition, is found to be widespread, and its emission shows a spatial distribution similar to ammonia. The relative abundance of para-H_2CO is 0.5-1.2 10^{-9}, which is consistent with results from lower frequency H_2CO absorption lines. Derived gas kinetic temperatures for individual molecular clouds range from 50 K to values in excess of 100 K. While a systematic trend toward (decreasing) kinetic temperature versus (increasing) angular distance from the Galactic center (GC) is not found, the clouds with highest temperature (T_kin > 100 K) are all located near the nucleus. For the molecular gas outside the dense clouds, the average kinetic temperature is 65+/-10 K. The high temperatures of molecular clouds on large scales in the GC region may be driven by turbulent energy dissipation and/or cosmic-rays instead of photons. Such a non-photon-driven thermal state of the molecular gas provides an excellent template for the more distant vigorous starbursts found in ultraluminous infrared galaxies (ULIRGs).Comment: 23 pages, 11 figures, A&A in pres

Comparing Dynamic Hand Rehabilitation Gestures in Leap Motion Using Multi dimensional Dynamic Time Warping

We propose and evaluate the use of Multi-dimensional Dynamic Time Warping (MDTW) for comparing dynamic hand rehabilitation gestures that would be performed by a patient (query) relative to hand gestures prepared by a physiotherapist (reference). MDTW enables us to determine how similar or different a query dynamic hand gesture is to a reference one whilst filtering out unwanted sources of error resulting from positional, rotational or speed differences between the query and the reference actions. It produces a minimum-distance value of a warp path after aligning a query dynamic hand gesture with a reference one. A low minimum-distance value implies the two gestures being compared are similar and high minimum-distance value implies the two gestures vary to a greater extent. When we deliberately compare a specific hand gesture with itself, we obtain a minimum-distance value of 0° indicating the similarity is 100%. Furthermore, when we compare two closely similar hand gestures i.e. gesture 1 and gesture 4, a minimum-distance value of 35.9° is obtained. However, when we compare two quite different gestures i.e. gesture 2 and gesture 3, a minimum-distance value of 248.5° is obtained. Therefore, a physiotherapist can establish whether a patient performs hand rehabilitation gestures satisfactorily or an adjustment is required based on the minimum-distance values of the warp paths

Mineralogy and geochemical features of the recent sediments in the Odiel river (Huelva)

[Resumen] Los componentes minera16gicos fundamentales de los sedimentos actuales del río Odiel son: cuarzo, feldespatos y filosilicatos. La asociación illita-clorita-caolinita refleja el carácter esencialmente detrítico heredado de los minerales de la arcilla. Por otra parte, la asociación de minerales pesados muestra la influencia de diferentes áreas fuentes. El Odiel está extremadamente contaminado por metales pesados. La proximidad de importantes centros mineros de la Faja Pirítica tiene una gran incidencia sobre la concentración y distribución de Fe, Cu, Pb, Zn y Mn. Los sedimentos del estuario presentan algunas diferencias mineralógicas y geoquímicas importantes con respecto a los sedimentos típicamente fluviales.[Abstract] The mineralogical composition and the heavy metals content of recent sediments in the Odiel river have been investigated. Quanz, feldspar an phyllosilicates are the major constituents of the bulk sample. The illite-chlorite-kaolinite assemblage shows the inherited detrital character of the clay minerals. On the other hand, the heavy mineral associations indicate source areas. The river is very polluted by heavy metals. The proximity of important mining centres has a strong influence on the concentration and distribucion of Fe, Cu, Pb, Zn and Mn. The estuarine sediments studied have sorne mineralogical and geochemical features which are different from that of typical river sediments

Disentangling the excitation conditions of the dense gas in M17 SW

We probe the chemical and energetic conditions in dense gas created by radiative feedback through observations of multiple CO, HCN and HCO$^+$ transitions toward the dense core of M17 SW. We used the dual band receiver GREAT on board the SOFIA airborne telescope to obtain maps of the $J=16-15$, $J=12-11$, and $J=11-10$ transitions of $^{12}$CO. We compare these maps with corresponding APEX and IRAM 30m telescope data for low- and mid-$J$ CO, HCN and HCO$^+$ emission lines, including maps of the HCN $J=8-7$ and HCO$^+$ $J=9-8$ transitions. The excitation conditions of $^{12}$CO, HCO$^+$ and HCN are estimated with a two-phase non-LTE radiative transfer model of the line spectral energy distributions (LSEDs) at four selected positions. The energy balance at these positions is also studied. We obtained extensive LSEDs for the CO, HCN and HCO$^+$ molecules toward M17 SW. The LSED shape, particularly the high-$J$ tail of the CO lines observed with SOFIA/GREAT, is distinctive for the underlying excitation conditions. The critical magnetic field criterion implies that the cold cloudlets at two positions are partially controlled by processes that create and dissipate internal motions. Supersonic but sub-Alfv\'enic velocities in the cold component at most selected positions indicates that internal motions are likely MHD waves. Magnetic pressure dominates thermal pressure in both gas components at all selected positions, assuming random orientation of the magnetic field. The magnetic pressure of a constant magnetic field throughout all the gas phases can support the total internal pressure of the cold components, but it cannot support the internal pressure of the warm components. If the magnetic field scales as $B \propto n^{2/3}$, then the evolution of the cold cloudlets at two selected positions, and the warm cloudlets at all selected positions, will be determined by ambipolar diffusion.Comment: 26 pages, 13 figures, A&A accepte

The SIDER2 elements, interspersed repeated sequences that populate the Leishmania genomes, constitute subfamilies showing chromosomal proximity relationship

<p>Abstract</p> <p>Background</p> <p>Protozoan parasites of the genus <it>Leishmania </it>are causative agents of a diverse spectrum of human diseases collectively known as leishmaniasis. These eukaryotic pathogens that diverged early from the main eukaryotic lineage possess a number of unusual genomic, molecular and biochemical features. The completion of the genome projects for three <it>Leishmania </it>species has generated invaluable information enabling a direct analysis of genome structure and organization.</p> <p>Results</p> <p>By using DNA macroarrays, made with <it>Leishmania infantum </it>genomic clones and hybridized with total DNA from the parasite, we identified a clone containing a repeated sequence. An analysis of the recently completed genome sequence of <it>L. infantum</it>, using this repeated sequence as bait, led to the identification of a new class of repeated elements that are interspersed along the different <it>L. infantum </it>chromosomes. These elements turned out to be homologues of SIDER2 sequences, which were recently identified in the <it>Leishmania major </it>genome; thus, we adopted this nomenclature for the <it>Leishmania </it>elements described herein. Since SIDER2 elements are very heterogeneous in sequence, their precise identification is rather laborious. We have characterized 54 LiSIDER2 elements in chromosome 32 and 27 ones in chromosome 20. The mean size for these elements is 550 bp and their sequence is G+C rich (mean value of 66.5%). On the basis of sequence similarity, these elements can be grouped in subfamilies that show a remarkable relationship of proximity, i.e. SIDER2s of a given subfamily locate close in a chromosomal region without intercalating elements. For comparative purposes, we have identified the SIDER2 elements existing in <it>L. major </it>and <it>Leishmania braziliensis </it>chromosomes 32. While SIDER2 elements are highly conserved both in number and location between <it>L. infantum </it>and <it>L. major</it>, no such conservation exists when comparing with SIDER2s in <it>L. braziliensis </it>chromosome 32.</p> <p>Conclusion</p> <p>SIDER2 elements constitute a relevant piece in the <it>Leishmania </it>genome organization. Sequence characteristics, genomic distribution and evolutionarily conservation of SIDER2s are suggestive of relevant functions for these elements in <it>Leishmania</it>. Apart from a proved involvement in post-trancriptional mechanisms of gene regulation, SIDER2 elements could be involved in DNA amplification processes and, perhaps, in chromosome segregation as centromeric sequences.</p

Root cortex development is fine-tuned by the interplay of MIGs, SCL3 and DELLAs during arbuscular mycorrhizal symbiosis

Root development is a crucial process that determines the ability of plants to acquire nutrients, adapt to the substrate and withstand changing environmental conditions. Root plasticity is controlled by a plethora of transcriptional regulators that allow, in contrast to tissue development in animals, post-embryonic changes that give rise to new tissue and specialized cells. One of these changes is the accommodation in the cortex of hyperbranched hyphae of symbiotic arbuscular mycorrhizal (AM) fungi, called arbuscules. Arbuscule-containing cells undergo massive reprogramming to coordinate developmental changes with transport processes. Here we describe a novel negative regulator of arbuscule development, MIG3. MIG3 induces and interacts with SCL3, both of which modulate the activity of the central regulator DELLA, restraining cortical cell growth. As in a tug-of-war, MIG3-SCL3 antagonizes the function of the complex MIG1-DELLA, which promotes the cell expansion required for arbuscule development, adjusting cell size during the dynamic processes of the arbuscule life cycle. Our results in the legume plant Medicago truncatula advance the knowledge of root development in dicot plants, showing the existence of additional regulatory elements not present in Arabidopsis that fine-tune the activity of conserved central modules