Long-term variations of the mesospheric wind field at mid-latitudes

Continuous MF radar observations at the station Juliusruh (54.6° N; 13.4° E) have been analysed for the time interval between 1990 and 2005, to obtain information about solar activity-induced variations, as well as long-term trends in the mesospheric wind field. Using monthly median values of the zonal and the meridional prevailing wind components, as well as of the amplitude of the semidiurnal tide, regression analyses have been carried out with a dependence on solar activity and time. The solar activity causes a significant amplification of the zonal winds during summer (increasing easterly winds) and winter (increasing westerly winds). The meridional wind component is positively correlated with the solar activity during summer but during winter the correlation is very small and non significant. Also, the solar influence upon the amplitude of the semidiurnal tidal component is relatively small (in dependence on height partly positive and partly negative) and mostly non-significant. The derived trends in the zonal wind component during summer are below an altitude of about 83 km negative and above this height positive. During the winter months the trends are nearly opposite compared with the trends in summer (transition height near 86 km). The trends in the meridional wind components are below about 85 km positive in summer (significant) and near zero (nonsignificant) in winter; above this height during both seasons negative trends have been detected. The trends in the semidiurnal tidal amplitude are at all heights positive, but only partly significant. The detected trends and solar cycle dependencies are compared with other experimental results and model calculations. There is no full agreement between the different results, probably caused by different measuring techniques and evaluation methods used. Also, different heights and observation periods investigated may contribute to the detected differences

The Development of New Concepts for Assessing Reproductive Toxicity Applicable to Large Scale Toxicological Programmes

Large scale toxicological testing programmes which are currently ongoing such as the new European chemical legislation REACH require the development of new integrated testing strategies rather than applying traditional testing schemes to thousands of chemicals. The current practice of requiring in vivo testing for every possible adverse effect endanger the success of these programmes due (i) to limited testing facilities and sufficient capacity of scientific/technical knowledge for reproductive toxicity; (ii) an unacceptable number of laboratory animals involved (iii) an intolerable number of chemicals classified as false positive. A key aspect of the implementation of new testing strategies is the determination of prevalence of reproductive toxicity in the universe of industrial chemicals. Prevalences are relevant in order to be aware on the expected rate of false classification during the toxicological testing and to implement appropriate measures for their avoidance. Furthermore, a detailed understanding on the subendpoints affected by reproductive toxicants and the underlying mechanisms will lead to more science based testing strategies integrating alternative methods without compromising the protection of consumers

Directional Soliton and Breather Beams

Solitons and breathers are nonlinear modes that exist in a wide range of physical systems. They are fundamental solutions of a number of nonlinear wave evolution equations, including the uni-directional nonlinear Schr\"odinger equation (NLSE). We report the observation of slanted solitons and breathers propagating at an angle with respect to the direction of propagation of the wave field. As the coherence is diagonal, the scale in the crest direction becomes finite, consequently, a beam dynamics forms. Spatio-temporal measurements of the water surface elevation are obtained by stereo-reconstructing the positions of the floating markers placed on a regular lattice and recorded with two synchronized high-speed cameras. Experimental results, based on the predictions obtained from the (2D+1) hyperbolic NLSE equation, are in excellent agreement with the theory. Our study proves the existence of such unique and coherent wave packets and has serious implications for practical applications in optical sciences and physical oceanography. Moreover, unstable wave fields in this geometry may explain the formation of directional large amplitude rogue waves with a finite crest length within a wide range of nonlinear dispersive media, such as Bose-Einstein condensates, plasma, hydrodynamics and optics

Compatible Solute Synthesis and Import by the Moderate Halophile Spiribacter salinus: Physiology and Genomics

Members of the genus Spiribacter are found worldwide and are abundant in ecosystems possessing intermediate salinities between seawater and saturated salt concentrations. Spiribacter salinus M19-40 is the type species of this genus and its first cultivated representative. In the habitats of S. salinus M19-40, high salinity is a key determinant for growth and we therefore focused on the cellular adjustment strategy to this persistent environmental challenge. We coupled these experimental studies to the in silico mining of the genome sequence of this moderate halophile with respect to systems allowing this bacterium to control its potassium and sodium pools, and its ability to import and synthesize compatible solutes. S. salinus M19-40 produces enhanced levels of the compatible solute ectoine, both under optimal and growth-challenging salt concentrations, but the genes encoding the corresponding biosynthetic enzymes are not organized in a canonical ectABC operon. Instead, they are scrambled (ectAC; ectB) and are physically separated from each other on the S. salinus M19-40 genome. Genomes of many phylogenetically related bacteria also exhibit a non-canonical organization of the ect genes. S. salinus M19-40 also synthesizes trehalose, but this compatible solute seems to make only a minor contribution to the cytoplasmic solute pool under osmotic stress conditions. However, its cellular levels increase substantially in stationary phase cells grown under optimal salt concentrations. In silico genome mining revealed that S. salinus M19-40 possesses different types of uptake systems for compatible solutes. Among the set of compatible solutes tested in an osmostress protection growth assay, glycine betaine and arsenobetaine were the most effective. Transport studies with radiolabeled glycine betaine showed that S. salinus M19-40 increases the pool size of this osmolyte in a fashion that is sensitively tied to the prevalent salinity of the growth medium. It was amassed in salt-stressed cells in unmodified form and suppressed the synthesis of ectoine. In conclusion, the data presented here allow us to derive a genome-scale picture of the cellular adjustment strategy of a species that represents an environmentally abundant group of ecophysiologically important halophilic microorganisms.España Ministerio de Economía y Competitividad CGL2013-46941-P and CGL2017-83385-

Stress-induced activation of the proline biosynthetic pathway in Bacillus subtilis:A population-wide and single-cell study of the osmotically controlled proHJ promoter

Bacillus subtilis, in its natural habitat, is regularly exposed to rapid changes in the osmolarity of its surrounding. As its primary survival strategy, it accumulates large amounts of the compatible solute proline by activating the de novo proline biosynthesis pathway and exploiting the glutamate pools. This osmotically-induced biosynthesis requires activation of a SigA-type promoter that drives the expression of the proHJ operon. Population-wide studies have shown that the activity of the proHJ promoter correlates with the increased osmotic pressure of the environment. Therefore, the activation of the proHJ transcription should be an adequate measure of the adaptation to osmotic stress through proline synthesis in the absence of other osmoprotectants. In this study, we investigate the kinetics of the proHJ promoter activation and the early adaptation to mild osmotic upshift at the single-cell level. Under these conditions, we observed a switching point and heterogeneous proline biosynthesis gene expression, where the subpopulation of cells showing active proHJ transcription is able to continuously divide, and those unresponsive to osmotic stress remain dormant. Additionally, we demonstrate that bactericidal antibiotics significantly upregulate proHJ transcription in the absence of externally imposed osmotic pressure, suggesting that the osmotically-controlled proline biosynthesis pathway is also involved in the antibiotic-mediated stress response

Identification of Differentially Expressed Genes during Bacillus subtilis Spore Outgrowth in High-Salinity Environments Using RNA Sequencing

In its natural habitat, the soil bacterium Bacillus subtilis often has to cope with fluctuating osmolality and nutrient availability. Upon nutrient depletion it can form dormant spores, which can revive to form vegetative cells when nutrients become available again. While the effects of salt stress on spore germination have been analyzed previously, detailed knowledge on the salt stress response during the subsequent outgrowth phase is lacking. In this study, we investigated the changes in gene expression during B. subtilis outgrowth in the presence of 1.2 M NaCl using RNA sequencing. In total, 402 different genes were upregulated and 632 genes were downregulated during 90 min of outgrowth in the presence of salt. The salt stress response of outgrowing spores largely resembled the osmospecific response of vegetative cells exposed to sustained high salinity and included strong upregulation of genes involved in osmoprotectant uptake and compatible solute synthesis. The σB-dependent general stress response typically triggered by salt shocks was not induced, whereas the σW regulon appears to play an important role for osmoadaptation of outgrowing spores. Furthermore, high salinity induced many changes in the membrane protein and transporter transcriptome. Overall, salt stress seemed to slow down the complex molecular reorganization processes (“ripening”) of outgrowing spores by exerting detrimental effects on vegetative functions such as amino acid metabolism

Conjugated oligomers with alternating heterocycles from a single monomer:synthesis and demonstration of electroluminescence

International audienceConjugated oligomers based on two different heterocycles are typically prepared by step growth polycondensation cross-coupling methods from two monomers X-Cycle1-X and M-Cycle2-M with no control of the regioselectivity. In this work, we used a new synthetic strategy that involves an extremely chemoselective reaction of a dielectrophilic compound, X1 Cycle1 X2, with a dinucleophilic component, M1-Cycle2-M2, under Stille conditions. The resulting monomers, X1 Cycle1 Cycle2-M2 are di-heterocyclic push pull monomers that still contain a nucleophilic site (boronic acid) and electrophilic site (bromide) and are set up for a controlled polymerization under Suzuki conditions. In this way, two semiconducting oligomers, based on thiophene / benzene and thiophene / pyridine motifs were synthesized. Both oligomers were characterized in terms of their, thermal, electrochemical, absorption, emission and electroluminescence properties

The ␥-Aminobutyrate Permease GabP Serves as the Third Proline Transporter of Bacillus subtilis

b PutP and OpuE serve as proline transporters when this imino acid is used by Bacillus subtilis as a nutrient or as an osmostress protectant, respectively. The simultaneous inactivation of the PutP and OpuE systems still allows the utilization of proline as a nutrient. This growth phenotype pointed to the presence of a third proline transport system in B. subtilis. We took advantage of the sensitivity of a putP opuE double mutant to the toxic proline analog 3,4-dehydro-DL-proline (DHP) to identify this additional proline uptake system. DHP-resistant mutants were selected and found to be defective in the use of proline as a nutrient. Whole-genome resequencing of one of these strains provided the lead that the inactivation of the ␥-aminobutyrate (GABA) transporter GabP was responsible for these phenotypes. DNA sequencing of the gabP gene in 14 additionally analyzed DHPresistant strains confirmed this finding. Consistently, each of the DHP-resistant mutants was defective not only in the use of proline as a nutrient but also in the use of GABA as a nitrogen source. The same phenotype resulted from the targeted deletion of the gabP gene in a putP opuE mutant strain. Hence, the GabP carrier not only serves as an uptake system for GABA but also functions as the third proline transporter of B. subtilis. Uptake studies with radiolabeled GABA and proline confirmed this conclusion and provided information on the kinetic parameters of the GabP carrier for both of these substrates