Genomic Exploration of the Hemiascomycetous Yeasts: 7. Saccharomyces servazzii

AbstractThe genome of Saccharomyces servazzii was analyzed with 2570 random sequence tags totalling 2.3 Mb. BLASTX comparisons revealed a minimum of 1420 putative open reading frames with significant homology to Saccharomyces cerevisiae (58% aa identity on average), two with Schizosaccharomyces pombe and one with a human protein, confirming that S. servazzii is closely related to S. cerevisiae. About 25% of the S. servazzii genes were identified, assuming that the gene complement is identical in both yeasts. S. servazzii carries very few transposable elements related to Ty elements in S. cerevisiae. Most of the mitochondrial genes were identified in eight contigs altogether spanning 25 kb for a predicted size of 29 kb. A significant match with the Kluyveromyces lactis linear DNA plasmid pGKL-1 encoded RF4 killer protein suggests that a related plasmid exists in S. servazzii. The sequences have been deposited with EMBL under the accession numbers AL402279–AL404848

Conditional Stat1 Ablation Reveals the Importance of Interferon Signaling for Immunity to Listeria monocytogenes Infection

Signal transducer and activator of transcription 1 (Stat1) is a key player in responses to interferons (IFN). Mutations of Stat1 cause severe immune deficiencies in humans and mice. Here we investigate the importance of Stat1 signaling for the innate and secondary immune response to the intracellular bacterial pathogen Listeria monocytogenes (Lm). Cell type-restricted ablation of the Stat1 gene in naïve animals revealed unique roles in three cell types: macrophage Stat1 signaling protected against lethal Lm infection, whereas Stat1 ablation in dendritic cells (DC) did not affect survival. T lymphocyte Stat1 reduced survival. Type I IFN (IFN-I) signaling in T lymphocytes reportedly weakens innate resistance to Lm. Surprisingly, the effect of Stat1 signaling was much more pronounced, indicating a contribution of Stat1 to pathways other than the IFN-I pathway. In stark contrast, Stat1 activity in both DC and T cells contributed positively to secondary immune responses against Lm in immunized animals, while macrophage Stat1 was dispensable. Our findings provide the first genetic evidence that Stat1 signaling in different cell types produces antagonistic effects on innate protection against Lm that are obscured in mice with complete Stat1 deficiency. They further demonstrate a drastic change in the cell type-dependent Stat1 requirement for memory responses to Lm infection

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

Fluxes and sources of nutrient and trace metal atmospheric deposition in the northwestern Mediterranean

International audienceTotal atmospheric deposition was collected on a weekly basis over 3.5 years (March 2008-October 2011) at a remote coastal site on the west coast of Corsica. Deposition time series of macro-and micronutrients (N, P, Si, Fe) and trace metals (As, Cr, Cu, Mn, Ni, V, Zn) are investigated in terms of variability and source apportionment (from fluxes of proxies for aerosol sources (Al, Ti, Ca, Na, Mg, S, Sr, K, Pb)). The highest fluxes are recorded for Si, P, and Fe for nutrients and Zn and Mn for trace metals. For the majority of elements, data show some weeks with high episodic fluxes, except for N, Cr, and V, which present the lowest variability. A total of 12 intense mineral dust deposition events are identified during the sampling period. The contribution of these events to the fluxes of Fe and Si represents 52 % and 57 % of their total fluxes, respectively, confirming the important role of these sporadic dust events in the inputs of these elements in the Mediterranean. For N and P, the contribution of these intense dust deposition events is lower and reaches 10 % and 15 %, respectively. Out of these most intense events, positive matrix factorization (PMF) was applied to our total de-position database in order to identify the main sources of nutrients and trace metals deposited. Results show that P de-position is mainly associated with anthropogenic biomass burning inputs. For N deposition, inputs associated with marine sources (maybe associated with the reaction of anthro-pogenic N on NaCl particles) and anthropogenic sources are quasi-similar. A good correlation is obtained between N and S fluxes, supporting a common origin associated with inorganic secondary aerosol, i.e., ammonium sulfate. For trace metals, their origin is very variable: with a large contribution of natural dust sources for Ni or Mn and conversely of anthropogenic sources for V and Zn

Variability of mineral dust deposition in the western Mediterranean basin and south-east of France

International audiencePrevious studies have provided some insight into the Saharan dust deposition at a few specific locations from observations over long time periods or intensive field campaigns. However, no assessment of the dust deposition temporal variability in connection with its regional spatial distribution has been achieved so far from network observations over more than 1 year. To investigate dust deposition dynamics at the regional scale, five automatic deposition collectors named CARAGA (Collecteur Automatique de Retombées Atmosphériques insolubles à Grande Autonomie in French) have been deployed in the western Mediterranean region during 1 to 3 years depending on the station. The sites include, from south to north, Lampedusa, Majorca, Corsica, Frioul and Le Casset (southern French Alps). Deposition measurements are performed on a common weekly period at the five sites. The mean dust deposition fluxes are higher close to the northern African coasts and decrease following a south-north gradient, with values from 7.4 g m −2 year −1 in Lampe-dusa (35 • 31 N, 12 • 37 E) to 1 g m −2 year −1 in Le Casset (44 • 59 N, 6 • 28 E). The maximum deposition flux recorded is of 3.2 g m −2 wk −1 in Majorca with only two other events showing more than 1 g m −2 wk −1 in Lampedusa, and a maximum of 0.5 g m −2 wk −1 in Corsica. The maximum value of 2.1 g m −2 year −1 observed in Corsica in 2013 is much lower than existing records in the area over the 3 previous decades (11-14 g m −2 year −1). From the 537 available samples, 98 major Saharan dust deposition events have been identified in the records between 2011 and 2013. Complementary observations provided by both satellite and air mass trajectories are used to identify the dust provenance areas and the transport pathways from the Sahara to the stations for the studied period. Despite the large size of African dust plumes detected Published by Copernicus Publications on behalf of the European Geosciences Union. 8750 J. Vincent et al.: Variability of mineral dust deposition by satellites, more than 80 % of the major dust deposition events are recorded at only one station, suggesting that the dust provenance, transport and deposition processes (i.e. wet vs. dry) of dust are different and specific for the different de-position sites in the Mediterranean studied area. The results tend to indicate that wet deposition is the main form of de-position for mineral dust in the western Mediterranean basin, but the contribution of dry deposition (in the sense that no precipitation was detected at the surface) is far from being negligible, and contributes 10 to 46 % to the major dust de-position events, depending on the sampling site