Probabilistic and predictive performance-based approach for assessing reinforced concrete structures lifetime: The applet project

International audienceConcrete deterioration results in different damage extents, from cracking to concrete spalling, from losses of reinforcement cross-sections to bond losses. A relevant prediction of this performance is the basis for a successful management of the concrete structures. Conversely, the large amount of uncertainties related to parameters and models require a specific analysis in order to provide relevant results. The APPLET project intends to develop a probabilistic and predictive performance-based approach by quantifying the various sources of variability (material and structure), studying the interaction between environmental aggressive agents and the concrete material, ensuring a transfer of the physical-chemical models at the material scale towards models at the structure level, including and understanding in a better manner the corrosion process, integrating interface models between reinforcement and concrete, proposing relevant numerical models, integrating know-how from monitoring or inspection. To provide answers, a consortium of 19 partners has been established and has promoted a research project funded by the French Research Science Agency (ANR). Started in May 2007, the project has ended in November 2010. This paper will resume the most significant advances targeted by this research project

Expression and trans-specific polymorphism of self-incompatibility RNases in Coffea (Rubiaceae)

Self-incompatibility (SI) is widespread in the angiosperms, but identifying the biochemical components of SI mechanisms has proven to be difficult in most lineages. Coffea (coffee; Rubiaceae) is a genus of old-world tropical understory trees in which the vast majority of diploid species utilize a mechanism of gametophytic self-incompatibility (GSI). The S-RNase GSI system was one of the first SI mechanisms to be biochemically characterized, and likely represents the ancestral Eudicot condition as evidenced by its functional characterization in both asterid (Solanaceae, Plantaginaceae) and rosid (Rosaceae) lineages. The S-RNase GSI mechanism employs the activity of class III RNase T2 proteins to terminate the growth of "self" pollen tubes. Here, we investigate the mechanism of Coffea GSI and specifically examine the potential for homology to S-RNase GSI by sequencing class III RNase T2 genes in populations of 14 African and Madagascan Coffea species and the closely related self-compatible species Psilanthus ebracteolatus. Phylogenetic analyses of these sequences aligned to a diverse sample of plant RNase T2 genes show that the Coffea genome contains at least three class III RNase T2 genes. Patterns of tissue-specific gene expression identify one of these RNase T2 genes as the putative Coffea S-RNase gene. We show that populations of SI Coffea are remarkably polymorphic for putative S-RNase alleles, and exhibit a persistent pattern of trans-specific polymorphism characteristic of all S-RNase genes previously isolated from GSI Eudicot lineages. We thus conclude that Coffea GSI is most likely homologous to the classic Eudicot S-RNase system, which was retained since the divergence of the Rubiaceae lineage from an ancient SI Eudicot ancestor, nearly 90 million years ago.United States National Science Foundation [0849186]; Society of Systematic Biologists; American Society of Plant Taxonomists; Duke University Graduate Schoolinfo:eu-repo/semantics/publishedVersio

Rinistachya hilleri gen. et sp. nov.(Sphenophyllales), from the upper Devonian of South Africa

A rich and diverse plant assemblage has been excavated from latest Devonian (Famennian) black shales of the Witpoort Formation (Witteberg Group) at Waterloo Farm, close to the city of Grahamstown (South Africa). Several specimens of a new sphenopsid have been collected. The description of this as a new taxon, here named Rinistachya hilleri, gen. et sp. nov., provides an important addition to the scarce early record of the group. Rinistachya hilleri presents a novel architecture that include apparently plesiomorphic characters, reminiscent of the organisation of the Iridopteridales (including the production of two types of laterals at one node, the location of fertile parts in loose whorls on lateral branches and an organisation of the fertile parts in which they branch several times before bearing distally elongate sporangia). Other characters unambiguously nest Rinistachya within the Sphenopsida (including presence of planate and slightly webbed ultimate appendages and lateral strobili made of successive whorls of fertile leaves with fertile parts located at their axil). This provides strong support for a close relationship between Sphenopsida and Iridopteridales. Rinistachya furthermore represents the first record of a Devonian sphenopsid from Gondwana and extends the known distribution of the Sphenopsida from the tropics to very high palaeolatitudes. It is a new sphenopsid with a peculiar organisation. The new taxon allows better characterization of the initial evolutionary radiation at the base of the group

A multi-disciplinary perspective on emergent and future innovations in peer review [version 2; referees: 2 approved]

Peer review of research articles is a core part of our scholarly communication system. In spite of its importance, the status and purpose of peer review is often contested. What is its role in our modern digital research and communications infrastructure? Does it perform to the high standards with which it is generally regarded? Studies of peer review have shown that it is prone to bias and abuse in numerous dimensions, frequently unreliable, and can fail to detect even fraudulent research. With the advent of web technologies, we are now witnessing a phase of innovation and experimentation in our approaches to peer review. These developments prompted us to examine emerging models of peer review from a range of disciplines and venues, and to ask how they might address some of the issues with our current systems of peer review. We examine the functionality of a range of social Web platforms, and compare these with the traits underlying a viable peer review system: quality control, quantified performance metrics as engagement incentives, and certification and reputation. Ideally, any new systems will demonstrate that they out-perform and reduce the biases of existing models as much as possible. We conclude that there is considerable scope for new peer review initiatives to be developed, each with their own potential issues and advantages. We also propose a novel hybrid platform model that could, at least partially, resolve many of the socio-technical issues associated with peer review, and potentially disrupt the entire scholarly communication system. Success for any such development relies on reaching a critical threshold of research community engagement with both the process and the platform, and therefore cannot be achieved without a significant change of incentives in research environments

Desafíos de la caficultura en Centroamérica

Contiene: 1 Trayectoria y viabilidad de las caficulturas centroamericanas (Mario Samper). 2 Aspectos de la sostenibilidad de los sistemas de cultivo de café en América Central (Carlos E. Fernández y Reinhold G. Muschler). 3 Los suelos cafetaleros en América Central y su fertilización (Elemer Bornemisza, Jean Collinet y Alvaro Segura). 4 Hacia un manejo sostenible de la materia orgánica y de la fertilidad biológica de los suelos cafetaleros (Philippe Vaast y Didier Snoeck). 5 El beneficiado ecológico del café (Rolando Vásquez). 6 La roya anaranjada del cafeto: mito y realidad (Jacques Avelino, Raoul Muller, Albertus Eskes, Rodney Santacreo y Francisco Holguín). 7 El ojo de gallo del cafeto (Mycena citricolor) (Amy Wang y Jacques Avelino). 8 La Anthracnosis de los frutos: un grave peligro para la caficultura centroamericana (Raoul A. Müller, Dominique Berry y Daniel Bieysse). 9 La broca de los frutos del cafeto: +la lucha biológica como solución? (Bernard Dufour, Juan Francisco Barrera y Bernard Decazy). 10 Los Nematodos Parásitos del cafeto (Luc Villain, Francisco Anzueto, Adám Hernández y Jean Louis Sarah). 11 Los recursos genéticos: las bases de una solución genética a los problemas de la caficultura latinoamericana (Franéois Anthony, Carlos Astorga y Julien Berthaud). 12 El mejoramiento genético en América Central (Beno¯t Bertrand, Germán Aguilar, Rodney Santacreo y Francisco Anzueto. 13 Aportes de la biotecnología al mejoramiento genético del café: el ejemplo de la multiplicación por embriogénesis somática de híbridos F1 en América Central (Hervé Etienne, Dominique Barry-Etienne, Nelly Vásquez y Marc Berthouly).2 fig. Cuenta con un glosario.Este documento es una recopilación de información realizada por varias autores y autoras. El libro intenta contribuir al debate y desafíos de la investigación cafetalera, presentando los grandes problemas ecológicos, Agronómicos y biológicos que acechan a la caficultura centroamericana, o que la afectarán probablemente en un futuro cercano. El libro comienza por una resena hist6rica que permite tanto entender la diversidad de situaciones de producci6n coma interpretar los debates actuales en un contexto mas amplio de una historia bisecular. Luego, se estudian los principales avances y limitaciones de los sistemas de cultivo con una atención particular del manejo deI suelo con el afán de proponer soluciones, o de identificar campos prioritarios de investigación. También se repasan los grandes desafios deI beneficiado dei café que son principalmente ecológicos. Un gran espacio es dedicado al estudio de las principales enfermedades y plagas deI café, cuyo desarrollo y agravamiento repercute en costos de control muy elevados. La lucha biológica o integrada puede (o podrá) ofrecer soluciones alentadoras. En fin, se presentan las posibilidades de creaci6n de nuevas variedades de café a partir de los recursos genéticos introducidos de Africa, con las esperanzas que despiertan las nuevas biotecnologias

Effect of double thermal and electrochemical oxidation on titanium alloys for medical applications

The research focuses on the development and characterization of innovative thin hybrid oxide coatings obtained in subsequent processes of thermal (TO) and electrochemical (EO) oxidation. Four different surface modifications were investigated and the microstructure was determined, the mechanical, chemical and biological properties of the Ti-13Nb-13Zr alloy were assessed using scanning electron microscopy, X-ray dispersion analysis, glow discharge emission spectroscopy, Raman spectroscopy, nanoindentation and corrosion resistance measurements. The composite layers were evaluated for antimicrobial activity, cytotoxicity bioassays and wettability tests were performed. The conducted studies of two-stage oxidation (TO + EO) have shown that it is possible to obtain layers with a different structure - crystalline and nanotubular. The formation of a nanotube layer on the surface of the crystalline layer is dependent on the thickness of the crystalline layer. The produced double titanium oxide coatings show high surface roughness, high corrosion resistance, are hydrophilic, slightly antibacterial, and not cytotoxic, which has a huge impact on the process of connecting the tissue with the implant

Efficacy and Safety of Three Antiretroviral Regimens for Initial Treatment of HIV-1: A Randomized Clinical Trial in Diverse Multinational Settings

Background:Antiretroviral regimens with simplified dosing and better safety are needed to maximize the efficiency of antiretroviral delivery in resource-limited settings. We investigated the efficacy and safety of antiretroviral regimens with once-daily compared to twice-daily dosing in diverse areas of the world.Methods and Findings:1,571 HIV-1-infected persons (47% women) from nine countries in four continents were assigned with equal probability to open-label antiretroviral therapy with efavirenz plus lamivudine-zidovudine (EFV+3TC-ZDV), atazanavir plus didanosine-EC plus emtricitabine (ATV+DDI+FTC), or efavirenz plus emtricitabine-tenofovir-disoproxil fumarate (DF) (EFV+FTC-TDF). ATV+DDI+FTC and EFV+FTC-TDF were hypothesized to be non-inferior to EFV+3TC-ZDV if the upper one-sided 95% confidence bound for the hazard ratio (HR) was ≤1.35 when 30% of participants had treatment failure.An independent monitoring board recommended stopping study follow-up prior to accumulation of 472 treatment failures. Comparing EFV+FTC-TDF to EFV+3TC-ZDV, during a median 184 wk of follow-up there were 95 treatment failures (18%) among 526 participants versus 98 failures among 519 participants (19%; HR 0.95, 95% CI 0.72-1.27; p = 0.74). Safety endpoints occurred in 243 (46%) participants assigned to EFV+FTC-TDF versus 313 (60%) assigned to EFV+3TC-ZDV (HR 0.64, CI 0.54-0.76; p<0.001) and there was a significant interaction between sex and regimen safety (HR 0.50, CI 0.39-0.64 for women; HR 0.79, CI 0.62-1.00 for men; p = 0.01). Comparing ATV+DDI+FTC to EFV+3TC-ZDV, during a median follow-up of 81 wk there were 108 failures (21%) among 526 participants assigned to ATV+DDI+FTC and 76 (15%) among 519 participants assigned to EFV+3TC-ZDV (HR 1.51, CI 1.12-2.04; p = 0.007).Conclusion: EFV+FTC-TDF had similar high efficacy compared to EFV+3TC-ZDV in this trial population, recruited in diverse multinational settings. Superior safety, especially in HIV-1-infected women, and once-daily dosing of EFV+FTC-TDF are advantageous for use of this regimen for initial treatment of HIV-1 infection in resource-limited countries. ATV+DDI+FTC had inferior efficacy and is not recommended as an initial antiretroviral regimen.Trial Registration:http://www.ClinicalTrials.gov NCT00084136

A multi-disciplinary perspective on emergent and future innovations in peer review

Peer review of research articles is a core part of our scholarly communication system. In spite of its importance, the status and purpose of peer review is often contested. What is its role in our modern digital research and communications infrastructure? Does it perform to the high standards with which it is generally regarded? Studies of peer review have shown that it is prone to bias and abuse in numerous dimensions, frequently unreliable, and can fail to detect even fraudulent research. With the advent of web technologies, we are now witnessing a phase of innovation and experimentation in our approaches to peer review. These developments prompted us to examine emerging models of peer review from a range of disciplines and venues, and to ask how they might address some of the issues with our current systems of peer review. We examine the functionality of a range of social Web platforms, and compare these with the traits underlying a viable peer review system: quality control, quantified performance metrics as engagement incentives, and certification and reputation. Ideally, any new systems will demonstrate that they out-perform and reduce the biases of existing models as much as possible. We conclude that there is considerable scope for new peer review initiatives to be developed, each with their own potential issues and advantages. We also propose a novel hybrid platform model that could, at least partially, resolve many of the socio-technical issues associated with peer review, and potentially disrupt the entire scholarly communication system. Success for any such development relies on reaching a critical threshold of research community engagement with both the process and the platform, and therefore cannot be achieved without a significant change of incentives in research environments