Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.

Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This circuit consists of three genes connected as a combination of a toggle switch and a repressilator. Using dynamical systems theory, we show that the AC-DC circuit exhibits both oscillations and bistability within the same region of parameter space; this generates emergent behaviors not available to either the toggle switch or the repressilator alone. The AC-DC circuit can switch on oscillations via two distinct mechanisms, one of which induces coherence into ensembles of oscillators. In addition, we show that in the presence of noise, the AC-DC circuit can behave as an excitable system capable of spatial signal propagation or coherence resonance. Together, these results demonstrate how combinations of simple motifs can exhibit multiple complex behaviors

Geometric Suppression of Single-Particle Energy Spacings in Quantum Antidots

Quantum Antidot (AD) structures have remarkable properties in the integer quantum Hall regime, exhibiting Coulomb-blockade charging and the Kondo effect despite their open geometry. In some regimes a simple single-particle (SP) model suffices to describe experimental observations while in others interaction effects are clearly important, although exactly how and why interactions emerge is unclear. We present a combination of experimental data and the results of new calculations concerning SP orbital states which show how the observed suppression of the energy spacing between states can be explained through a full consideration of the AD potential, without requiring any effects due to electron interactions such as the formation of compressible regions composed of multiple states, which may occur at higher magnetic fields. A full understanding of the regimes in which these effects occur is important for the design of devices to coherently manipulate electrons in edge states using AD resonances.Comment: 4 pages, 2 figure

Two charged strangeonium-like structures observable in the Y(2175)→ϕ(1020)π+π−Y(2175) \to \phi(1020)\pi^{+} \pi^{-} process

Via the Initial Single Pion Emission (ISPE) mechanism, we study the $\phi(1020)\pi^{+}$ invariant mass spectrum distribution of $Y(2175) \to \phi(1020)\pi^{+} \pi^{-}$. Our calculation indicates there exist a sharp peak structure ($Z_{s1}^+$) close to the $K\bar{K}^\ast$ threshold and a broad structure ($Z_{s2}^+$) near the $K^\ast\bar{K}^\ast$ threshold. In addition, we also investigate the $\phi(1680) \to \phi(1020)\pi^{+} \pi^{-}$ process due to the ISPE mechanism, where a sharp peak around the $K\bar{K}^\ast$ threshold appears in the $\phi(1020)\pi^{+}$ invariant mass spectrum distribution. We suggest to carry out the search for these charged strangeonium-like structures in future experiment, especially Belle II, Super-B and BESIII.Comment: 7 pages, 5 figures. Accepted by Eur. Phys. J.

Evidence for the fourth P11 resonance predicted by the constituent quark model

It is pointed out that the third of five low-lying P11 states predicted by a constituent quark model can be identified with the third of four states in a solution from a three-channel analysis by the Zagreb group. This is one of the so-called ``missing'' resonances, predicted at 1880 MeV. The fit of the Zagreb group to the pi N -> eta N data is the crucial element in finding this fourth resonance in the P11 partial wave.Comment: 8 pages, revtex; expanded acknowledgement

Effects of electrical stimulation of dorsal raphe nucleus on neuronal response properties of barrel cortex layer IV neurons following long-term sensory deprivation

Abstract: Objective To evaluate the effect of electrical stimulation of dorsal raphe nucleus (DRN) on response properties of layer IV barrel cortex neurons following long-term sensory deprivation. Methods: Male Wistar rats were divided into sensory-deprived (SD) and control (unplucked) groups. In SD group, all vibrissae except the D2 vibrissa were plucked on postnatal day one, and kept plucked for a period of 60 d. After that, whisker regrowth was allowed for 8-10 d. The D2 principal whisker (PW) and the D1 adjacent whisker (AW) were either deflected singly or both deflected in a serial order that the AW was deflected 20 ms before PW deflection for assessing lateral inhibition, and neuronal responses were recorded from layer IV of the D2 barrel cortex. DRN was electrically stimulated at inter-stimulus intervals (ISIs) ranging from 0 to 800 ms before whisker deflection. Results: PW-evoked responses increased in the SD group with DRN electrical stimulation at ISIs of 50 ms and 100 ms, whereas AW-evoked responses increased at ISI of 800 ms in both groups. Whisker plucking before DRN stimulation could enhance the responsiveness of barrel cortex neurons to PW deflection and decrease the responsiveness to AW deflection. DRN electrical stimulation significantly reduced this difference only in PW-evoked responses between groups. Besides, no DRN stimulation-related changes in response latency were observed following PW or AW deflection in either group. Moreover, condition test (CT) ratio increased in SD rats, while DRN stimulation did not affect the CT ratio in either group. There was no obvious change in 5-HT2A receptor protein density in barrel cortex between SD and control groups. Conclusion: These results suggest that DRN electrical stimulation can modulate information processing in the SD barrel cortex

Analysis of the radiative decays among the charmonium states

In this article, we study the radiative decays among the charmonium states with the heavy quark effective theory, and make predictions for the ratios among the radiative decay widths of an special multiplet to another multiplet. The predictions can be confronted with the experimental data in the future and put additional constraints in identifying the $X$, $Y$, $Z$ charmonium-like mesons.Comment: 12 pages, revised revisio

Accretion among preplanetary bodies: the many faces of runaway growth

(abridged) When preplanetary bodies reach proportions of ~1 km or larger in size, their accretion rate is enhanced due to gravitational focusing (GF). We have developed a new numerical model to calculate the collisional evolution of the gravitationally-enhanced growth stage. We validate our approach against existing N-body and statistical codes. Using the numerical model, we explore the characteristics of the runaway growth and the oligarchic growth accretion phases starting from an initial population of single planetesimal radius R_0. In models where the initial random velocity dispersion (as derived from their eccentricity) starts out below the escape speed of the planetesimal bodies, the system experiences runaway growth. We find that during the runaway growth phase the size distribution remains continuous but evolves into a power-law at the high mass end, consistent with previous studies. Furthermore, we find that the largest body accretes from all mass bins; a simple two component approximation is inapplicable during this stage. However, with growth the runaway body stirs up the random motions of the planetesimal population from which it is accreting. Ultimately, this feedback stops the fast growth and the system passes into oligarchy, where competitor bodies from neighboring zones catch up in terms of mass. Compared to previous estimates, we find that the system leaves the runaway growth phase at a somewhat larger radius. Furthermore, we assess the relevance of small, single-size fragments on the growth process. In classical models, where the initial velocity dispersion of bodies is small, these do not play a critical role during the runaway growth; however, in models that are characterized by large initial relative velocities due to external stirring of their random motions, a situation can emerge where fragments dominate the accretion.Comment: Accepted for publication in Icaru

Magnetic and thermal properties of 4f-3d ladder-type molecular compounds

We report on the low-temperature magnetic susceptibilities and specific heats of the isostructural spin-ladder molecular complexes L$_{2}$[M(opba)]_{3\cdot xDMSO$\cdot y$H$_{2}$O, hereafter abbreviated with L$_{2}$M$_{3}$ (where L = La, Gd, Tb, Dy, Ho and M = Cu, Zn). The results show that the Cu containing complexes (with the exception of La$_{2}$Cu$_{3}$) undergo long range magnetic order at temperatures below 2 K, and that for Gd$_{2}$Cu$_{3}$ this ordering is ferromagnetic, whereas for Tb$_{2}$Cu$_{3}$ and Dy$_{2}$Cu$_{3}$ it is probably antiferromagnetic. The susceptibilities and specific heats of Tb$_{2}$Cu$_{3}$ and Dy$_{2}$Cu$_{3}$ above $T_{C}$ have been explained by means of a model taking into account nearest as well as next-nearest neighbor magnetic interactions. We show that the intraladder L--Cu interaction is the predominant one and that it is ferromagnetic for L = Gd, Tb and Dy. For the cases of Tb, Dy and Ho containing complexes, strong crystal field effects on the magnetic and thermal properties have to be taken into account. The magnetic coupling between the (ferromagnetic) ladders is found to be very weak and is probably of dipolar origin.Comment: 13 pages, 15 figures, submitted to Phys. Rev.

Parity nonconserving cold neutron-parahydrogen interactions

Three pion dominated observables of the parity nonconserving interactions between the cold neutrons and parahydrogen are calculated. The transversely polarized neutron spin rotation, unpolarized neutron longitudinal polarization, and photon-asymmetry of the radiative polarized neutron capture are considered. For the numerical evaluation of the observables, the strong interactions are taken into account by the Reid93 potential and the parity nonconserving interactions by the DDH model along with the two-pion exchange.Comment: 17 pages, 2 figure

Learning and Designing Stochastic Processes from Logical Constraints

Continuous time Markov Chains (CTMCs) are a convenient mathematical model for a broad range of natural and computer systems. As a result, they have received considerable attention in the theoretical computer science community, with many important techniques such as model checking being now mainstream. However, most methodologies start with an assumption of complete specification of the CTMC, in terms of both initial conditions and parameters. While this may be plausible in some cases (e.g. small scale engineered systems) it is certainly not valid nor desirable in many cases (e.g. biological systems), and it does not lead to a constructive approach to rational design of systems based on specific requirements. Here we consider the problems of learning and designing CTMCs from observations/ requirements formulated in terms of satisfaction of temporal logic formulae. We recast the problem in terms of learning and maximising an unknown function (the likelihood of the parameters) which can be numerically estimated at any value of the parameter space (at a non-negligible computational cost). We adapt a recently proposed, provably convergent global optimisation algorithm developed in the machine learning community, and demonstrate its efficacy on a number of non-trivial test cases