Preliminary study on herpetofaunal diversity of Nilgala forest area in Monaragala district, Sri Lanka

Nilgala ForestArea (NFA) is one of the largest and important forest area in Monaragala District, UvaProvince. It contain 12,432 hectares and lies within 7° 08' - 7° 14' NL and 81 D 16' - 81020' EL. Itselevation range between 200m to 700m within the Irindahela, Hangale, Yakun hela (highest point 700rn), Hamapola, Badangarnuwa, Keenagoda, Makada, Karadugala, Kukulagoda, Ewalahela, Gorikkadahills. The mean annual rainfall varies between where the average annual rainfall 1500mm - 2000mm(rain during northeast monsoon). while the mean annual temperature of the area is 28 DC - 31°C.The vegetation comprised with lowland tropical moist semi evergreen forest and savannah forest,home gardens and small patch paddy cultivations. The dominant tree species are Aralu (Terminaliachebulav, Bulu iTerminalia bellirica) and Nelli iPhyllanthus emblicay. Other than biodiversity,Nilgala is rich of archaeological monuments, such as prehistoric, proto-historic and historical Buddhistmonasteries.During the two-year study period, total number of 70 reptile species were and 19 amphibian speciesrecorded. Reptiles include 44 genera of 17 families and 20 (28.5%) endemic species. Amphibianfauna contain 13 genera including 4 families and 6 (31.5%) endemic species. 41.4% (29) of reptilesand 26.3% (5) of Amphibians listed as 'Nationally Threatened' in the 1999 IUCN National threatenedlist. Out of70 species 38 (54.2%) are Serpentoid reptiles (11 endemics) and 32 (45.7%) species areof Tetrapod reptiles (9 endemics). Among the recorded species, 11 Serpentoid, 3 Tetrapod, and 2amphibians have not been recorded by previous workers. Furthermore seven unidentified specieswere also recorded during the survey, which probably include new amphibian species belonging togenus Nannophrys. Human activities such as man-made fire, ilIegallogging, extensive use of chemicalsfor agriculture, forest clearing for chena cultivation and road kills were identified as a main threat forthe natural habitats as well as faunal species.

Gene content evolution in the arthropods

Arthropods comprise the largest and most diverse phylum on Earth and play vital roles in nearly every ecosystem. Their diversity stems in part from variations on a conserved body plan, resulting from and recorded in adaptive changes in the genome. Dissection of the genomic record of sequence change enables broad questions regarding genome evolution to be addressed, even across hyper-diverse taxa within arthropods. Using 76 whole genome sequences representing 21 orders spanning more than 500 million years of arthropod evolution, we document changes in gene and protein domain content and provide temporal and phylogenetic context for interpreting these innovations. We identify many novel gene families that arose early in the evolution of arthropods and during the diversification of insects into modern orders. We reveal unexpected variation in patterns of DNA methylation across arthropods and examples of gene family and protein domain evolution coincident with the appearance of notable phenotypic and physiological adaptations such as flight, metamorphosis, sociality, and chemoperception. These analyses demonstrate how large-scale comparative genomics can provide broad new insights into the genotype to phenotype map and generate testable hypotheses about the evolution of animal diversity

Climate Change Impacts on Rice Farming Systems in Northwestern Sri Lanka

Sri Lanka has achieved tremendous progress since 1950 in crop production and food availability. Yields grew at an impressive rate until leveling off in the mid-eighties. Sri Lanka's population is anticipated to grow in the coming decades, creating an ever-greater demand for food security on the household, sub-district, regional, and national scales.The agricultural sector in Sri Lanka is vulnerable to climate shocks. An unusual succession of droughts and floods from 2008 to 2014 has led to both booms and busts in agricultural production, which were reflected in food prices. In both instances, the majority of farmers and consumers were adversely affected.At present the rice-farming systems are under stress due to inadequate returns for the farmers and difficulty in coping with shocks due to climate, pests, and diseases, and prices for produce. There are government price-support mechanisms, fertilizer-subsidy schemes, and crop insurance schemes, but the levels of the supports are modest and often do not effectively reach the farmers

Vision, challenges and opportunities for a Plant Cell Atlas

With growing populations and pressing environmental problems, future economies will be increasingly plant-based. Now is the time to reimagine plant science as a critical component of fundamental science, agriculture, environmental stewardship, energy, technology and healthcare. This effort requires a conceptual and technological framework to identify and map all cell types, and to comprehensively annotate the localization and organization of molecules at cellular and tissue levels. This framework, called the Plant Cell Atlas (PCA), will be critical for understanding and engineering plant development, physiology and environmental responses. A workshop was convened to discuss the purpose and utility of such an initiative, resulting in a roadmap that acknowledges the current knowledge gaps and technical challenges, and underscores how the PCA initiative can help to overcome them.</jats:p

Gold nanoparticles stabilized with βcyclodextrin-2-amino-4-(4-chlorophenyl)thiazole complex : a novel system for drug transport

While 2-amino-4-(4-chlorophenyl)thiazole (AT) drug and thiazole derivatives have several biological applications, these compounds present some drawbacks, such as low aqueous solubility and instability. A new complex of βCD-AT has been synthesized to increase AT solubility and has been used as a substrate for the deposit of solid-state AuNPs via magnetron sputtering, thus forming the βCD-AT-AuNPs ternary system, which is stable in solution. Complex formation has been confirmed through powder X-ray diffraction and 1D and 2D nuclear magnetic resonance. Importantly, the amine and sulfide groups of AT remained exposed and can interact with the surfaces of the AuNPs. The complex association constant (970 M-1) has been determined using phase solubility analysis. AuNPs formation (32 nm average diameter) has been studied by UV-Visible spectroscopy, transmission/scanning electron microscopy and energy-dispersive X-ray analysis. The in vitro permeability assays show that effective permeability of AT increased using βCD. In contrast, the ternary system did not have the capacity to diffuse through the membrane. Nevertheless, the antibacterial assays have demonstrated that AT is transferred from βCD-AT-AuNPs, being available to exert its antibacterial activity. In conclusion, this novel βCD-AT-AuNPs ternary system is a promising alternative to improve the delivery of AT drugs in therapy

Data from: Restriction site associated DNA (RAD) for de novo sequencing and marker discovery in sugarcane borer, Diatraea saccharalis Fab. (Lepidoptera: Crambidae)

We present the development of a genomic library using RADseq (restriction site associated DNA sequencing) protocol for marker discovery that can be applied on evolutionary studies of the sugarcane borer Diatraea saccharalis, an important South American insect pest. A RADtag protocol combined with Illumina paired-end sequencing allowed de novo discovery of 12 811 SNPs and a high-quality assembly of 122.8M paired-end reads from six individuals, representing 40 Gb of sequencing data. Approximately 1.7 Mb of the sugarcane borer genome distributed over 5289 minicontigs were obtained upon assembly of second reads from first reads RADtag loci where at least one SNP was discovered and genotyped. Minicontig lengths ranged from 200 to 611 bp and were used for functional annotation and microsatellite discovery. These markers will be used in future studies to understand gene flow and adaptation to host plants and control tactics

Repetitive elements identified with RepeatMasker.

This file contains a table of the identified repetitive elements (.tbl), a file with masked contigs and repetitive elements (.fasta format) and a file with contig ID, repetitive element ID and coordinates

Final SNP set.

This file contains the final SNP set (after several filtering steps detailed at manuscript) in .vcf and .fasta format. Fasta file contains ~80bp sequences of each RADtag loci. After alignment of each sequences from same loci, SNP of each sample can be accessed

All kmer=27 minicontigs

This file contains minicontigs assembled with all second reads we generated. Second reads correspond to reads generated from random sheared ends of a genomic fragment. Since reads with different start and endings position were generated from the same genomic regions it allows the assemble of minicontigs bigger than read size usually sequenced (bigger than ~80bp reads